View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18743_low_17 (Length: 438)
Name: NF18743_low_17
Description: NF18743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18743_low_17 |
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Alignment Details
Target: chr3 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 14 - 422
Target Start/End: Complemental strand, 29208085 - 29207675
Alignment:
| Q |
14 |
tgagatgaatgggaggtgtttcttaagcaacaaaacagcttgcatacttcactag----atagtgatacaacctttgttttgaaataagcacaattatat |
109 |
Q |
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| T |
29208085 |
tgagatgaatgggaggtgtttcttaagcaacaaaacatcttgcatacttcactagctagatagtgatacaacctttgttttgaaataagcacaattatat |
29207986 |
T |
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| Q |
110 |
atgtatgaaacaaagttgcattgccaccttgtgcttttaataacacatatatgtgaaatgataatttacatatataaaaataataaatcagcacaagcac |
209 |
Q |
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| T |
29207985 |
atgtatgaaacaa-gttgcattgtcaccttgtgcttttaataacacatatatgtgaaatgataatttacatatataaaaataataaatcagcacaagcac |
29207887 |
T |
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| Q |
210 |
acaaatgtgtgacgaatcataattgacataatataaaagtatatatattttagaaaagcatgcatacgac----atatgtgatatattgaaagtacaact |
305 |
Q |
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| T |
29207886 |
acaaatgtgtgacgaatcataattgacataatataaa-----gtatattttagaaaagcatgcatacgacatatatatgtgatatattgaaagtacaact |
29207792 |
T |
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| Q |
306 |
aacctaacaaagtttatccatgcaactttctacttgtcatcgtttctttaaatcacaattgcctaaactacacatatctctttaaactttgttaaaagta |
405 |
Q |
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| T |
29207791 |
aacctaacaaagtttatccatgcaactttctacttgtcatcatttctttaaatcacaattgcctaaactacacatatctctttaaactttgttaaaagta |
29207692 |
T |
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| Q |
406 |
ttatgctacaaatgata |
422 |
Q |
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| T |
29207691 |
ttatgctacaaatgata |
29207675 |
T |
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Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 108 - 190
Target Start/End: Original strand, 38378289 - 38378369
Alignment:
| Q |
108 |
atatgtatgaaacaaagttgcattgccaccttgtgcttttaataacacatatatgtgaaatgataatttacatatataaaaat |
190 |
Q |
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| T |
38378289 |
atatgtatggagcgaagttgcattgccactttgtgcctctaat--cacacatatgagaaatgataagttacatgtataaaaat |
38378369 |
T |
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