View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18743_low_15 (Length: 445)

Name: NF18743_low_15

Description: NF18743

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF18743_low_15

[»] chr7 (1 HSPs)

[»] chr6 (1 HSPs)

Target: chr7 (Bit Score: 228; Significance: 1e-125; HSPs: 1)

Name: chr7

Description:

Target: chr7; HSP #1

Raw Score: 228; E-Value: 1e-125

Query Start/End: Original strand, 69 - 425

Target Start/End: Complemental strand, 28836483 - 28836145

Alignment:

Q	69	aagaatcacataatttgagacggtgaaaccaaattttatatactttcttttatattttaataatgaaatccattagttgccgaagaaaataggtaaccat	168	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\| \|\| \|\|\|\|\| \|\| \|\|\|\|\| \|\|\|\|\|\|\| \|\|\|\|\|\|\|
T	28836483	aagaatcacataatttgagacggtgagaccaaattttatctactttcttttctattttaatcgtggaatcc-----ttcccgaaaaaaatagataaccat	28836389	T

Q	169	tttttccctctattttttcctctaataagagtccttaatatgttaaggtatttgttaagtaaaaaactccctcttaaagacgctatgaggttttgatgta	268	Q
		\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	28836388	ttttt------------tcctctaataagagtccttaatatgttaaggtctttgttaagtaaaaaactcc-tgttaaagacgctatgaggttttgatgta	28836302	T

Q	269	gacccctcacttgatagaatttttggtgcaacacttgaaccaccgttagttcctagaatctttatctataatcagattatcaatatttttagacggatag	368	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\| \|\|\|\|
T	28836301	gacccctcacttgatagaatttttggtgcaacacttgaaccaccgttagttcctagaatctttatctataatcagattatcaatatttttggacaaatag	28836202	T

Q	369	aggattatttttggatccaacgaataactgttaaaatatacaacacaagttgagggt	425	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|
T	28836201	aggattatttttggatccaacgaataactgttaaaatatacaacacaagctgagggt	28836145	T

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Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)

Name: chr6

Description:

Target: chr6; HSP #1

Raw Score: 29; E-Value: 0.0000006

Query Start/End: Original strand, 319 - 355

Target Start/End: Complemental strand, 2516359 - 2516323

Alignment:

Q	319	tcctagaatctttatctataatcagattatcaatatt	355	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \| \|\|\|\|\|\|\|\|\|\|\|\|
T	2516359	tcctagaatctttatctataatgacattatcaatatt	2516323	T

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