View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18743_low_12 (Length: 485)
Name: NF18743_low_12
Description: NF18743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18743_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 459; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 459; E-Value: 0
Query Start/End: Original strand, 12 - 478
Target Start/End: Complemental strand, 42708514 - 42708048
Alignment:
| Q |
12 |
aagaagatacatcatactcctacaacttcatgattggagaattaatttctggataggagatataacataaaagcagacaaataagaaggtacataccaga |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42708514 |
aagaagatacatcatactcctacaacttcatgattggagaattaatttctggataggagatataacataaaagcagacaaataagaaggtacataccaga |
42708415 |
T |
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| Q |
112 |
gctggtacatacttcttaatagcagccaacatggctgcatgcccaacagcagtaacctgtaggaaattgatgttgccctacttagaacattatactacac |
211 |
Q |
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| T |
42708414 |
gctggtacatacttcttaatagcagccaacatggctgcatgcccaacagcggtaacctgtaggaaattgatgttgccctacttagaacattatactacac |
42708315 |
T |
|
| Q |
212 |
caaaagcctacgaaaaatagccacatgtaacggatacagagaatctaccaaataaaagtatatgaaagagtaagaagttttgtattgctttccattcttc |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42708314 |
caaaagcctacgaaaaatagccacatgtaacggatacagagaatctaccaaataaaagtatatgaaagagtaagaagttttgtattgctttccattcttc |
42708215 |
T |
|
| Q |
312 |
tcttttctctttattttatagctctaaatcactcccaaagaccagaaacatgtttagaccaacttaaagcgttaaaacatgcacaactcaccggaagaag |
411 |
Q |
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| T |
42708214 |
tcttttctctttattttatagctctaaatcactcccaaagaccagaaacatgtttagaccaacttaaagcgttaaaacatgcacaactcaccggaagaag |
42708115 |
T |
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| Q |
412 |
cattaaaactccaattggaataactgaagccatgtcagtcaaggttctcttaagtgtcttcttctct |
478 |
Q |
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| T |
42708114 |
cattaaaactccaattggaataactgaagccatgtcagtcaaggttctcctaagtgtcttcttctct |
42708048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 104 - 171
Target Start/End: Original strand, 25708020 - 25708087
Alignment:
| Q |
104 |
ataccagagctggtacatacttcttaatagcagccaacatggctgcatgcccaacagcagtaacctgt |
171 |
Q |
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||||||| | ||||||||| ||| ||| ||||||||||| |||||||||||||| |||||||||||| |
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| T |
25708020 |
ataccagggatggtacatatctctgaatggcagccaacattgctgcatgcccaacggcagtaacctgt |
25708087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 395 - 477
Target Start/End: Original strand, 25708994 - 25709076
Alignment:
| Q |
395 |
caactcaccggaagaagcattaaaactccaattggaataactgaagccatgtcagtcaaggttctcttaagtgtcttcttctc |
477 |
Q |
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||||| || |||| ||||||||||| || || |||| |||||||||||||||||| |||||||| ||||||| |||||||| |
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| T |
25708994 |
caacttacaggaataagcattaaaatgccgataggaacaactgaagccatgtcagttaaggttcttttaagtgctttcttctc |
25709076 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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