View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18743_low_24 (Length: 360)
Name: NF18743_low_24
Description: NF18743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18743_low_24 |
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Alignment Details
Target: chr6 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 24 - 345
Target Start/End: Original strand, 6185125 - 6185446
Alignment:
| Q |
24 |
gtaaacacatcttccccagtttaaaactgttactatagatgcaaaattgtcatctaatataacaatatctgaactctcttttgctacttctgtaccttga |
123 |
Q |
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|||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| |
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| T |
6185125 |
gtaaacacatcttccccagtttaacactgttacgatagatgcaaaattgtcatctaatataacaatatctgaactctcttttgcaacttcagtaccttga |
6185224 |
T |
|
| Q |
124 |
attcccattgaaagaccgatatcggcttctttcaatgccggtgcatcgtttgttccatctcctgttacagcaactacatgacctttttgttttaagcatt |
223 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6185225 |
attcccattgaaagtccgatatcggcttctttcaatgccggtgcatcgtttgttccatctcctgttacagcaactacatgacctttttgttttaagcatt |
6185324 |
T |
|
| Q |
224 |
gaaccattagaagtttgtcaaatggagatgatcttgccatcacacatattttttcaaccttttctaatctctcttcgtgcgtaaagttgcgaaactgttc |
323 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
6185325 |
gaaccattagaagtttgtcaaatggagatgatcttgccatcacacatattttttcaaccttttctaatctctcttcgtgcgtaaagttgcgaaattgttc |
6185424 |
T |
|
| Q |
324 |
gccttcaaccaccgtttcatct |
345 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
6185425 |
gccttcaaccaccgtttcatct |
6185446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 24 - 344
Target Start/End: Original strand, 4236001 - 4236321
Alignment:
| Q |
24 |
gtaaacacatcttccccagtttaaaactgttactatagatgcaaaattgtcatctaatataacaatatctgaactctcttttgctacttctgtaccttga |
123 |
Q |
| |
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|||||||||||||||||| |||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
4236001 |
gtaaacacatcttccccaatttataactgttacaatagatgcaaaattgtcatctaatataacaatatctgaactctcttttgctacttcagtaccttga |
4236100 |
T |
|
| Q |
124 |
attcccattgaaagaccgatatcggcttctttcaatgccggtgcatcgtttgttccatctcctgttacagcaactacatgacctttttgttttaagcatt |
223 |
Q |
| |
|
|||||||||||||| || ||||| |||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
4236101 |
attcccattgaaagtccaatatcagcttctttcaatgctggtgcatcgtttgttccgtctccggttacagcaactacatgacctttttgttttaagcatt |
4236200 |
T |
|
| Q |
224 |
gaaccattagaagtttgtcaaatggagatgatcttgccatcacacatattttttcaaccttttctaatctctcttcgtgcgtaaagttgcgaaactgttc |
323 |
Q |
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| |||||||||||||| ||||||||||| ||||||||||||||| | ||||| ||||| || | || ||||||||||| || ||||| ||||| ||||| |
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| T |
4236201 |
gtaccattagaagtttatcaaatggagaagatcttgccatcacagagattttctcaactttcgccaacctctcttcgtgtgtgaagttacgaaattgttc |
4236300 |
T |
|
| Q |
324 |
gccttcaaccaccgtttcatc |
344 |
Q |
| |
|
|||||||||||| |||||||| |
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| T |
4236301 |
gccttcaaccactgtttcatc |
4236321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 88; Significance: 3e-42; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 24 - 179
Target Start/End: Original strand, 19592884 - 19593039
Alignment:
| Q |
24 |
gtaaacacatcttccccagtttaaaactgttactatagatgcaaaattgtcatctaatataacaatatctgaactctcttttgctacttctgtaccttga |
123 |
Q |
| |
|
|||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||| |
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| T |
19592884 |
gtaaacacatcttccccaatttaaaattgttactatagatgcaaaattgtcatctaatataacaatatctgagctctcttttgcaacttcggtaccttga |
19592983 |
T |
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| Q |
124 |
attcccattgaaagaccgatatcggcttctttcaatgccggtgcatcgtttgttcc |
179 |
Q |
| |
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||| |||| ||||| | |||| |||||||||| ||| | |||||| ||| |||| |
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|
| T |
19592984 |
atttccatggaaagttcaatattagcttctttcagtgctgatgcatcatttcttcc |
19593039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 24 - 263
Target Start/End: Original strand, 38356945 - 38357184
Alignment:
| Q |
24 |
gtaaacacatcttccccagtttaaaactgttactatagatgcaaaattgtcatctaatataacaatatctgaactctcttttgctacttctgtaccttga |
123 |
Q |
| |
|
|||||||||||||||||| ||||||| ||| | | ||| || ||||| ||||| || || ||||| ||||| ||||| || ||||| || ||||| |
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| T |
38356945 |
gtaaacacatcttccccaccttaaaacagttgcaacagaattgaagttgtcgtctaagatgacgatatcggaactttctttggcgacttcggttccttgg |
38357044 |
T |
|
| Q |
124 |
attcccattgaaagaccgatatcggcttctttcaatgccggtgcatcgtttgttccatctcctgttacagcaactacatgacctttttgttttaagcatt |
223 |
Q |
| |
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|||||||| ||||| || ||||| |||||||| || || |||||||||||||| || || ||||| || ||||||||||||||||| | | ||||||||| |
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| T |
38357045 |
attcccatagaaagtcctatatcagcttcttttaaggcaggtgcatcgtttgtgccgtcgcctgtgaccgcaactacatgacctttctttcttaagcatt |
38357144 |
T |
|
| Q |
224 |
gaaccattagaagtttgtcaaatggagatgatcttgccat |
263 |
Q |
| |
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| ||||| | ||||||||| | || |||||||||||||| |
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| T |
38357145 |
gcaccatcaaaagtttgtccataggggatgatcttgccat |
38357184 |
T |
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