View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18743_low_27 (Length: 345)
Name: NF18743_low_27
Description: NF18743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18743_low_27 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 254; Significance: 1e-141; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 1 - 328
Target Start/End: Complemental strand, 49254957 - 49254615
Alignment:
| Q |
1 |
agagacagcacaaagagagatagcaatagctgtgctagaaagagaaagtttacacaaatgaccaaccatcatcattgaaataatttgtagaaaatattgt |
100 |
Q |
| |
|
||||||| |||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49254957 |
agagacaacacagagagagatagcaatagctgtgctagaaagagaaagtttacccaaatgaccaaccatcatcattgaaataatttgtagaaaatattgt |
49254858 |
T |
|
| Q |
101 |
gacaaagttacactaatcataggcaatgctagaaaacaaacatctttcacctcttgaaaaaatacacgccatgttatgcttcttgaac---caccctctg |
197 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |
|
|
| T |
49254857 |
gacaaagttacactaatcataggcaatgctagaaaacaaacatctttcacctcttgaaaaaatacaccccatgttatgcttcttgaaccagcaccctctc |
49254758 |
T |
|
| Q |
198 |
tgtctttctctaacaaacctttatccatattttctagcccagaaaattgaa-------------tacattaatattgggatttgaatacgttggtggaag |
284 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||| |
|
|
| T |
49254757 |
tgtctttctctaacaaacctttttccatattttctagcccagaaaattgaatatgtgacaaagttacattaatatt-ggatttgaatacgttggtggaag |
49254659 |
T |
|
| Q |
285 |
ttgagattattattgaaattggaataaacaatgttcagttcaca |
328 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49254658 |
ttgagattattattgaaattggaataaacaatgttcagttcaca |
49254615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 49267219 - 49266985
Alignment:
| Q |
1 |
agagacagcacaaagagagatagcaatagctgtgctagaaagagaaagtttacacaaatgaccaaccatcatcattgaaataatttgtagaaaatattgt |
100 |
Q |
| |
|
||||||| |||| ||||||||||||||||||||||||||||||| |||||||| |||| |||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
49267219 |
agagacaccacagagagagatagcaatagctgtgctagaaagagcaagtttacccaaacgaccaaccattatcattgaaataatttgtagaaaatattgt |
49267120 |
T |
|
| Q |
101 |
gacaaagttacactaatcataggcaatgctagaaaacaaacatctttcacctcttgaaaaaatacacgccatgttatgcttcttgaaccaccctctgtgt |
200 |
Q |
| |
|
|||| ||| || |||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| ||| ||| |
|
|
| T |
49267119 |
gacagagtgacggcgatcataggcagagctagaaaacaaacatctttcacctcttgaaaaaatacaccccatgttatgcttcttgaatcaccttctctgt |
49267020 |
T |
|
| Q |
201 |
ctttctctaacaaacctttatccatattttctagc |
235 |
Q |
| |
|
|||||||||||||||| || ||||||||||||||| |
|
|
| T |
49267019 |
ctttctctaacaaacccttttccatattttctagc |
49266985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 1 - 179
Target Start/End: Complemental strand, 49271625 - 49271447
Alignment:
| Q |
1 |
agagacagcacaaagagagatagcaatagctgtgctagaaagagaaagtttacacaaatgaccaaccatcatcattgaaataatttgtagaaaatattgt |
100 |
Q |
| |
|
||||||| || | ||||||||||||||||||||| ||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49271625 |
agagacaccatagagagagatagcaatagctgtggtagaaagagcaagtttacccaaatgaccaaccatcatcattgaaataatttgtagaaaatattgt |
49271526 |
T |
|
| Q |
101 |
gacaaagttacactaatcataggcaatgctagaaaacaaacatctttcacctcttgaaaaaatacacgccatgttatgc |
179 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||| |||||||| |||||||||| ||| |||| ||||| ||||| |
|
|
| T |
49271525 |
gacaaagttacactaatcataggcaaagctagaaaaccaacatcttctacctcttgaacaaacacaccccatgatatgc |
49271447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 1 - 143
Target Start/End: Original strand, 49274615 - 49274761
Alignment:
| Q |
1 |
agagacagcacaaagagagatagca----atagctgtgctagaaagagaaagtttacacaaatgaccaaccatcatcattgaaataatttgtagaaaata |
96 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49274615 |
agagacagcacaaagagagatagcaagcaatagctgtgctagaaagagaaagtttacccaaatgaccaaccatcatcattgaaataatttgtagaaaata |
49274714 |
T |
|
| Q |
97 |
ttgtgacaaagttacactaatcataggcaatgctagaaaacaaacat |
143 |
Q |
| |
|
||||||||||||||||||| |||||||||| |||||||||| ||||| |
|
|
| T |
49274715 |
ttgtgacaaagttacactagtcataggcaaagctagaaaaccaacat |
49274761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University