View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18743_low_31 (Length: 303)
Name: NF18743_low_31
Description: NF18743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18743_low_31 |
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Alignment Details
Target: chr2 (Bit Score: 174; Significance: 1e-93; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 34 - 287
Target Start/End: Complemental strand, 11918849 - 11918589
Alignment:
| Q |
34 |
ttaactacacaatctaaaagacaacaattgtct-------ctacaaataagttttttcctccaaaacaaacgtaaacactactatagtataaatcatcat |
126 |
Q |
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|||||||| |||||||||||||||||||||||| || | |||||||||||||||||| ||||||||||||||||||| ||||||| ||||||| |
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| T |
11918849 |
ttaactacccaatctaaaagacaacaattgtctattgtctcttgatataagttttttcctccaacacaaacgtaaacactactacagtataattcatcat |
11918750 |
T |
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| Q |
127 |
aataaccacttcaataacaaggtctcttgagtttactgnnnnnnngtaccacgaccttgtgacgatttccaaatccaattaactactaaacaaaaaatta |
226 |
Q |
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|||||||| | ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
11918749 |
aataaccattacaataacaaggtctcttgagtttactgtttttttgtaccacgaccttgtgacgatttccaaatccaattaactgctaaacaaaaaatta |
11918650 |
T |
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| Q |
227 |
tagaaatcaaagatttctcaatcactataattctaactctatccacataaccaagcacagg |
287 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11918649 |
tagaaatcaaagatttctcaatcactataattctaactctatccacataaccaagcacagg |
11918589 |
T |
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