View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18743_low_20 (Length: 407)
Name: NF18743_low_20
Description: NF18743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18743_low_20 |
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Alignment Details
Target: chr1 (Bit Score: 372; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 18 - 405
Target Start/End: Original strand, 42270170 - 42270557
Alignment:
| Q |
18 |
aaaactagcagccctaaacaccgtagtagcaaacttaagccaaacccatgctggcccatcaacttatataataattacccacgaacgttagtggaaaaac |
117 |
Q |
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| T |
42270170 |
aaaactagcagccctaaacaccgtagtagcaaacttaagccaaacccatgctggcccatcaacttatataataattacccacgaacgttagtggaaaaac |
42270269 |
T |
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| Q |
118 |
tcggttgcatattttattgtctcccctataattgttataacctacaaatacttatacgtcacttaaatttgagcaatctcatccataaattcccacccca |
217 |
Q |
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| T |
42270270 |
tcggttgcatattttattgtctcccctataattgttataacctacaaatacttatacgtcacttaaatttgagcaatctcatccataaattcccacccca |
42270369 |
T |
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| Q |
218 |
caaggccacaacaacgattaaagaaacaaattaagagagattatacatacatatacactcctacctaggtccattccatcaattaaaggaatcacaaaca |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| |
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| T |
42270370 |
caaggccacaacaacgattaaagaaacaaattaagagagattatacatacatatacactcctacttaggtccattccaccaattaaaggaatcacaaaca |
42270469 |
T |
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| Q |
318 |
agaagagaaaaataaaatagctagagagaaatacataaagatgagtgaagaatgtggtggaaacactattgctacctatgctactcca |
405 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| |
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| T |
42270470 |
agaagagaaaaataaaatagctagagagaaatacataaagatgagtgaagaatgtggtggaaacactattgctacctctactactcca |
42270557 |
T |
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