View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18743_low_42 (Length: 250)
Name: NF18743_low_42
Description: NF18743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18743_low_42 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 203; Significance: 1e-111; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 14 - 232
Target Start/End: Complemental strand, 52714484 - 52714266
Alignment:
| Q |
14 |
catcaaataaactaagaaattgacagcattgagaatcgtcaatatccagaagaaccaatccaacttgctttcattaagattattccttagccaccctttc |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52714484 |
catcaaataaactaagaaattgacagcattgagaatcgtcaatatccagaagaaccaatccaacttgctttcattaagattattccttagccaccctttc |
52714385 |
T |
|
| Q |
114 |
tcctgtcctccagttgcagctacaataatcttcaccagagcagtacttaaccaacttccaattccaatctcagacaaaaacattgcactactaatacttt |
213 |
Q |
| |
|
|| ||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
52714384 |
tcttgtcctccagttgcatctacaataatcttcaccaaagcagtacttaaccaacttccaattccaatcttagacaaaaacattgcactactaatacttt |
52714285 |
T |
|
| Q |
214 |
ttgtcccatccgttgcctc |
232 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
52714284 |
ttgtcccatccgttgcctc |
52714266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 14 - 232
Target Start/End: Complemental strand, 52723506 - 52723288
Alignment:
| Q |
14 |
catcaaataaactaagaaattgacagcattgagaatcgtcaatatccagaagaaccaatccaacttgctttcattaagattattccttagccaccctttc |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52723506 |
catcaaataaactaagaaattgacagcattgagaatcgtcaatatccagaagaaccaatccaacttgctttcattaagattattccttagccaccctttc |
52723407 |
T |
|
| Q |
114 |
tcctgtcctccagttgcagctacaataatcttcaccagagcagtacttaaccaacttccaattccaatctcagacaaaaacattgcactactaatacttt |
213 |
Q |
| |
|
|| ||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
52723406 |
tcttgtcctccagttgcatctacaataatcttcaccaaagcagtacttaaccaacttccaattccaatcagagacaaaaacattgcactactaatacttt |
52723307 |
T |
|
| Q |
214 |
ttgtcccatccgttgcctc |
232 |
Q |
| |
|
|||||||||| |||||||| |
|
|
| T |
52723306 |
ttgtcccatctgttgcctc |
52723288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 17 - 232
Target Start/End: Complemental strand, 52700207 - 52699989
Alignment:
| Q |
17 |
caaataaactaagaaattgacagcattgagaatcgtcaatatccagaagaaccaatccaacttgctttcattaagattattc---cttagccaccctttc |
113 |
Q |
| |
|
||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| ||| |||| ||||||||| |
|
|
| T |
52700207 |
caaataaaccaagaaattgacagcattgagaactgtcaatatccagaagaaccaatccaacctgctttcattaagatccttccttcttaaccacccttta |
52700108 |
T |
|
| Q |
114 |
tcctgtcctccagttgcagctacaataatcttcaccagagcagtacttaaccaacttccaattccaatctcagacaaaaacattgcactactaatacttt |
213 |
Q |
| |
|
|| |||||||| || | ||| || | ||||||||| |||| |||| ||||||||||| ||||||| |||||||||||||| ||||||||||||||||| |
|
|
| T |
52700107 |
tcttgtcctccggtcgtagcggtaacagtcttcaccaaagcactactcaaccaacttccgattccaacctcagacaaaaacactgcactactaatacttt |
52700008 |
T |
|
| Q |
214 |
ttgtcccatccgttgcctc |
232 |
Q |
| |
|
||||||| ||||| ||||| |
|
|
| T |
52700007 |
ttgtcccgtccgtcgcctc |
52699989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University