View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18743_low_2 (Length: 726)
Name: NF18743_low_2
Description: NF18743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18743_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 639; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 639; E-Value: 0
Query Start/End: Original strand, 64 - 714
Target Start/End: Complemental strand, 42289846 - 42289196
Alignment:
| Q |
64 |
gtttgaaacaaagtttactacttaattaatgaataattcacatgtaactaacaagcaatatttccctaaattaataaatttctcaccccaatcttcattg |
163 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
42289846 |
gtttgaaacaaagtttactacttaattaatgaataattcacatgtaactaacaagcaatatttccttaaattaataaatttctcaccccaatcttcattg |
42289747 |
T |
|
| Q |
164 |
caagatattcgagcttccaaaatgttgacttgaatgtgctgattttaggtcatgattcaaagaaaccatactagtattcatcatgtcacgttgttgttca |
263 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42289746 |
caagatatttgagcttccaaaatgttgacttgaatgtgctgattttaggtcatgattcaaagaaaccatactagtattcatcatgtcacgttgttgttca |
42289647 |
T |
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| Q |
264 |
ctttgtgaaaatccaccactcatatttctgaccattcctccaacaccaagaaaatctaaagttaacttatcagatccaccaaatctcatattaaggttgc |
363 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
42289646 |
ctttgtgaaaatccaccactcatatttctgaccattcctccaacaccaagaaaatctaaagttaacttatcagatccaccaaatctcatattaagattgc |
42289547 |
T |
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| Q |
364 |
tttcattgccaaatatggatgatgtgtttccatttgcaatagagtttatcaatccatgaagatcgttgttgtcatgatcattttcaatacttgaacttct |
463 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42289546 |
tttcattgccaaatatggatgatgtgtttccatttgcaatagagtttatcaatccatgaagatcgttgttgtcatgatcattttcaatacttgaacttct |
42289447 |
T |
|
| Q |
464 |
atttccaaaagtggcattgatgttgttgtgatcagacacaacaaagtccctatcacctgatttatgatcattattactacctttgttattgttggtagaa |
563 |
Q |
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| T |
42289446 |
atttccaaaagtggcattgatgttgttgtgatcagacacaacaaagtccctatcacctgatttatgatcattattactacctttgttattgttggtagaa |
42289347 |
T |
|
| Q |
564 |
ttagttgaaccaatctgagaagctttttgaagcaatgcagtggcagacatgtgaggactagacatgttttgaccatgttgcattgaattgacaaaaccaa |
663 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42289346 |
ttagttgaaccaatctgagaagctttttgaagcaatgcagtggcagacatgtgaggactagacatgttttgaccatgttgcattgaattgacaaaaccaa |
42289247 |
T |
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| Q |
664 |
cttgatgatcacttaaagagctattgttgttaatgtaaagtgttgttcctt |
714 |
Q |
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| T |
42289246 |
cttgatgatcacttaaagagctattgttgttaatgtaaagtgttgttcctt |
42289196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 283 - 346
Target Start/End: Original strand, 12801113 - 12801176
Alignment:
| Q |
283 |
tcatatttctgaccattcctccaacaccaagaaaatctaaagttaacttatcagatccaccaaa |
346 |
Q |
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| T |
12801113 |
tcatatttctcaccattcctccaacaccaagaaaatccaaagtcaatttatctgatcctccaaa |
12801176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 567 - 616
Target Start/End: Original strand, 12801370 - 12801419
Alignment:
| Q |
567 |
gttgaaccaatctgagaagctttttgaagcaatgcagtggcagacatgtg |
616 |
Q |
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| T |
12801370 |
gttgaaccaatttgagcagctttttgaagcaatgcagttgccgacatgtg |
12801419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 566 - 620
Target Start/End: Complemental strand, 12777616 - 12777562
Alignment:
| Q |
566 |
agttgaaccaatctgagaagctttttgaagcaatgcagtggcagacatgtgagga |
620 |
Q |
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| T |
12777616 |
agttgcacccatttgagaagctttttgaagcaaagcagttgctgacatgtgagga |
12777562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 566 - 619
Target Start/End: Complemental strand, 36990901 - 36990848
Alignment:
| Q |
566 |
agttgaaccaatctgagaagctttttgaagcaatgcagtggcagacatgtgagg |
619 |
Q |
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||||| ||| || |||| ||||||||| |||||||||||||| ||||||||||| |
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| T |
36990901 |
agttgcacccatttgagcagctttttgtagcaatgcagtggctgacatgtgagg |
36990848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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