View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18743_low_22 (Length: 380)
Name: NF18743_low_22
Description: NF18743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18743_low_22 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 348; Significance: 0; HSPs: 27)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 1 - 372
Target Start/End: Complemental strand, 22459003 - 22458632
Alignment:
| Q |
1 |
attttgtatcgatgaagatgatgttgtaggctttgaagttccaagaaacatactaattgattggttggtagaggagagagaagtgcacacaattgtcacc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
22459003 |
attttgtatcgatgaagatgatgttgtaggctttgaagttccaagagacatactaattgattggttgatagaggagagagaagtgcacacaattgtcacc |
22458904 |
T |
|
| Q |
101 |
attgttggaaagggaggacaaggaaaaacaactcttgcgaagaaggtttttgacgataacaagatcgttaaacactttgattgtcatgtatggatcagag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22458903 |
attgttggaaagggaggacaaggaaaaacaactcttgcaaagaaggtttttgacgacaacaagatcgttaaacactttgattgtcatgtatggatcagag |
22458804 |
T |
|
| Q |
201 |
tgtctcaatcatacaatatagaaggattgctgagggacatgttgcacaagttttacgaacaacaaggagcaaatctcccccaaagtattcatcaaatgaa |
300 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22458803 |
tgtctcaatcatacaatatagaaggcttgctgagggacatgctgcacaagttttacgaacaacaaggagcaaatctcccccaaagtattcatcaaatgaa |
22458704 |
T |
|
| Q |
301 |
tcgagagtcattggttgatgaagtgaggaactacttgcaggaaaaaaggtatgttatagtttttgatgatgt |
372 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22458703 |
tcgagagtcattggttgatgaagtgaggaactacttgcaggaaaaaaggtatgttatagtttttgatgatgt |
22458632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 1 - 372
Target Start/End: Complemental strand, 22481984 - 22481613
Alignment:
| Q |
1 |
attttgtatcgatgaagatgatgttgtaggctttgaagttccaagaaacatactaattgattggttggtagaggagagagaagtgcacacaattgtcacc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
22481984 |
attttgtatcgatgaagatgatgttgtaggctttgaagttccaagagacatactaattgattggttgatagaggagagagaagtgcacacaattgtcacc |
22481885 |
T |
|
| Q |
101 |
attgttggaaagggaggacaaggaaaaacaactcttgcgaagaaggtttttgacgataacaagatcgttaaacactttgattgtcatgtatggatcagag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22481884 |
attgttggaaagggaggacaaggaaaaacaactcttgcaaagaaggtttttgacgacaacaagatcgttaaacactttgattgtcatgtatggatcagag |
22481785 |
T |
|
| Q |
201 |
tgtctcaatcatacaatatagaaggattgctgagggacatgttgcacaagttttacgaacaacaaggagcaaatctcccccaaagtattcatcaaatgaa |
300 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22481784 |
tgtctcaatcatacaatatagaaggcttgctgagggacatgctgcacaagttttacgaacaacaaggagcaaatctcccccaaagtattcatcaaatgaa |
22481685 |
T |
|
| Q |
301 |
tcgagagtcattggttgatgaagtgaggaactacttgcaggaaaaaaggtatgttatagtttttgatgatgt |
372 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22481684 |
tcgagagtcattggttgatgaagtgaggaactacttgcaggaaaaaaggtatgttatagtttttgatgatgt |
22481613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 1 - 372
Target Start/End: Complemental strand, 22468462 - 22468091
Alignment:
| Q |
1 |
attttgtatcgatgaagatgatgttgtaggctttgaagttccaagaaacatactaattgattggttggtagaggagagagaagtgcacacaattgtcacc |
100 |
Q |
| |
|
||||| ||| ||||||| |||| |||| || ||||||| ||| || ||| | | ||||||| ||||||||||| |||| || || ||| ||||| || |
|
|
| T |
22468462 |
attttatatggatgaagctgatcttgtgggatttgaagagccacgagacaaattgattgatttgttggtagagggaagagcagagcgcaccgttgtctcc |
22468363 |
T |
|
| Q |
101 |
attgttggaaagggaggacaaggaaaaacaactcttgcgaagaaggtttttgacgataacaagatcgttaaacactttgattgtcatgtatggatcagag |
200 |
Q |
| |
|
|| ||||||| |||||||| |||||||| ||| | || ||||| ||||||||| | | ||| |||||||||| |||||||||||||||||||||| | |
|
|
| T |
22468362 |
atagttggaatgggaggactgggaaaaaccactatagccaagaaagtttttgacaaccaaaaggtcgttaaacattttgattgtcatgtatggatcacgg |
22468263 |
T |
|
| Q |
201 |
tgtctcaatcatacaatatagaaggattgctgagggacatgttgcacaagttttacgaacaacaaggagcaaatctcccccaaagtattcatcaaatgaa |
300 |
Q |
| |
|
|||||| | |||||||||||||| |||| ||||||| || |||| | | ||||| |||||||||| | | ||| || || ||| | ||||| ||| | |
|
|
| T |
22468262 |
tgtctcgaccatacaatatagaaaaattgttgagggaaattttgctcgatatttacaaacaacaaggggaagatcctcctcagagtctccatcagatgga |
22468163 |
T |
|
| Q |
301 |
tcgagagtcattggttgatgaagtgaggaactacttgcaggaaaaaaggtatgttatagtttttgatgatgt |
372 |
Q |
| |
|
|||| || |||| |||||||||||||| ||||||||||| | |||||||||||||||||| ||||||||||| |
|
|
| T |
22468162 |
tcgaaagccattagttgatgaagtgagaaactacttgcaaggaaaaaggtatgttatagtgtttgatgatgt |
22468091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 11 - 372
Target Start/End: Complemental strand, 22630943 - 22630581
Alignment:
| Q |
11 |
gatgaagatgatgttgtaggctttgaagttccaagaaacatactaattgattggttggtagaggagagagaagtgcacacaattgtcaccattgttggaa |
110 |
Q |
| |
|
||||||| ||||||||| |||||||| | ||| || ||| | | ||||||||| || |||||| |||| || | |||| ||||| | |||||||||| |
|
|
| T |
22630943 |
gatgaagctgatgttgtgggctttgacgagccacgagacaaattgattgattggctgatagagggaagagcagaacgcacagttgtctctattgttggaa |
22630844 |
T |
|
| Q |
111 |
agggaggacaaggaaaaacaactcttgcgaagaaggtttttgacgataacaagatcgttaaacactttgattgtcatgtatggatcagagtgtctcaatc |
210 |
Q |
| |
|
|||||||| || ||||| |||||||| ||||| |||||||| | ||| |||||||||||||||||||||||| |||||||| ||||||| | | |
|
|
| T |
22630843 |
tgggaggactggggaaaaccactcttgccaagaaaatttttgacaaccgaaaggtcgttaaacactttgattgtcatgaatggatcacggtgtctcgacc |
22630744 |
T |
|
| Q |
211 |
atacaatatagaaggattgctgagggacatgttgcacaagttttacgaacaacaaggagcaaatctcccccaaagtattcatcaaatgaatcgagagtca |
310 |
Q |
| |
|
||||||||||||| |||| |||||||||| |||| | || ||||| |||||||||| | ||| || |||||| | ||||||||| ||||| || || |
|
|
| T |
22630743 |
atacaatatagaaacattgttgagggacattttgctcgagatttacaaacaacaagggaaagatcctcctcaaagtctccatcaaatggatcgaaagcca |
22630644 |
T |
|
| Q |
311 |
ttggttgatgaagtgaggaactacttgcaggaaaaaaggtatg-ttatagtttttgatgatgt |
372 |
Q |
| |
|
|| |||||||||||||| ||||||||||| | ||||||||| | || |||| ||||||||||| |
|
|
| T |
22630643 |
ttagttgatgaagtgagaaactacttgcaaggaaaaaggtacgtttgtagtgtttgatgatgt |
22630581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 89 - 372
Target Start/End: Complemental strand, 22358428 - 22358145
Alignment:
| Q |
89 |
acaattgtcaccattgttggaaagggaggacaaggaaaaacaactcttgcgaagaaggtttttgacgataacaagatcgttaaacactttgattgtcatg |
188 |
Q |
| |
|
||||||||| |||||||||||| |||||||| |||||||| ||||| |||||||| ||||||||| | ||| |||| |||||||||||| ||| || |
|
|
| T |
22358428 |
acaattgtctccattgttggaatgggaggactgggaaaaaccactctagcgaagaaagtttttgacaacccaaaggtcgtaaaacactttgatcgtcgtg |
22358329 |
T |
|
| Q |
189 |
tatggatcagagtgtctcaatcatacaatatagaaggattgctgagggacatgttgcacaagttttacgaacaacaaggagcaaatctcccccaaagtat |
288 |
Q |
| |
|
||||||| | ||||||| | ||||||||| |||| | || |||||||||| ||| | |||||||| |||||||| | | || || || ||| | |
|
|
| T |
22358328 |
tatggattacggtgtctcgaccatacaatacagaaaaagtgttgagggacattatgctcgagttttacaaacaacaaaggaaagttcctcctcagagtct |
22358229 |
T |
|
| Q |
289 |
tcatcaaatgaatcgagagtcattggttgatgaagtgaggaactacttgcaggaaaaaaggtatgttatagtttttgatgatgt |
372 |
Q |
| |
|
| ||||||| ||||| ||||||| |||||||||||||| ||||||||||| ||||||||||||||| |||| ||||||||||| |
|
|
| T |
22358228 |
ccgtcaaatggatcgacagtcattagttgatgaagtgagaaactacttgcaagaaaaaaggtatgttgtagtgtttgatgatgt |
22358145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 11 - 372
Target Start/End: Complemental strand, 22443243 - 22442882
Alignment:
| Q |
11 |
gatgaagatgatgttgtaggctttgaagttccaagaaacatactaattgattggttggtagaggagagagaagtgcacacaattgtcaccattgttggaa |
110 |
Q |
| |
|
||||||| |||| |||| |||||||||| |||||| ||| | | ||||||| ||||||||||| ||||||| | |||| ||||| |||||||||||| |
|
|
| T |
22443243 |
gatgaagctgatattgttggctttgaagagccaagagacaaattgattgatttgttggtagagggaagagaagaccgcacagttgtctccattgttggaa |
22443144 |
T |
|
| Q |
111 |
agggaggacaaggaaaaacaactcttgcgaagaaggtttttgacgataacaagatcgttaaacactttgattgtcatgtatggatcagagtgtctcaatc |
210 |
Q |
| |
|
||||||| |||||||| ||||| || | | |||||||| | | ||| | ||||| |||||||| |||| | ||||||||| ||||||||||| |
|
|
| T |
22443143 |
tgggaggattgggaaaaaccactctagccagacaaatttttgacaaccaaaaggtagttaagcactttgactgtcttttatggatcatggtgtctcaatc |
22443044 |
T |
|
| Q |
211 |
atacaatatagaaggattgctgagggacatgttgcacaagttttacgaacaacaaggagcaaatctcccccaaagtattcatcaaatgaatcgagagtca |
310 |
Q |
| |
|
|| |||||| ||| | || |||||||||| ||| | |||||||| |||||||| | | || || || ||| | ||||||||| ||||| ||||| |
|
|
| T |
22443043 |
attcaatattgaaaaagtgttgagggacattatgctcgagttttacaaacaacaaaggaaagttcctcctcagagtctccatcaaatggatcgacagtca |
22442944 |
T |
|
| Q |
311 |
ttggttgatgaagtgaggaactacttgcaggaaaaaaggtatgttatagtttttgatgatgt |
372 |
Q |
| |
|
|| |||||||||||||| ||||||||||| ||||||||||||||| |||| ||||||||||| |
|
|
| T |
22442943 |
ttagttgatgaagtgagaaactacttgcaagaaaaaaggtatgttgtagtgtttgatgatgt |
22442882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 89 - 372
Target Start/End: Complemental strand, 22635929 - 22635646
Alignment:
| Q |
89 |
acaattgtcaccattgttggaaagggaggacaaggaaaaacaactcttgcgaagaaggtttttgacgataacaagatcgttaaacactttgattgtcatg |
188 |
Q |
| |
|
||||||||| |||| |||||| |||||||||||||||||| ||||| |||||||| ||||||||| | ||| |||| ||| |||||||||||| || |
|
|
| T |
22635929 |
acaattgtctccatctttggaatgggaggacaaggaaaaaccactctagcgaagaaagtttttgacaacccaaaggtcgtaaaatactttgattgtcgtg |
22635830 |
T |
|
| Q |
189 |
tatggatcagagtgtctcaatcatacaatatagaaggattgctgagggacatgttgcacaagttttacgaacaacaaggagcaaatctcccccaaagtat |
288 |
Q |
| |
|
||||||| | ||||||| | ||||||||| |||| | || || | ||||| ||| | |||||||| |||||||||| | | || || | ||| | |
|
|
| T |
22635829 |
tatggattacggtgtctcgaccatacaatacagaaaaagtgttgcgagacattatgctcgagttttacaaacaacaaggggaagttcctcctgagagtct |
22635730 |
T |
|
| Q |
289 |
tcatcaaatgaatcgagagtcattggttgatgaagtgaggaactacttgcaggaaaaaaggtatgttatagtttttgatgatgt |
372 |
Q |
| |
|
||||||||| ||||| ||||||| |||||||||||||| ||| |||| || | ||||||||||||| |||| ||||||||||| |
|
|
| T |
22635729 |
ccatcaaatggatcgaaagtcattagttgatgaagtgagaaaccactttcaaggaaaaaggtatgttttagtgtttgatgatgt |
22635646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 107 - 343
Target Start/End: Original strand, 22179475 - 22179711
Alignment:
| Q |
107 |
ggaaagggaggacaaggaaaaacaactcttgcgaagaaggtttttgacgataacaagatcgttaaacactttgattgtcatgtatggatcagagtgtctc |
206 |
Q |
| |
|
|||| |||||| ||||||||||||||||| || ||||| ||||||||| || | ||| || |||||||||||||| ||||||||| | |||||||| |
|
|
| T |
22179475 |
ggaatgggagggcaaggaaaaacaactctagccaagaaagtttttgacagcaaggatatcattggacactttgattgtcgtgtatggattacagtgtctc |
22179574 |
T |
|
| Q |
207 |
aatcatacaatatagaaggattgctgagggacatgttgcacaagttttacgaacaacaaggag-caaatctcccccaaagtattcatcaaatgaatcgag |
305 |
Q |
| |
|
||||||| ||| ||||||||| |||| |||||||||| ||| ||| | ||||| |||||| |||||| ||| | ||||| |||||||||||| | |
|
|
| T |
22179575 |
aatcatataatgctgaaggattgttgagagacatgttgctaaagatttgcaaacaaaaaggagtgaaatct-cccgagggtatttctcaaatgaatcggg |
22179673 |
T |
|
| Q |
306 |
agtcattggttgatgaagtgaggaactacttgcaggaa |
343 |
Q |
| |
|
|||||||| | |||||||||| || |||||||||||| |
|
|
| T |
22179674 |
agtcattgactaatgaagtgagaaattacttgcaggaa |
22179711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 172 - 253
Target Start/End: Complemental strand, 22615602 - 22615521
Alignment:
| Q |
172 |
acactttgattgtcatgtatggatcagagtgtctcaatcatacaatatagaaggattgctgagggacatgttgcacaagttt |
253 |
Q |
| |
|
|||||||||||||| ||||||||||| ||||||||||||||||| ||||||||| ||| ||||||||||||||| ||||||| |
|
|
| T |
22615602 |
acactttgattgtcgtgtatggatcacagtgtctcaatcatacagtatagaagggttgttgagggacatgttgcgcaagttt |
22615521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 112 - 372
Target Start/End: Complemental strand, 30989708 - 30989448
Alignment:
| Q |
112 |
gggaggacaaggaaaaacaactcttgcgaagaaggtttttgacgataacaagatcgttaaacactttgattgtcatgtatggatcagagtgtctcaatca |
211 |
Q |
| |
|
|||||| ||||| ||||| |||||| ||||||| ||||||||| | | || || || |||||||||||||| ||||||||||| ||||||||||||| |
|
|
| T |
30989708 |
gggagggcaaggtaaaaccactcttacgaagaaagtttttgacaacaggaatgtcattggacactttgattgtcgtgtatggatcatagtgtctcaatca |
30989609 |
T |
|
| Q |
212 |
tacaatatagaaggattgctgagggacatgttgcacaagttttacgaacaacaaggagcaaatctcccccaaag-tattcatcaaatgaatcgagagtca |
310 |
Q |
| |
|
|| | | | ||||| ||| ||||||||||||||| ||||||||| ||||| | | || | ||| | || || | |||| ||||||| |||||| |||| |
|
|
| T |
30989608 |
tatactgttgaagggttgttgagggacatgttgctaaagttttacaaacaaaacgaagaagatc-ctcctaaggatatttttcaaatggatcgagggtca |
30989510 |
T |
|
| Q |
311 |
ttggttgatgaagtgaggaactacttgcaggaaaaaaggtatgttatagtttttgatgatgt |
372 |
Q |
| |
|
||| |||||||||||| |||||||||| | |||||||||||| | || ||||||||||| |
|
|
| T |
30989509 |
ttgactgatgaagtgagaaactacttgcggttaaaaaggtatgtcgttgtgtttgatgatgt |
30989448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 1 - 253
Target Start/End: Complemental strand, 22431665 - 22431414
Alignment:
| Q |
1 |
attttgtatcgatgaagatgatgttgtaggctttgaagttccaagaaacatactaattgattggttggtagaggagagagaagtgcacacaattgtcacc |
100 |
Q |
| |
|
||||| ||| ||||||| ||||||||| || ||||||| |||||| ||||| | ||||||||| ||||| | | | ||||| || |||| | ||| || |
|
|
| T |
22431665 |
attttatatggatgaagctgatgttgtgggatttgaagagccaagagacatattgattgattggctggtaaatggaaaagaagagctcacagtggtctcc |
22431566 |
T |
|
| Q |
101 |
attgttggaaagggaggacaaggaaaaacaactcttgcgaagaaggtttttgacgataacaagatcgttaaacactttgattgtcatgtatggatcagag |
200 |
Q |
| |
|
||||| |||| |||||||| |||||||| ||||| | ||||| ||||||||| | |||| | || |||||||||||||||||| | ||||||||| || |
|
|
| T |
22431565 |
attgt-ggaatgggaggactgggaaaaaccactctaaccaagaaagtttttgacaacaacagggtccttaaacactttgattgtcgtttatggatcacag |
22431467 |
T |
|
| Q |
201 |
tgtctcaatcatacaatatagaaggattgctgagggacatgttgcacaagttt |
253 |
Q |
| |
|
|||||||| |||| |||||||| |||| || | | ||||||||||||||| |
|
|
| T |
22431466 |
tgtctcaaccatatgatatagaaaaattgttgcagaaaatgttgcacaagttt |
22431414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 101 - 267
Target Start/End: Complemental strand, 22437048 - 22436882
Alignment:
| Q |
101 |
attgttggaaagggaggacaaggaaaaacaactcttgcgaagaaggtttttgacgataacaagatcgttaaacactttgattgtcatgtatggatcagag |
200 |
Q |
| |
|
||||| |||| |||||| ||||||||||| ||||| || ||||| |||||||| | | ||| || | ||||| ||||| |||||||||||||||| || |
|
|
| T |
22437048 |
attgtaggaatgggagggcaaggaaaaactactctggccaagaaagtttttgagaacatcaaagtcttaaaacaatttgactgtcatgtatggatcacag |
22436949 |
T |
|
| Q |
201 |
tgtctcaatcatacaatatagaaggattgctgagggacatgttgcacaagttttacgaacaacaagg |
267 |
Q |
| |
|
||||||||||||||| || |||| |||| |||||||||| |||| | || ||||| |||||||||| |
|
|
| T |
22436948 |
tgtctcaatcatacagtaaagaaaaattgttgagggacattttgctcgagatttacaaacaacaagg |
22436882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 107 - 327
Target Start/End: Original strand, 22028058 - 22028278
Alignment:
| Q |
107 |
ggaaagggaggacaaggaaaaacaactcttgcgaagaaggtttttgacgataacaagatcgttaaacactttgattgtcatgtatggatcagagtgtctc |
206 |
Q |
| |
|
|||| |||||| ||||||||||||||||| || ||||| ||||||||| || | ||| | |||||||||||||| ||||||||| | |||||||| |
|
|
| T |
22028058 |
ggaatgggagggcaaggaaaaacaactctagccaagaaagtttttgacagcaaggatatcatgggacactttgattgtcgtgtatggattacagtgtctc |
22028157 |
T |
|
| Q |
207 |
aatcatacaatatagaaggattgctgagggacatgttgcacaagttttacgaacaacaaggagcaaatctcccccaaagtattcatcaaatgaatcgaga |
306 |
Q |
| |
|
||||||| ||| ||||||||| |||| |||||||||| ||| ||| | ||||| |||||| | || ||| | ||||| |||||||||||| || |
|
|
| T |
22028158 |
aatcatataattctgaaggattgttgagagacatgttgctaaaggtttgcaaacaaaaaggagtgacacttcccgagggtatttctcaaatgaatcggga |
22028257 |
T |
|
| Q |
307 |
gtcattggttgatgaagtgag |
327 |
Q |
| |
|
||||||| |||||||||||| |
|
|
| T |
22028258 |
gtcattgactgatgaagtgag |
22028278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 88 - 240
Target Start/End: Complemental strand, 22368339 - 22368187
Alignment:
| Q |
88 |
cacaattgtcaccattgttggaaagggaggacaaggaaaaacaactcttgcgaagaaggtttttgacgataacaagatcgttaaacactttgattgtcat |
187 |
Q |
| |
|
|||| ||||| |||||||||||| |||||||| |||||||| ||||| || ||||| ||||||||| | | ||| ||||||||||||||||||||| | |
|
|
| T |
22368339 |
cacagttgtctccattgttggaatgggaggactgggaaaaaccactctagccaagaaagtttttgacaaccaaaaggtcgttaaacactttgattgtcgt |
22368240 |
T |
|
| Q |
188 |
gtatggatcagagtgtctcaatcatacaatatagaaggattgctgagggacat |
240 |
Q |
| |
|
||||||||| || |||| | |||| |||| |||| |||||||| |||||| |
|
|
| T |
22368239 |
ttatggatcacggtttctcgaccatataataaagaaaaattgctgaaggacat |
22368187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 107 - 269
Target Start/End: Original strand, 21937211 - 21937373
Alignment:
| Q |
107 |
ggaaagggaggacaaggaaaaacaactcttgcgaagaaggtttttgacgataacaagatcgttaaacactttgattgtcatgtatggatcagagtgtctc |
206 |
Q |
| |
|
|||| |||||| ||||||||||| ||||| || ||||| | ||||||| || | ||||| |||||||||||||| ||||||||||| |||||||| |
|
|
| T |
21937211 |
ggaatgggagggcaaggaaaaaccactctagctaagaaagcttttgacagcaaggatgtcgttggacactttgattgtcgtgtatggatcacagtgtctc |
21937310 |
T |
|
| Q |
207 |
aatcatacaatatagaaggattgctgagggacatgttgcacaagttttacgaacaacaaggag |
269 |
Q |
| |
|
|| |||| || | ||||| ||| ||| ||||||||||| |||||||||| ||||| |||||| |
|
|
| T |
21937311 |
aagcatatgatgttgaagggttgttgaaggacatgttgctcaagttttacaaacaaaaaggag |
21937373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 107 - 372
Target Start/End: Original strand, 21945682 - 21945947
Alignment:
| Q |
107 |
ggaaagggaggacaaggaaaaacaactcttgcgaagaaggtttttgacgataacaagatcgttaaacactttgattgtcatgtatggatcagagtgtctc |
206 |
Q |
| |
|
|||| |||||| ||||||||||| ||||| || ||||| ||||||||| || | || || |||||||||||||| ||||||||||| ||||||| |
|
|
| T |
21945682 |
ggaatgggagggcaaggaaaaaccactctagccaagaaagtttttgacagcaaggatgtcatttgacactttgattgtcttgtatggatcactgtgtctc |
21945781 |
T |
|
| Q |
207 |
aatcatacaatatagaaggattgctgagggacatgttgcacaagttttacgaacaacaaggag-caaatctcccccaaagtattcatcaaatgaatcgag |
305 |
Q |
| |
|
||||||| || | ||||||||| ||||||||||||||| || || || ||||| |||||| |||| || ||| | || | |||||||||||||| |
|
|
| T |
21945782 |
aatcatatgatgttgaaggattgttgagggacatgttgctaaaacttcacaaacaaaaaggagacaaacct-cccgaggatacttctcaaatgaatcgag |
21945880 |
T |
|
| Q |
306 |
agtcattggttgatgaagtgaggaactacttgcaggaaaaaaggtatgttatagtttttgatgatgt |
372 |
Q |
| |
|
||| |||| |||||||||| || ||||||||| |||| ||||||||| | || ||||||||||| |
|
|
| T |
21945881 |
agttattgacaaatgaagtgagaaattacttgcagcaaaagaggtatgttgtcgtctttgatgatgt |
21945947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 107 - 327
Target Start/End: Original strand, 22187046 - 22187266
Alignment:
| Q |
107 |
ggaaagggaggacaaggaaaaacaactcttgcgaagaaggtttttgacgataacaagatcgttaaacactttgattgtcatgtatggatcagagtgtctc |
206 |
Q |
| |
|
|||| |||||| ||||||||||||||||| || ||||| ||||||||| || | ||| | |||||||||||||| ||||||||| | |||||||| |
|
|
| T |
22187046 |
ggaatgggagggcaaggaaaaacaactctagccaagaaagtttttgacagcaaggatatcatgggacactttgattgtcgtgtatggattacagtgtctc |
22187145 |
T |
|
| Q |
207 |
aatcatacaatatagaaggattgctgagggacatgttgcacaagttttacgaacaacaaggagcaaatctcccccaaagtattcatcaaatgaatcgaga |
306 |
Q |
| |
|
||||||| ||| ||||||||| |||| |||||||||| ||| ||| | ||||| |||||| | | ||| | ||||| |||||||||||| || |
|
|
| T |
22187146 |
aatcatataattctgaaggattgttgagagacatgttgctaaaggtttgcaaacaaaaaggagagacacctcccgagggtatttctcaaatgaatcggga |
22187245 |
T |
|
| Q |
307 |
gtcattggttgatgaagtgag |
327 |
Q |
| |
|
||||||| |||||||||||| |
|
|
| T |
22187246 |
gtcattgactgatgaagtgag |
22187266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 107 - 350
Target Start/End: Original strand, 22052791 - 22053034
Alignment:
| Q |
107 |
ggaaagggaggacaaggaaaaacaactcttgcgaagaaggtttttgacgataacaagatcgttaaacactttgattgtcatgtatggatcagagtgtctc |
206 |
Q |
| |
|
|||| |||||| ||||||||||||||||| || ||||| ||||||||| || | ||| || ||| |||||||||| |||||||| | |||||||| |
|
|
| T |
22052791 |
ggaatgggagggcaaggaaaaacaactctagccaagaaagtttttgacagcaaggatatcattggacattttgattgtcgggtatggattacagtgtctc |
22052890 |
T |
|
| Q |
207 |
aatcatacaatatagaaggattgctgagggacatgttgcacaagttttacgaacaacaaggagcaaatctcccccaaagtattcatcaaatgaatcgaga |
306 |
Q |
| |
|
||||||| || | ||||| ||| ||||||| ||||||| || ||||| ||||| |||||| |||| || || |||||| |||||||| |||||| |
|
|
| T |
22052891 |
aatcatatgatgttgaagggttgttgagggaaatgttgctaaaactttacaaacaaaaaggagacaatccccatcagagtatttatcaaatggatcgagg |
22052990 |
T |
|
| Q |
307 |
gtcattggttgatgaagtgaggaactacttgcaggaaaaaaggt |
350 |
Q |
| |
|
||||| |||||||||||| || ||| ||||| |||| |||| |
|
|
| T |
22052991 |
aacattgactgatgaagtgagaaattacctgcagaaaaagaggt |
22053034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 281 - 372
Target Start/End: Complemental strand, 22368161 - 22368070
Alignment:
| Q |
281 |
caaagtattcatcaaatgaatcgagagtcattggttgatgaagtgaggaactacttgcaggaaaaaaggtatgttatagtttttgatgatgt |
372 |
Q |
| |
|
|||||| ||||||||||| || || ||| ||| |||||||||||||| ||||||||||| | ||||||||| ||| |||| ||||||||||| |
|
|
| T |
22368161 |
caaagtcttcatcaaatggatggaaagttattagttgatgaagtgagaaactacttgcaaggaaaaaggtacgttgtagtgtttgatgatgt |
22368070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 107 - 372
Target Start/End: Original strand, 22115143 - 22115408
Alignment:
| Q |
107 |
ggaaagggaggacaaggaaaaacaactcttgcgaagaaggtttttgacgataacaagatcgttaaacactttgattgtcatgtatggatcagagtgtctc |
206 |
Q |
| |
|
|||| |||||| ||||||||||| ||||| | ||||| ||||||||| || | ||| || |||||||||||||| ||||||||||| |||||||| |
|
|
| T |
22115143 |
ggaatgggagggcaaggaaaaaccactctatcaaagaaagtttttgacagcaaggatatcattggacactttgattgtcgtgtatggatcacagtgtctc |
22115242 |
T |
|
| Q |
207 |
aatcatacaatatagaaggattgctgagggacatgttgcacaagttttacgaacaacaaggagcaaatctcccccaaagtattcatcaaatgaatcgaga |
306 |
Q |
| |
|
||||||| | | ||||| ||| ||||||| ||||||| || ||||| ||||| |||||| |||| || |||||| |||||||| |||||| |
|
|
| T |
22115243 |
aatcatatgaagttgaagggttgttgagggatatgttgccaaaaatttacaaacaagaaggagacaatccaccttcgagtatttatcaaatggatcgagg |
22115342 |
T |
|
| Q |
307 |
gtcattggttgatgaagtgaggaactacttgcaggaaaaaaggtatgttatagtttttgatgatgt |
372 |
Q |
| |
|
| ||| |||||||||||| || ||||||||| |||| ||||| ||| | || ||||||||||| |
|
|
| T |
22115343 |
attattaactgatgaagtgagaaaatacttgcagaaaaagaggtacgttgtcgtgtttgatgatgt |
22115408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #21
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 107 - 372
Target Start/End: Complemental strand, 18967393 - 18967130
Alignment:
| Q |
107 |
ggaaagggaggacaaggaaaaacaactcttgcgaagaaggtttttgacgataacaagatcgttaaacactttgattgtcatgtatggatcagagtgtctc |
206 |
Q |
| |
|
|||| |||||| ||||||||||||||||| || |||| |||| |||| | || | || || ||||||| |||||| | |||||||||| |||||| |
|
|
| T |
18967393 |
ggaatgggagggcaaggaaaaacaactctagcaaagagagtttctgacaacaaggatgtcattggacactttaattgtcttatatggatcag--tgtctc |
18967296 |
T |
|
| Q |
207 |
aatcatacaatatagaaggattgctgagggacatgttgcacaagttttacgaacaacaaggagcaaatctcccccaaagtattcatcaaatgaatcgaga |
306 |
Q |
| |
|
||||||| || ||||||| ||| | || ||||||||| |||| ||| ||||| ||||| ||| ||| || |||||| |||||||| ||||||| |
|
|
| T |
18967295 |
aatcatatgatgtagaagggttgttaagcgacatgttgataaagtgatacaaacaaaaaggaaaggatccccctcagagtatttatcaaatggatcgaga |
18967196 |
T |
|
| Q |
307 |
gtcattggttgatgaagtgaggaactacttgcaggaaaaaaggtatgttatagtttttgatgatgt |
372 |
Q |
| |
|
||||||| |||||||| || |||||||| | ||| || ||||||||| | || ||||||||||| |
|
|
| T |
18967195 |
gtcattgacagatgaagtaagaaactacttacgggataagaggtatgttgttgtgtttgatgatgt |
18967130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #22
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 107 - 245
Target Start/End: Original strand, 22034575 - 22034713
Alignment:
| Q |
107 |
ggaaagggaggacaaggaaaaacaactcttgcgaagaaggtttttgacgataacaagatcgttaaacactttgattgtcatgtatggatcagagtgtctc |
206 |
Q |
| |
|
|||| |||||| ||||||||||||||||| || ||||| ||||||||| || | ||| | ||||||||||| || ||||||||| | |||||||| |
|
|
| T |
22034575 |
ggaatgggagggcaaggaaaaacaactctagccaagaaagtttttgacagcaaggatatcatgggacactttgattatcgtgtatggattacagtgtctc |
22034674 |
T |
|
| Q |
207 |
aatcatacaatatagaaggattgctgagggacatgttgc |
245 |
Q |
| |
|
||||||| ||| ||||||||| |||| |||||||||| |
|
|
| T |
22034675 |
aatcatataattctgaaggattgttgagagacatgttgc |
22034713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #23
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 88 - 372
Target Start/End: Complemental strand, 22354240 - 22353954
Alignment:
| Q |
88 |
cacaattgtcaccattgttggaaagggaggacaaggaaaaacaactcttgcgaagaaggtttttgacgataacaagatcgttaaacactttgattgtcat |
187 |
Q |
| |
|
|||| ||||| |||||||||||| |||||||| |||||||| ||||| || | || ||||||||| | | ||| | ||||| ||||||||||| || |
|
|
| T |
22354240 |
cacagttgtctccattgttggaatgggaggactgggaaaaaccactctagccagaaaagtttttgacaaccaaaaggtagttaagaactttgattgttat |
22354141 |
T |
|
| Q |
188 |
gtat--ggatcagagtgtctcaatcatacaatatagaaggattgctgagggacatgttgcacaagttttacgaacaac-aaggagcaaatctcccccaaa |
284 |
Q |
| |
|
|||| |||||| || |||| | ||||||| |||||| | || |||||||||| |||| || ||||| |||||| ||||| | ||| || || | |
|
|
| T |
22354140 |
gtatatggatcacggtatctcgaccatacaacatagaaaaagtgttgagggacattttgctggagatttacaaacaacgaaggaa-agatcctcctcaga |
22354042 |
T |
|
| Q |
285 |
gtattcatcaaatgaatcgagagtcattggttgatgaagtgaggaactacttgcaggaaaaaaggtatgttatagtttttgatgatgt |
372 |
Q |
| |
|
|| | ||||||||| ||||| || |||| |||||||||||||| ||| ||||||| | ||||||||| ||| |||| |||||| |||| |
|
|
| T |
22354041 |
gtctccatcaaatggatcgaaagccattagttgatgaagtgagaaacaacttgcaaggaaaaaggtacgttgtagtgtttgataatgt |
22353954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #24
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 176
Target Start/End: Complemental strand, 22632379 - 22632204
Alignment:
| Q |
1 |
attttgtatcgatgaagatgatgttgtaggctttgaagttccaagaaacatactaattgattggttggtagaggagagagaagtgcacacaattgtcacc |
100 |
Q |
| |
|
||||| ||| ||||||| ||||||||| || ||||||| |||| | | | ||||||| ||||| ||||||||| |||| || | |||| ||||| || |
|
|
| T |
22632379 |
attttatatggatgaagctgatgttgtgggatttgaagagccaatagagaaactaattaattggctggtagagggaagagcagatcgcacagttgtctcc |
22632280 |
T |
|
| Q |
101 |
attgttggaaagggaggacaaggaaaaacaactcttgcgaagaaggtttttgacgataacaagatcgttaaacact |
176 |
Q |
| |
|
||| |||||| |||||||| || ||||| ||||| || ||||| ||||||||| | |||||||||||||||| |
|
|
| T |
22632279 |
attattggaatgggaggactggggaaaaccactctagccaagaaagtttttgacaaccgaaagatcgttaaacact |
22632204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #25
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 107 - 224
Target Start/End: Complemental strand, 22657474 - 22657357
Alignment:
| Q |
107 |
ggaaagggaggacaaggaaaaacaactcttgcgaagaaggtttttgacgataacaagatcgttaaacactttgattgtcatgtatggatcagagtgtctc |
206 |
Q |
| |
|
|||| |||||| ||||||||||| |||||||| || || ||||||||| || || | ||| ||||||||| |||| ||| ||||||| |||||| | |
|
|
| T |
22657474 |
ggaatgggagggcaaggaaaaactactcttgctaaaaaagtttttgacagcaaagaggttgttggacactttgaatgtcgtgtttggatcacagtgtcac |
22657375 |
T |
|
| Q |
207 |
aatcatacaatatagaag |
224 |
Q |
| |
|
|||| ||||||||||||| |
|
|
| T |
22657374 |
aatcttacaatatagaag |
22657357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 107 - 245
Target Start/End: Original strand, 21930479 - 21930617
Alignment:
| Q |
107 |
ggaaagggaggacaaggaaaaacaactcttgcgaagaaggtttttgacgataacaagatcgttaaacactttgattgtcatgtatggatcagagtgtctc |
206 |
Q |
| |
|
|||| |||||| ||||||||||||||||| || ||||| ||||||||| || | ||| || ||| ||| ||| | |||||||||| |||||||| |
|
|
| T |
21930479 |
ggaatgggagggcaaggaaaaacaactctagccaagaaagtttttgacagcaaggatatcattggacattttcatttccgagtatggatcacagtgtctc |
21930578 |
T |
|
| Q |
207 |
aatcatacaatatagaaggattgctgagggacatgttgc |
245 |
Q |
| |
|
||||||| || | ||||| ||| ||||||||||||||| |
|
|
| T |
21930579 |
aatcatatgatgttgaagggttgttgagggacatgttgc |
21930617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 172 - 269
Target Start/End: Complemental strand, 22648501 - 22648404
Alignment:
| Q |
172 |
acactttgattgtcatgtatggatcagagtgtctcaatcatacaatatagaaggattgctgagggacatgttgcacaagttttacgaacaacaaggag |
269 |
Q |
| |
|
||||||||| | || ||||||||||| ||||| ||||||||| ||| |||||| |||||||| | ||||||| | || ||||| ||||| |||||| |
|
|
| T |
22648501 |
acactttgaatttcgtgtatggatcaaagtgttgcaatcatactatacagaagggttgctgagaggcatgttgaatgagctttacaaacaaaaaggag |
22648404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 122 - 372
Target Start/End: Complemental strand, 29610961 - 29610710
Alignment:
| Q |
122 |
ggaaaaacaactcttgcgaagaaggtttttgacgataacaagatcgttaaacactttgattgtcatgtatggatcagagtgtctcaatcatacaatatag |
221 |
Q |
| |
|
|||||||| ||||| | ||||| ||||||||| |||||| ||||| |||||||||| || ||||||||||| ||| || |||||||||||||||| |
|
|
| T |
29610961 |
ggaaaaactactctaactaagaaagtttttgac---aacaaggtcgttgaacactttgacaatcgtgtatggatcacagtatcacaatcatacaatatag |
29610865 |
T |
|
| Q |
222 |
aaggattgctgagggacatgttgcacaag-ttttacgaacaacaaggagcaaatctcccccaaagtattcatcaaatgaatcgaga---gtcattggttg |
317 |
Q |
| |
|
|||||||||| |||| ||||||| | ||| |||||| ||||| | |||| ||| || ||||||||| ||||||| | ||||| ||| || || | |
|
|
| T |
29610864 |
aaggattgctaaggggcatgttggagaagtttttacaaacaaaagggagatgatcctcctcaaagtatttctcaaatggagcgagagtcgtcgttagtcg |
29610765 |
T |
|
| Q |
318 |
atgaagtgaggaactacttgcaggaaaaaaggtatgttatagtttttgatgatgt |
372 |
Q |
| |
|
|||||||||| || ||||||||||| |||||||| || |||| ||||| ||||| |
|
|
| T |
29610764 |
atgaagtgagaaattacttgcaggagaaaaggtaccttgtagtgtttgacgatgt |
29610710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 172 - 269
Target Start/End: Original strand, 34980285 - 34980382
Alignment:
| Q |
172 |
acactttgattgtcatgtatggatcagagtgtctcaatcatacaatatagaaggattgctgagggacatgttgcacaagttttacgaacaacaaggag |
269 |
Q |
| |
|
||||||||| |||| ||||||||||| |||||| |||||||||||||| |||| ||||||||| ||||||| | ||| ||||||||||| |||||| |
|
|
| T |
34980285 |
acactttgaatgtcgtgtatggatcacagtgtcacaatcatacaatattgaagtattgctgagacgcatgttgaagaagctttacgaacaaaaaggag |
34980382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 172 - 224
Target Start/End: Complemental strand, 2305828 - 2305776
Alignment:
| Q |
172 |
acactttgattgtcatgtatggatcagagtgtctcaatcatacaatatagaag |
224 |
Q |
| |
|
||||||||| |||| ||||||||||| | |||| ||||||||||||||||||| |
|
|
| T |
2305828 |
acactttgaatgtcgtgtatggatcacaatgtcacaatcatacaatatagaag |
2305776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University