View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18743_low_32 (Length: 302)
Name: NF18743_low_32
Description: NF18743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18743_low_32 |
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Alignment Details
Target: chr5 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 1 - 285
Target Start/End: Original strand, 17754700 - 17754984
Alignment:
| Q |
1 |
tccttaggtctttgccaggctttgtaattagccttccaatggattggaggtcccgaaagcacccaataaccgccaggtcttagaactcggtcaacttcca |
100 |
Q |
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| T |
17754700 |
tccttaggtctttgccaggctttgtaattagccttccaatggattggaggtcccgaaagcacccaataaccgccaggtcttagaactcggtcaacttcca |
17754799 |
T |
|
| Q |
101 |
tcatataaatcccatctgccaataacaacccaagatgcactttccttatttactggaaatacttcagaagaaaaattatagttcttaatgtaaatttctc |
200 |
Q |
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| T |
17754800 |
tcaaataaatcccatctgccaataacaacccaagatgcactttccttatttactggaaatacttcagaagaaaaattatagttcttaatgtaaatttctc |
17754899 |
T |
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| Q |
201 |
accatttgatccccaaggaattaagcaacgagaacaatgcgccatatcaaaggctccagatggataaggcaactttatggttcct |
285 |
Q |
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| T |
17754900 |
accatttgatccccaaggaattaagcaacgagaacaatgcgccatatcaaaggctccagatggataaggcaactttatggttcct |
17754984 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 24326685 - 24326567
Alignment:
| Q |
1 |
tccttaggtctttgccaggctttgtaattagccttccaatggattggaggtcccgaaagcacccaataaccgccaggtcttagaactcggtcaacttcca |
100 |
Q |
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| T |
24326685 |
tcctttggtctctgccatggtttgtagttgaccttccaattgattggaggaccagaaagcacccaataaccaccaggccttagaactctatcaacttcca |
24326586 |
T |
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| Q |
101 |
tcatataaatcccatctgc |
119 |
Q |
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| T |
24326585 |
tcatatacattccatctgc |
24326567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 196 - 284
Target Start/End: Complemental strand, 24326472 - 24326384
Alignment:
| Q |
196 |
ttctcaccatttgatccccaaggaattaagcaacgagaacaatgcgccatatcaaaggctccagatggataaggcaactttatggttcc |
284 |
Q |
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|||| |||||||| |||||| ||||| || || ||||||||||| ||||| || ||||||| |||||||| ||||||||||||||||| |
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| T |
24326472 |
ttcttaccatttgctccccatggaatcaaacagcgagaacaatgagccatgtcgaaggctcttgatggatatggcaactttatggttcc |
24326384 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 196 - 271
Target Start/End: Complemental strand, 14186575 - 14186500
Alignment:
| Q |
196 |
ttctcaccatttgatccccaaggaattaagcaacgagaacaatgcgccatatcaaaggctccagatggataaggca |
271 |
Q |
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| T |
14186575 |
ttctcaccatttgcaccccatggaatcaagcagcgagaacaatgtgccatgtcaaaagctccagaaggaaaaggca |
14186500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 33 - 104
Target Start/End: Complemental strand, 14187000 - 14186929
Alignment:
| Q |
33 |
cttccaatggattggaggtcccgaaagcacccaataaccgccaggtcttagaactcggtcaacttccatcat |
104 |
Q |
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| T |
14187000 |
cttccagttgattggaggaccagaaagtatccaataaccaccaggtctaagaactcggtcaacttccttcat |
14186929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 211 - 269
Target Start/End: Original strand, 28639768 - 28639826
Alignment:
| Q |
211 |
ccccaaggaattaagcaacgagaacaatgcgccatatcaaaggctccagatggataagg |
269 |
Q |
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| T |
28639768 |
ccccaaggaattaggcaacgagaacaatgagccatgtcaaaggctctagaagggtaagg |
28639826 |
T |
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