View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18743_low_40 (Length: 258)
Name: NF18743_low_40
Description: NF18743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18743_low_40 |
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| [»] chr1 (4 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 200; Significance: 1e-109; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 17 - 258
Target Start/End: Original strand, 7035419 - 7035649
Alignment:
| Q |
17 |
aaaaagcacaaaaatagtgtatcaaaagccaacatagtgaccatccattcataaatatcactgtagtataacatctttgacaaactcaccaaaacacatt |
116 |
Q |
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| T |
7035419 |
aaaaagcacaaaaatagtgtatcaaaagccaacatagtgaccatccattcataaatatcactgtagtataacatctttgacaaactcaccaaaacacatt |
7035518 |
T |
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| Q |
117 |
aactaagttcaactcactatagggaaaagaataataatacattgatttcgtttgaagcatgccagtaaaaaacatgtgttaaaaacattgattataagta |
216 |
Q |
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| T |
7035519 |
aaccaagttcaactcactatagggaaaagaataataatacattgatttcgtttgaagcatgccagtaaaaaacatgtgttaaaaacatt----------- |
7035607 |
T |
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| Q |
217 |
gcttgacatatcaaagaattttcccctcaacaaaggtagaat |
258 |
Q |
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| T |
7035608 |
gcttgacatatcaaagaattttcccctcaacaaaggtagaat |
7035649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 17 - 258
Target Start/End: Original strand, 7896652 - 7896893
Alignment:
| Q |
17 |
aaaaagcacaaaaatagtgtatcaaaagccaacatagtgaccatccattcataaatatcactgtagtataacatctttgacaaactcaccaaaacacatt |
116 |
Q |
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||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| |
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| T |
7896652 |
aaaaagcacaaaagtagtgtatcaaaaggcaacatagtgaccatccattcataaatatcactgtagtataacatctttgacaaactcacaaagacacatt |
7896751 |
T |
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| Q |
117 |
aactaagttcaactcactatagggaaaagaataataatacattgatttc--------gtttgaagc-------atgccagtaaaaaacatgtgttaaaaa |
201 |
Q |
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| T |
7896752 |
aactaagttcaactcaatatagggaaaagaataataatacagtgatttcgtgattttgtttgaagcatgcatgatgccagtaaaaaacatgtgttaaaaa |
7896851 |
T |
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| Q |
202 |
cattgattataagtagcttgacatatcaaagaattttcccctcaacaaaggtagaat |
258 |
Q |
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| T |
7896852 |
ca---------------ttgacatatcaaagaattttcccctcaacaaaggtagaat |
7896893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 130 - 255
Target Start/End: Original strand, 7039080 - 7039203
Alignment:
| Q |
130 |
tcactatagggaaaagaataataatacattgatttcgtttgaagcatgccagtaaaaaacatgtgttaaaaacattgattataagtagcttgacatatca |
229 |
Q |
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| T |
7039080 |
tcactttagggaaaagaataatactagaaagatgtcatttgaagcagggcagtaaaa--catgtgtgaaaaacattgaatatgagtggcttgacatttca |
7039177 |
T |
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| Q |
230 |
aagaattttcccctcaacaaaggtag |
255 |
Q |
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| T |
7039178 |
aagaattttcccctcaacaagggtag |
7039203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 89 - 207
Target Start/End: Original strand, 7880819 - 7880935
Alignment:
| Q |
89 |
atctttgacaaactcaccaaaacacattaactaagttcaactcactatagggaaaagaataataatacattgatttcgtttgaagcatgccagtaaaaaa |
188 |
Q |
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||||||||||| ||| |||| ||||||| || |||| |||||||| ||||||||||||||||| || | ||| || ||||||||| | |||| |||| |
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| T |
7880819 |
atctttgacaacctcgccaagacacatttacaaagtctaactcactttagggaaaagaataatactagaaagatgtcatttgaagcagggcagt--aaaa |
7880916 |
T |
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| Q |
189 |
catgtgttaaaaacattga |
207 |
Q |
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| T |
7880917 |
catgtgtgaaaaacattga |
7880935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 49 - 152
Target Start/End: Original strand, 29379045 - 29379148
Alignment:
| Q |
49 |
catagtgaccatccattcataaatatcactgtagtataacatctttgacaaactcaccaaaacacattaactaagttcaactcactatagggaaaagaat |
148 |
Q |
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| T |
29379045 |
catagtaaccatccactcataaatttttctgtagtatcacatccttgacagcctcaccaagacacatttataaagtataactcactttaggtaaaagaat |
29379144 |
T |
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| Q |
149 |
aata |
152 |
Q |
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|||| |
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| T |
29379145 |
aata |
29379148 |
T |
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