View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18743_low_10 (Length: 534)
Name: NF18743_low_10
Description: NF18743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18743_low_10 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 501; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 501; E-Value: 0
Query Start/End: Original strand, 19 - 531
Target Start/End: Original strand, 8957556 - 8958068
Alignment:
| Q |
19 |
ataactgtggctgctggaactatggatagagaatttcatgggacccttacacttggaaatggtaacacaatcacggggttgtcacgttatataggaacat |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8957556 |
ataactgtggctgctggaactatggatagagaatttcaagggacccttacacttggaaatggtaacacaatcacggggttgtcacgttatataggaacat |
8957655 |
T |
|
| Q |
119 |
tttcttccaataacgttccaattgttttcatgggtttatgtgacaatgttaaggaattgaaaaaagtgaaaaacaagattgttgtgtgtgaagacaagga |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8957656 |
tttcttccaataacgttccaattgttttcatgggtttatgtgacaatgttaaggaattgaaaaaagtgaaaaacaagattgttgtgtgtgaagacaagga |
8957755 |
T |
|
| Q |
219 |
cggagctagccttttttatcaagtcgataatttggatgaagcaaaagttcttggggctgtttttattacaaatgttacaaacatatacttttcagaaaat |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8957756 |
cggagctagccttttttatcaagtcgataatttggatgaagcaaaagttcttggggctgtttttattacaaatgttacaaacatatacttttcagaaaat |
8957855 |
T |
|
| Q |
319 |
agttttgcatccatcattgttgatccaatcaatggagaagtagtcaaagcttacatcaagagttataactctaaaaactctacttcaaaagcaagcatgt |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8957856 |
agttttgcatccatcattgttgatccaatcaatggagaagtagtcaaagcttacatcaagagttataactctaaaaactctacttcaaaagcaagcatgt |
8957955 |
T |
|
| Q |
419 |
ctttcaagaaaacagtttttggaattaaaccagcacctagtgtttcttcttatagttcaagagggccttcaaatagttgtccatatattttgaaacctga |
518 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8957956 |
ctttcatgaaaacagtttttggaattaaaccagcacctagtgtttcttcttatagttcaagagggccttcaaatagttgtccatatattttgaaacctga |
8958055 |
T |
|
| Q |
519 |
catctctgctcct |
531 |
Q |
| |
|
|||| |||||||| |
|
|
| T |
8958056 |
catcactgctcct |
8958068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 401 - 521
Target Start/End: Complemental strand, 8946129 - 8946009
Alignment:
| Q |
401 |
cttcaaaagcaagcatgtctttcaagaaaacagtttttggaattaaaccagcacctagtgtttcttcttatagttcaagagggccttcaaatagttgtcc |
500 |
Q |
| |
|
|||||| ||||| |||||||||||| | || ||||||||| ||||||||||||| |||||| |||| |||||| ||||| || |||||||||||||| |
|
|
| T |
8946129 |
cttcaatagcaaatatgtctttcaagttatcaatttttggaactaaaccagcacctggtgtttactcttctagttcgagaggaccatcaaatagttgtcc |
8946030 |
T |
|
| Q |
501 |
atatattttgaaacctgacat |
521 |
Q |
| |
|
|||| | |||||||||||||| |
|
|
| T |
8946029 |
atatgtcttgaaacctgacat |
8946009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 394 - 521
Target Start/End: Original strand, 8962945 - 8963072
Alignment:
| Q |
394 |
aactctacttcaaaagcaagcatgtctttcaagaaaacagtttttggaattaaaccagcacctagtgtttcttcttatagttcaagagggccttcaaata |
493 |
Q |
| |
|
||||||| ||||| || || ||||||||||||| ||| |||||| |||||||| |||||| || || ||||||||| |||||||| ||||| | |
|
|
| T |
8962945 |
aactctagttcaatagaaaaaatgtctttcaagattacatcttttggtgctaaaccagtacctagggtggatttttatagttctagagggccatcaaaga |
8963044 |
T |
|
| Q |
494 |
gttgtccatatattttgaaacctgacat |
521 |
Q |
| |
|
||||||||||| | |||||||||||||| |
|
|
| T |
8963045 |
gttgtccatatgtgttgaaacctgacat |
8963072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 21 - 80
Target Start/End: Complemental strand, 8946518 - 8946459
Alignment:
| Q |
21 |
aactgtggctgctggaactatggatagagaatttcatgggacccttacacttggaaatgg |
80 |
Q |
| |
|
|||||| |||||||| ||||||||| | |||||||||| ||| ||||||||||| ||||| |
|
|
| T |
8946518 |
aactgttgctgctggtactatggatcgtgaatttcatgcgactcttacacttggtaatgg |
8946459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 136 - 209
Target Start/End: Complemental strand, 8946403 - 8946330
Alignment:
| Q |
136 |
ccaattgttttcatgggtttatgtgacaatgttaaggaattgaaaaaagtgaaaaacaagattgttgtgtgtga |
209 |
Q |
| |
|
|||||||||||||||||||| || |||||||||| ||||| | |||||||| ||||| ||||| || ||||| |
|
|
| T |
8946403 |
ccaattgttttcatgggtttgtgcgacaatgttacagaattaatcaaagtgaagaacaatattgtggtttgtga |
8946330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 203; Significance: 1e-110; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 19 - 521
Target Start/End: Complemental strand, 34963285 - 34962792
Alignment:
| Q |
19 |
ataactgtggctgctggaactatggatagagaatttcatgggacccttacacttggaaatggtaacacaatcacggggttgtcacgttatataggaacat |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||||||||||| ||||| || ||||| | |||| ||||||||| |
|
|
| T |
34963285 |
ataactgtggctgctggaactatggatagagattttcaagggactgttacacttggaaatggtaacaaaatcataggattgtctctttatgtaggaacat |
34963186 |
T |
|
| Q |
119 |
tttcttccaataacgttccaattgttttcatgggtttatgtgacaatgttaaggaattgaaaaaagtgaaaaacaagattgttgtgtgtgaagacaagga |
218 |
Q |
| |
|
| ||| | | | ||||||||||||||||||| ||||||| |||||||| | ||||||||||||||||||| ||||||| | ||||||||||||||| | |
|
|
| T |
34963185 |
tgtctacacaagatgttccaattgttttcatggatttatgtaacaatgtttatgaattgaaaaaagtgaaaagcaagattatagtgtgtgaagacaagaa |
34963086 |
T |
|
| Q |
219 |
cggagctagccttttttatcaagtcgataatttggatgaagcaaaagttcttggggctgtttttattacaaatgttacaaacatatacttttcagaaaat |
318 |
Q |
| |
|
||| || ||| ||| | |||||| |||||||| ||| |||||||||| |||| |||||||| ||| ||||||| || |||||| || |||| ||||| |
|
|
| T |
34963085 |
tggaactgacctatttgaccaagtcaataatttgaatgcagcaaaagtttttggagctgttttgatttcaaatgtctcagacatattctattcacaaaat |
34962986 |
T |
|
| Q |
319 |
agttttgcatccatcattgttgatccaatcaatggagaagtagtcaaagcttacatcaagagttataactctaaaaactctacttcaaaagcaagcatgt |
418 |
Q |
| |
|
||||||||| ||||| ||||| ||||||| ||||| ||| | |||||||||||||||||||| || ||||||||||||| |||||||||| |
|
|
| T |
34962985 |
agttttgcaaccatccttgttaatccaataaatggtgaaattgtcaaagcttacatcaagag---------tagtaactctacttcaattgcaagcatgt |
34962895 |
T |
|
| Q |
419 |
ctttcaagaaaacagtttttggaattaaaccagcacctagtgtttcttcttatagttcaagagggccttcaaatagttgtccatatattttgaaacctga |
518 |
Q |
| |
|
|||||| ||||||||||||||||| ||||||||||||||||||| ||| ||||||||||||||||| ||| |||||||||||| | | ||||||||||| |
|
|
| T |
34962894 |
ctttcatgaaaacagtttttggaactaaaccagcacctagtgttgattcatatagttcaagagggccatcatatagttgtccatttgtgttgaaacctga |
34962795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 128 - 208
Target Start/End: Original strand, 25928102 - 25928183
Alignment:
| Q |
128 |
ataacgttccaattgttttcatgggtttatgtgacaatgttaaggaattgaaaaaa-gtgaaaaacaagattgttgtgtgtg |
208 |
Q |
| |
|
|||| ||||| |||||||| ||||||||||| |||||||||||||| ||||||||| || |||| ||||||||| ||||||| |
|
|
| T |
25928102 |
ataatgttcctattgtttttatgggtttatgcgacaatgttaaggagttgaaaaaacgtaaaaaccaagattgtggtgtgtg |
25928183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 78; Significance: 4e-36; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 316 - 531
Target Start/End: Complemental strand, 21687374 - 21687162
Alignment:
| Q |
316 |
aatagttttgcatccatcattgttgatccaatcaatggagaagtagtcaaagcttacatcaagagttataactctaaaaactctacttcaaaagcaagca |
415 |
Q |
| |
|
|||||||| ||||||||||| || ||||| | ||||||||| | || |||||||||||||||||| |||||||||| | ||| ||||| ||||| || |
|
|
| T |
21687374 |
aatagtttcccatccatcattattaatccagtaaatggagaaattgtgaaagcttacatcaagagtcataactctaa---cgctagttcaatagcaaaca |
21687278 |
T |
|
| Q |
416 |
tgtctttcaagaaaacagtttttggaattaaaccagcacctagtgtttcttcttatagttcaagagggccttcaaatagttgtccatatattttgaaacc |
515 |
Q |
| |
|
|||||||||||||||||| ||| || ||||| || |||||||||| || |||||| ||||| || || |||||||||||||||||| | |||||||| |
|
|
| T |
21687277 |
tgtctttcaagaaaacagctttcggtgttaaatcaacacctagtgtggatttttatagctcaaggggaccatcaaatagttgtccatatgtgttgaaacc |
21687178 |
T |
|
| Q |
516 |
tgacatctctgctcct |
531 |
Q |
| |
|
||||||| |||||||| |
|
|
| T |
21687177 |
tgacatcactgctcct |
21687162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 134 - 211
Target Start/End: Complemental strand, 21687553 - 21687476
Alignment:
| Q |
134 |
ttccaattgttttcatgggtttatgtgacaatgttaaggaattgaaaaaagtgaaaaacaagattgttgtgtgtgaag |
211 |
Q |
| |
|
||||||||||||| |||||| | |||||||||||||| ||||| || | |||||| | |||||||| || ||||||| |
|
|
| T |
21687553 |
ttccaattgtttttatgggtatgtgtgacaatgttaaagaattaaacacagtgaagagaaagattgtggtttgtgaag |
21687476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 409 - 529
Target Start/End: Complemental strand, 19375998 - 19375878
Alignment:
| Q |
409 |
gcaagcatgtctttcaagaaaacagtttttggaattaaaccagcacctagtgtttcttcttatagttcaagagggccttcaaatagttgtccatatattt |
508 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| |||||||| ||||||||||| | |||||||||||||||||||||||||| |||||||| | | | |
|
|
| T |
19375998 |
gcaagcatgtctttcaagaaaacaatttttggtgttaaaccaacacctagtgttgatctttatagttcaagagggccttcaaataattgtccatttgtgt |
19375899 |
T |
|
| Q |
509 |
tgaaacctgacatctctgctc |
529 |
Q |
| |
|
||||||| |||||| |||||| |
|
|
| T |
19375898 |
tgaaacccgacatcactgctc |
19375878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University