View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18743_low_34 (Length: 291)

Name: NF18743_low_34
Description: NF18743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18743_low_34
NF18743_low_34
[»] chr8 (8 HSPs)
chr8 (1-279)||(3013773-3014051)
chr8 (9-279)||(2928731-2929001)
chr8 (9-279)||(2945372-2945642)
chr8 (94-279)||(2919229-2919414)
chr8 (19-241)||(37794138-37794360)
chr8 (175-254)||(2913170-2913250)
chr8 (124-183)||(2941821-2941880)
chr8 (16-48)||(2941948-2941980)
[»] chr6 (1 HSPs)
chr6 (1-279)||(4917454-4917732)
[»] chr3 (1 HSPs)
chr3 (9-279)||(1508114-1508378)
[»] chr2 (1 HSPs)
chr2 (19-241)||(28023151-28023373)


Alignment Details
Target: chr8 (Bit Score: 271; Significance: 1e-151; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 1 - 279
Target Start/End: Original strand, 3013773 - 3014051
Alignment:
Q  1 tcatcaccaagaaatcaaacaaaagggtacgttgggaaagtcaaagttgcaagtttatcatccagaagatggatggagttcttggtgattcattgaagta 100  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3013773 tcattaccaagaaatcaaacaaaagggtacgttgggaaagtcaaagttgcaagtttatcatccagaagatggatggagttcttggtgattcattgaagta 3013872  T
Q  101 tgctacaaatttctctgaagcaatatccgagggtattttgcgtgagaatcatgatgatattcctgcactggctgaactaatcacattgggttttgtgatg 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  3013873 tgctacaaatttctctgaagcaatatccgagggtattttgcgtgagaatcatgatgatattcctgcactggccgaactaatcacattgggttttgtgatg 3013972  T
Q  201 aaattcaagaatgaagaaattgattttctaatggaatccaagaatcttcagattgaccttgaggatgaggagtttctca 279  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3013973 aaattcaagaatgaagaaattgattttctaatggaatccaagaatcttcagattgaccttgaggatgaggagtttctca 3014051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 9 - 279
Target Start/End: Complemental strand, 2929001 - 2928731
Alignment:
Q  9 aagaaatcaaacaaaagggtacgttgggaaagtcaaagttgcaagtttatcatccagaagatggatggagttcttggtgattcattgaagtatgctacaa 108  Q
    |||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | ||||| ||||||| ||||||  | ||||||||    
T  2929001 aagaaagcaaacaaaagggtacgttgggaaagtcaaagctgcaagtttatcatccagaagatggaggaagttcctggtgatgcattgagatgtgctacaa 2928902  T
Q  109 atttctctgaagcaatatccgagggtattttgcgtgagaatcatgatgatattcctgcactggctgaactaatcacattgggttttgtgatgaaattcaa 208  Q
     |||||||||||||||||||||||||||||||||||||||||||||| || || |||||||  | |||||||||||| | || |||||  ||||||| ||    
T  2928901 gtttctctgaagcaatatccgagggtattttgcgtgagaatcatgatcatgttgctgcactctcggaactaatcacactaggctttgttctgaaatttaa 2928802  T
Q  209 gaatgaagaaattgattttctaatggaatccaagaatcttcagattgaccttgaggatgaggagtttctca 279  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  2928801 gaatgaagaaattgattttctaatggaatccaagaatcttcagattgaccttgaggatgaggagttcctca 2928731  T

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Target: chr8; HSP #3
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 9 - 279
Target Start/End: Complemental strand, 2945642 - 2945372
Alignment:
Q  9 aagaaatcaaacaaaagggtacgttgggaaagtcaaagttgcaagtttatcatccagaagatggatggagttcttggtgattcattgaagtatgctacaa 108  Q
    |||||| ||||||||||||||||||||||||||||||| || |||||||||||||||||||| || | |||||  |||||||| ||||| ||||||||||    
T  2945642 aagaaagcaaacaaaagggtacgttgggaaagtcaaagctgtaagtttatcatccagaagattgaggaagttcccggtgattctttgaattatgctacaa 2945543  T
Q  109 atttctctgaagcaatatccgagggtattttgcgtgagaatcatgatgatattcctgcactggctgaactaatcacattgggttttgtgatgaaattcaa 208  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||| || ||||||||||||||||||||||||||||||||| |||||||||||||||    
T  2945542 atttctctgaagcaatatccgagggtattttgcctgagaatcatgattatgttcctgcactggctgaactaatcacattgggttatgtgatgaaattcaa 2945443  T
Q  209 gaatgaagaaattgattttctaatggaatccaagaatcttcagattgaccttgaggatgaggagtttctca 279  Q
    ||||||||||||||||||||| |||||||| |||||| | |||||||| | ||  ||||||||||| ||||    
T  2945442 gaatgaagaaattgattttctcatggaatcgaagaatttgcagattgaacatgcagatgaggagttcctca 2945372  T

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Target: chr8; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 94 - 279
Target Start/End: Complemental strand, 2919414 - 2919229
Alignment:
Q  94 tgaagtatgctacaaatttctctgaagcaatatccgagggtattttgcgtgagaatcatgatgatattcctgcactggctgaactaatcacattgggttt 193  Q
    |||| ||||| ||| ||||||||||||||||||| || ||| ||||| ||||||||||||||  | ||||||| ||  ||||||| ||||||||||||||    
T  2919414 tgaaatatgccacatatttctctgaagcaatatcagaaggtgttttgtgtgagaatcatgatcttgttcctgctctctctgaactgatcacattgggttt 2919315  T
Q  194 tgtgatgaaattcaagaatgaagaaattgattttctaatggaatccaagaatcttcagattgaccttgaggatgaggagtttctca 279  Q
    | || ||||||||||||||||||| ||||| ||||| ||||| ||||||||| | ||||||  | ||||||||||| |||| ||||    
T  2919314 tatgctgaaattcaagaatgaagatattgaatttctcatggagtccaagaatttacagattttctttgaggatgagaagttcctca 2919229  T

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Target: chr8; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 19 - 241
Target Start/End: Complemental strand, 37794360 - 37794138
Alignment:
Q  19 acaaaagggtacgttgggaaagtcaaagttgcaagtttatcatccagaagatggatggagttcttggtgattcattgaagtatgctacaaatttctctga 118  Q
    |||||| |||||| |||||||| ||||||| ||||||| ||||||||||| ||||||    ||  ||  || || |||| ||||| ||| ||||||||||    
T  37794360 acaaaatggtacgctgggaaaggcaaagttccaagtttttcatccagaagttggatgagcctcggggaaatgcactgaaatatgcgacatatttctctga 37794261  T
Q  119 agcaatatccgagggtattttgcgtgagaatcatgatgatattcctgcactggctgaactaatcacattgggttttgtgatgaaattcaagaatgaagaa 218  Q
    | ||||||| || ||| |||||  |||||||||||||  | ||||||| ||  ||||| | |||||||||||||||||| |||||||||||||||||||     
T  37794260 aacaatatcagaaggtgttttgtctgagaatcatgattttgttcctgccctatctgaattgatcacattgggttttgtgctgaaattcaagaatgaagat 37794161  T
Q  219 attgattttctaatggaatccaa 241  Q
    ||||| ||||| |||||||||||    
T  37794160 attgaatttctgatggaatccaa 37794138  T

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Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 175 - 254
Target Start/End: Complemental strand, 2913250 - 2913170
Alignment:
Q  175 aactaatcacattg-ggttttgtgatgaaattcaagaatgaagaaattgattttctaatggaatccaagaatcttcagatt 254  Q
    |||| ||||||||| ||||||||| ||||| ||||||||||||||| ||| ||||| ||| | ||||||||| | ||||||    
T  2913250 aactgatcacattgaggttttgtgctgaaactcaagaatgaagaaactgaatttctgatgtagtccaagaatttacagatt 2913170  T

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Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 124 - 183
Target Start/End: Complemental strand, 2941880 - 2941821
Alignment:
Q  124 tatccgagggtattttgcgtgagaatcatgatgatattcctgcactggctgaactaatca 183  Q
    |||| |||||| |||||||||||||||||||| || ||||||||||  ||||||| ||||    
T  2941880 tatctgagggtgttttgcgtgagaatcatgatcatgttcctgcactcactgaactgatca 2941821  T

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Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 48
Target Start/End: Complemental strand, 2941980 - 2941948
Alignment:
Q  16 caaacaaaagggtacgttgggaaagtcaaagtt 48  Q
    |||||||||||||||||| ||||||||||||||    
T  2941980 caaacaaaagggtacgtttggaaagtcaaagtt 2941948  T

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Target: chr6 (Bit Score: 135; Significance: 2e-70; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 279
Target Start/End: Original strand, 4917454 - 4917732
Alignment:
Q  1 tcatcaccaagaaatcaaacaaaagggtacgttgggaaagtcaaagttgcaagtttatcatccagaagatggatggagttcttggtgattcattgaagta 100  Q
    |||| ||||||||| | ||||||||||| |||||||| |||||||| ||||||||||| ||||| ||||||||||||| || || |||   |||||| ||    
T  4917454 tcattaccaagaaagccaacaaaagggtgcgttgggagagtcaaagctgcaagtttataatccaaaagatggatggagctcctgatgaaatattgaaata 4917553  T
Q  101 tgctacaaatttctctgaagcaatatccgagggtattttgcgtgagaatcatgatgatattcctgcactggctgaactaatcacattgggttttgtgatg 200  Q
    ||||||| |||| |||||||||||||| |||||| |||||||||||||||| ||| || ||||||||||  |||| |||||||||  ||||||  |  ||    
T  4917554 tgctacatatttttctgaagcaatatctgagggtgttttgcgtgagaatcacgatcatgttcctgcactcactgatctaatcacaacgggtttctttctg 4917653  T
Q  201 aaattcaagaatgaagaaattgattttctaatggaatccaagaatcttcagattgaccttgaggatgaggagtttctca 279  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| | ||| ||||||||||||||||    
T  4917654 aaatttaagaatgaagaaattgattttctaatggaatccaagaatctgcagattgagcatgaagatgaggagtttctca 4917732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 132; Significance: 1e-68; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 9 - 279
Target Start/End: Original strand, 1508114 - 1508378
Alignment:
Q  9 aagaaatcaaacaaaagggtacgttgggaaagtcaaagttgcaagtttatcatccagaagatggatggagttcttggtgattcattgaagtatgctacaa 108  Q
    |||||| ||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||      ||  ||||||||||| |||| |||||    
T  1508114 aagaaagcaaacaaaagggtgcgttgggaaagtcaaagttccaagtttatcatccagaagatggatgg------tgaggattcattgaaatatgttacaa 1508207  T
Q  109 atttctctgaagcaatatccgagggtattttgcgtgagaatcatgatgatattcctgcactggctgaactaatcacattgggttttgtgatgaaattcaa 208  Q
    ||||||||||||||||||| |||||| |||||| ||| ||||||||| || ||||||||||  || ||||||||||||| || ||| |  ||||||||||    
T  1508208 atttctctgaagcaatatctgagggtgttttgcatgaaaatcatgatcatgttcctgcactatctaaactaatcacattagggttttttctgaaattcaa 1508307  T
Q  209 gaatgaagaaattgattttctaatggaatccaagaatcttcagattgaccttgaggatgaggagtttctca 279  Q
    ||||||||||||||||||||| |||||||||||| ||||  |||| |||| |||||||||| |||| ||||    
T  1508308 gaatgaagaaattgattttcttatggaatccaagtatctggagatcgaccctgaggatgagaagttcctca 1508378  T

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Target: chr2 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 19 - 241
Target Start/End: Complemental strand, 28023373 - 28023151
Alignment:
Q  19 acaaaagggtacgttgggaaagtcaaagttgcaagtttatcatccagaagatggatggagttcttggtgattcattgaagtatgctacaaatttctctga 118  Q
    |||||| ||| || |||||||| ||||||| ||||||| ||||||||||| ||||||    ||   |  || || |||| ||||| ||| || |||||||    
T  28023373 acaaaatggttcgctgggaaaggcaaagttccaagtttttcatccagaagttggatgagcctcagagaaatgcactgaaatatgccacatatgtctctga 28023274  T
Q  119 agcaatatccgagggtattttgcgtgagaatcatgatgatattcctgcactggctgaactaatcacattgggttttgtgatgaaattcaagaatgaagaa 218  Q
    | ||||||| || ||| |||||  ||||||||| |||  | ||||||| ||  ||||| | |||||||||||||||||| |||||||||||||||||||     
T  28023273 aacaatatcagaaggtgttttgtctgagaatcacgattttgttcctgccctctctgaattgatcacattgggttttgtgctgaaattcaagaatgaagat 28023174  T
Q  219 attgattttctaatggaatccaa 241  Q
    ||||| || || |||||||||||    
T  28023173 attgaattcctgatggaatccaa 28023151  T

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