View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18743_low_13 (Length: 475)
Name: NF18743_low_13
Description: NF18743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18743_low_13 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 221; Significance: 1e-121; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 11 - 247
Target Start/End: Original strand, 5830195 - 5830431
Alignment:
| Q |
11 |
atcatcactggtttttgttgcgagaaaaatgaaacttttatgttgcacttagcatatatgtttcacttgctactcaagggtgcaaagtgttagagccgca |
110 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| |
|
|
| T |
5830195 |
atcatcactggtttttgttgcgataaaaatgaaacttttatgttgcacttagcatatatgtttcacttgttactcaagagtgcaaagtgttagagccgca |
5830294 |
T |
|
| Q |
111 |
gcaaaaatttggcttctaatagtgatatgaaatacaatcctcattaaaatttaaagagaaaataatgtagcctgaataataaattgtatgaagaaatata |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5830295 |
gcaaaaatttggcttctaatagtgatatgaaatacaatcctcattaaaattgaaagagaaaataatgtagcctgaataataaattgtatgaagaaatata |
5830394 |
T |
|
| Q |
211 |
aatgtctaaagaagaaagattaaacttatgataatat |
247 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5830395 |
aatgtctaaagaagaaagattaaacttatgataatat |
5830431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 192 - 233
Target Start/End: Original strand, 29084721 - 29084762
Alignment:
| Q |
192 |
aattgtatgaagaaatataaatgtctaaagaagaaagattaa |
233 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
29084721 |
aattgtatgaagaaatataaatttctaaagaagaaagattaa |
29084762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 365 - 394
Target Start/End: Complemental strand, 9955080 - 9955051
Alignment:
| Q |
365 |
cacaattctccacctcgttcataatttgaa |
394 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
9955080 |
cacaattctccacctcgttcataatttgaa |
9955051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University