View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18743_low_29 (Length: 340)
Name: NF18743_low_29
Description: NF18743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18743_low_29 |
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Alignment Details
Target: chr7 (Bit Score: 291; Significance: 1e-163; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 11 - 325
Target Start/End: Complemental strand, 24909427 - 24909113
Alignment:
| Q |
11 |
gatgaaaactaaaagctttagctataactcattgagatctgctactggagattttcatccttcaagcaaaattggtggaggaggttatggagttgtctac |
110 |
Q |
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| T |
24909427 |
gatgaaaactaaaagctttagctataactcattgagatctgctacgggagattttcatccttcatgcaaaattggtggaggagggtatggagttgtctac |
24909328 |
T |
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| Q |
111 |
aaggttaggatcataaccgatgcttttttcatcttttgttttgtcttatttcttagtgcttactacctgaaattaatttgtgtcattgtcattaacattt |
210 |
Q |
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| T |
24909327 |
aaggttaggatcataaccaatgcttttttcatcttttgttttgtcttatttcttagtgcttactacccgaaattaatttgtgtcattgtcattaacattt |
24909228 |
T |
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| Q |
211 |
gtagggtgttttaagggatggtacgcaagtcgctatcaagtctctttctgtagagtctaaacaaggaactcacgaatttatgacagaaattgctatgata |
310 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24909227 |
gtagggtgttttaagggatggtactcaagtcgctatcaagtctctttctgtagagtctaaacaaggaactcacgaatttatgacagaaattgctatgata |
24909128 |
T |
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| Q |
311 |
tctaatatacaacat |
325 |
Q |
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||||||||||||||| |
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| T |
24909127 |
tctaatatacaacat |
24909113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 11 - 325
Target Start/End: Complemental strand, 24894784 - 24894468
Alignment:
| Q |
11 |
gatgaaaactaaaagctttagctataactcattgagatctgctactggagattttcatccttcaagcaaaattggtggaggaggttatggagttgtctac |
110 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||| |||||||| ||||||||||||||| |
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| T |
24894784 |
gatgaaaactaaaagctttagctataactcattgagatccgctactggagattttcatccttcatgcaaaattggcggaggaggctatggagttgtctac |
24894685 |
T |
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| Q |
111 |
aaggttaggatcataaccgatgcttttttca-tcttttgtttt-gtcttatttcttagtgcttactacctgaaattaatttgtgtcattgtcattaacat |
208 |
Q |
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|||||||||||||||||| |||||||||| ||||||||||| ||| |||| |||||||||||| ||| |||||| |||||| ||| |||||||||||| |
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| T |
24894684 |
aaggttaggatcataaccaatgcttttttttgtcttttgtttttgtcatattgcttagtgcttaccacccgaaattcatttgtttcactgtcattaacat |
24894585 |
T |
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| Q |
209 |
ttgtagggtgttttaagggatggtacgcaagtcgctatcaagtctctttctgtagagtctaaacaaggaactcacgaatttatgacagaaattgctatga |
308 |
Q |
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||| |||| ||||||||||||||||| ||||||||||||||||| |||||||||||||| |||||||||||||| ||||||||||||||||||||||||| |
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| T |
24894584 |
ttgcagggagttttaagggatggtactcaagtcgctatcaagtcactttctgtagagtcgaaacaaggaactcatgaatttatgacagaaattgctatga |
24894485 |
T |
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| Q |
309 |
tatctaatatacaacat |
325 |
Q |
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||||||||||||||||| |
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| T |
24894484 |
tatctaatatacaacat |
24894468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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