View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18743_low_45 (Length: 247)
Name: NF18743_low_45
Description: NF18743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18743_low_45 |
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Alignment Details
Target: chr7 (Bit Score: 112; Significance: 1e-56; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 16 - 175
Target Start/End: Complemental strand, 15639340 - 15639181
Alignment:
| Q |
16 |
atgaggtgactaatagaatatataagaggccggtaaggatcaagagaaaagacgagtgagccgacttgaaattttgtcattataaacacaaagaatacct |
115 |
Q |
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| T |
15639340 |
atgaggtgactaatagaatatttaagaggccggtaaggataaagagaaaagacgagtgagctaacttgatattttgtcattataaacacaaagaatacct |
15639241 |
T |
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| Q |
116 |
tttgaatttccannnnnnnnatcttcaaaaaagattggaatcataggattgagctctaat |
175 |
Q |
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| T |
15639240 |
tttggatttccattttttttatcttcaaaaaagattggaatcataggattgagctctaat |
15639181 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 104; Significance: 6e-52; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 18 - 165
Target Start/End: Complemental strand, 26614644 - 26614497
Alignment:
| Q |
18 |
gaggtgactaatagaatatataagaggccggtaaggatcaagagaaaagacgagtgagccgacttgaaattttgtcattataaacacaaagaataccttt |
117 |
Q |
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| T |
26614644 |
gaggtgaataatagaatattcaagaggccggtaaggatcaagagaaaagacgagtgagccgacttgaaattttggcattataaacacaaagaataccttt |
26614545 |
T |
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| Q |
118 |
tgaatttccannnnnnnnatcttcaaaaaagattggaatcataggatt |
165 |
Q |
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| T |
26614544 |
tggatttccattttttttatcttcaaaaaagattggaatcataggatt |
26614497 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 93; Significance: 2e-45; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 16 - 165
Target Start/End: Original strand, 18336724 - 18336877
Alignment:
| Q |
16 |
atgaggtgactaatagaatatataagaggccggtaaggatcaagagaaaagacgagtgagccgacttgaaattttgtcattat----aaacacaaagaat |
111 |
Q |
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| T |
18336724 |
atgaggtgaataatagaatattcaagaggccggtaaggatcaagagaaaagacgagtgagccgacttgaaattttggcattataaacaaacacaaagaat |
18336823 |
T |
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| Q |
112 |
accttttgaatttccannnnnnnnatcttcaaaaaagattggaatcataggatt |
165 |
Q |
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| T |
18336824 |
accttttggatttccattttttttatcttcaaaaaagattggaatcataggatt |
18336877 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 64 - 113
Target Start/End: Complemental strand, 39973754 - 39973705
Alignment:
| Q |
64 |
aagacgagtgagccgacttgaaattttgtcattataaacacaaagaatac |
113 |
Q |
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| T |
39973754 |
aagacgagtgagccgacttgaaattttggcattataaacccaaagaatac |
39973705 |
T |
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Target: chr1 (Bit Score: 75; Significance: 1e-34; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 19 - 165
Target Start/End: Complemental strand, 13090474 - 13090329
Alignment:
| Q |
19 |
aggtgactaatagaatatataagaggccggtaaggatcaagagaaaagacgagtgagccgacttgaaatttt-gtcattataaacacaaagaataccttt |
117 |
Q |
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|||||| ||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||| | ||||||||||||||| ||||||||| |
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| T |
13090474 |
aggtgaataatagaatattcaagaggccggtaaggatcaagagaaaagacgagcgagccgacttgaaattttgggcattataaacacaaataataccttt |
13090375 |
T |
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| Q |
118 |
tgaatttccannnnnnnnatcttcaaaaaagattggaatcataggatt |
165 |
Q |
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| T |
13090374 |
tggatttcca--ttttttatttacaaaaaagattggaatcataggatt |
13090329 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 16 - 107
Target Start/End: Original strand, 13185362 - 13185453
Alignment:
| Q |
16 |
atgaggtgactaatagaatatataagaggccggtaaggatcaagagaaaagacgagtgagccgacttgaaattttgtcattataaacacaaa |
107 |
Q |
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| T |
13185362 |
atgaggtgaataatagaatattcaagaggccggtaaggatcaagataaaagacgagcgagccgacttgaaattttggcattataaacacaaa |
13185453 |
T |
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