View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18743_low_47 (Length: 242)

Name: NF18743_low_47
Description: NF18743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18743_low_47
NF18743_low_47
[»] scaffold0294 (1 HSPs)
scaffold0294 (16-242)||(7999-8231)
[»] chr6 (29 HSPs)
chr6 (16-178)||(5384129-5384291)
chr6 (27-228)||(5438960-5439170)
chr6 (16-225)||(5100957-5101175)
chr6 (16-242)||(5448547-5448782)
chr6 (16-242)||(5136041-5136276)
chr6 (16-139)||(5353097-5353220)
chr6 (16-142)||(5156244-5156370)
chr6 (15-228)||(5397983-5398205)
chr6 (170-236)||(5180902-5180968)
chr6 (170-228)||(5351501-5351559)
chr6 (38-139)||(5334139-5334240)
chr6 (38-142)||(5283443-5283547)
chr6 (38-229)||(5372057-5372257)
chr6 (170-228)||(5098312-5098370)
chr6 (170-228)||(5156149-5156207)
chr6 (170-228)||(5334279-5334337)
chr6 (16-225)||(23127449-23127667)
chr6 (38-91)||(5181056-5181109)
chr6 (180-225)||(5242651-5242696)
chr6 (38-110)||(5177696-5177768)
chr6 (38-142)||(5256381-5256485)
chr6 (38-110)||(5279521-5279593)
chr6 (38-110)||(5689169-5689241)
chr6 (16-110)||(5242778-5242872)
chr6 (148-225)||(5126768-5126845)
chr6 (179-228)||(5283357-5283406)
chr6 (98-142)||(2938929-2938973)
chr6 (165-225)||(5353002-5353062)
chr6 (180-228)||(5427011-5427059)
[»] chr3 (4 HSPs)
chr3 (29-142)||(47985624-47985737)
chr3 (29-142)||(47994911-47995024)
chr3 (29-142)||(48004198-48004311)
chr3 (29-142)||(48013483-48013596)
[»] chr7 (1 HSPs)
chr7 (16-225)||(36213060-36213278)
[»] chr5 (1 HSPs)
chr5 (38-142)||(8879489-8879593)
[»] chr4 (3 HSPs)
chr4 (153-225)||(4319441-4319513)
chr4 (164-225)||(4346458-4346519)
chr4 (74-142)||(4319533-4319601)
[»] chr2 (1 HSPs)
chr2 (38-93)||(22583570-22583625)


Alignment Details
Target: scaffold0294 (Bit Score: 174; Significance: 1e-93; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 16 - 242
Target Start/End: Complemental strand, 8231 - 7999
Alignment:
Q  16 tggtggttgtgttctcccgggcgatagttatccaaattggttaagcttcaattgtgacggttcttctgtaatttttaaggcccctcaagtggaagagcat 115  Q
    ||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||    
T  8231 tggtggttgtgttctcccgggtgatagttatccaaactggttaagcttcaattgtgatggttcttctgtaatttttaatgcccctcaagtggaagagcat 8132  T
Q  116 aacttaaagtcaatgatgtgcattgtc------actgcggataacataacaccggatggtcttaaaaatgtgttagtgaataattacacaaaggccacca 209  Q
    |||||||||||| |||||||||||| |      |||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||    
T  8131 aacttaaagtcattgatgtgcattgcctcttcaactgcggataacataacaccagatggtcttaaaaatgtgttagtgaaaaattacacaaaggccacca 8032  T
Q  210 ttcagatctataagagtgaaacgttagcttcct 242  Q
    |||||||||||||||||||||| ||||||||||    
T  8031 ttcagatctataagagtgaaacattagcttcct 7999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 139; Significance: 7e-73; HSPs: 29)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 16 - 178
Target Start/End: Original strand, 5384129 - 5384291
Alignment:
Q  16 tggtggttgtgttctcccgggcgatagttatccaaattggttaagcttcaattgtgacggttcttctgtaatttttaaggcccctcaagtggaagagcat 115  Q
    |||||||||||||||||| || |||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  5384129 tggtggttgtgttctcccaggtgatagttatccaaactggttaagcttcaaatgtgacggttcttctgtaatttttaaggcccctcaagtggaagagcat 5384228  T
Q  116 aacttaaagtcaatgatgtgcattgtcactgcggataacataacaccggatggtcttaaaaat 178  Q
    |||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||    
T  5384229 aacttaaagtcattgatgtgcattgccactgcggataacataacaccggatggtcttaaaaat 5384291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 27 - 228
Target Start/End: Original strand, 5438960 - 5439170
Alignment:
Q  27 ttctcccgggcgatagttatccaaattggttaagcttcaattgtgacggttcttctgtaatttttaaggcccctcaagtggaagagcataacttaaagtc 126  Q
    ||||||| || |||||||||||||||||||||| ||| |||| ||| ||||||||||||| |||| | | |||||||||||||| || ||| || | |||    
T  5438960 ttctccccggtgatagttatccaaattggttaacctttaattctgaaggttcttctgtaacttttcaagtccctcaagtggaagggcgtaatttgatgtc 5439059  T
Q  127 aatgatgtgcattgtc---------actgcggataacataacaccggatggtcttaaaaatgtgttagtgaataattacacaaaggccaccattcagatc 217  Q
    | ||||||||||||||         ||| |||||||||||||| | ||| | |||| |||||| || ||||  ||| |||||||||||||||||||| ||    
T  5439060 attgatgtgcattgtctattcttcaactccggataacataacatcagatagccttataaatgtattggtgataaatcacacaaaggccaccattcagctc 5439159  T
Q  218 tataagagtga 228  Q
    |||||||||||    
T  5439160 tataagagtga 5439170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 16 - 225
Target Start/End: Complemental strand, 5101175 - 5100957
Alignment:
Q  16 tggtggttgtgttctcccgggcgatagttatccaaattggttaagcttcaattgtgacggttcttctgtaatttttaaggcccctcaagtggaagagcat 115  Q
    |||||||||| | || || || |||||||||||||||||||||| |||   ||  || ||||||||||||| |||  | | |||||||||||||| || |    
T  5101175 tggtggttgtttgcttcctggtgatagttatccaaattggttaacctttctttcggaaggttcttctgtaactttagaagtccctcaagtggaagggcgt 5101076  T
Q  116 aacttaaagtcaatgatgtgcattgtc---------actgcggataacataacaccggatggtcttaaaaatgtgttagtgaataattacacaaaggcca 206  Q
    ||||| ||| |||||||||||||||||         ||  | |||||||||||| |   ||| |||||||||||||||||||| ||||||||||||||||    
T  5101075 aacttgaagacaatgatgtgcattgtctatacttcaaccccagataacataacatcaagtggccttaaaaatgtgttagtgaaaaattacacaaaggcca 5100976  T
Q  207 ccattcagatctataagag 225  Q
    |||||||| ||||||||||    
T  5100975 ccattcagctctataagag 5100957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 16 - 242
Target Start/End: Original strand, 5448547 - 5448782
Alignment:
Q  16 tggtggttgtgttctcccgggcgatagttatccaaattggttaagcttcaattgtgacggttcttctgtaatttttaaggcccctcaagtggaagagcat 115  Q
    |||||||||| | || || || |||||||||||| ||||||||| ||| |||| ||| ||||||||||||| |||| | | ||||||||||||||||| |    
T  5448547 tggtggttgtttccttcccggtgatagttatccagattggttaacctttaattctgaaggttcttctgtaacttttgaagtccctcaagtggaagagcgt 5448646  T
Q  116 aacttaaagtcaatgatgtgcattgtc---------actgcggataacataacaccggatggtcttaaaaatgtgttagtgaataattacacaaaggcca 206  Q
     | || | |||| ||||||||||||||         ||  | |||||  ||||| |   ||| |||||||||||||| ||||| |||||||||||||| |    
T  5448647 caattgacgtcattgatgtgcattgtctatacttcaaccccagataatgtaacatctagtggccttaaaaatgtgttggtgaaaaattacacaaaggcta 5448746  T
Q  207 ccattcagatctataagagtgaaacgttagcttcct 242  Q
    ||||||| |||||||||||||| || |||| |||||    
T  5448747 ccattcaaatctataagagtgagacattagtttcct 5448782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 16 - 242
Target Start/End: Complemental strand, 5136276 - 5136041
Alignment:
Q  16 tggtggttgtgttctcccgggcgatagttatccaaattggttaagcttcaattgtgacggttcttctgtaatttttaaggcccctcaagtggaagagcat 115  Q
    |||||||||| | || || || |||||||||||||||||||||| |||   ||  || ||||||||||||| |||  | | |||||||||||||| || |    
T  5136276 tggtggttgtttgcttcctggtgatagttatccaaattggttaacctttctttcggaaggttcttctgtaactttagaagtccctcaagtggaagggcgt 5136177  T
Q  116 aacttaaagtcaatgatgtgcattgtc---------actgcggataacataacaccggatggtcttaaaaatgtgttagtgaataattacacaaaggcca 206  Q
    ||||| ||| |||||||||||||||||         ||  | |||||||||||| |   ||| |||||||||||||| || || ||||||||||||||||    
T  5136176 aacttgaagacaatgatgtgcattgtctatacttcaaccccagataacataacatcaagtggccttaaaaatgtgttggtaaaaaattacacaaaggcca 5136077  T
Q  207 ccattcagatctataagagtgaaacgttagcttcct 242  Q
    |||||||| |||| ||||| ||| | ||||| ||||    
T  5136076 ccattcagctctacaagagcgaagcattagcctcct 5136041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 16 - 139
Target Start/End: Complemental strand, 5353220 - 5353097
Alignment:
Q  16 tggtggttgtgttctcccgggcgatagttatccaaattggttaagcttcaattgtgacggttcttctgtaatttttaaggcccctcaagtggaagagcat 115  Q
    |||||||||| | ||||| || |||||||||||||||||||||| |||| | | ||| ||||||||||||| |||| | | |||||  ||||||| || |    
T  5353220 tggtggttgtttcctccctggtgatagttatccaaattggttaaccttctactctgaaggttcttctgtaacttttcatgtccctctggtggaagggcgt 5353121  T
Q  116 aacttaaagtcaatgatgtgcatt 139  Q
    ||||| ||| ||||||||||||||    
T  5353120 aacttgaagacaatgatgtgcatt 5353097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 16 - 142
Target Start/End: Complemental strand, 5156370 - 5156244
Alignment:
Q  16 tggtggttgtgttctcccgggcgatagttatccaaattggttaagcttcaattgtgacggttcttctgtaatttttaaggcccctcaagtggaagagcat 115  Q
    |||||||||| | |||||  | |||||||||||||||||||||| ||  |||| ||| ||||||||||| |  ||| | |  ||||||||||||| || |    
T  5156370 tggtggttgtttcctccccagtgatagttatccaaattggttaacctataattctgaaggttcttctgtgaaatttgaagttcctcaagtggaagggcgt 5156271  T
Q  116 aacttaaagtcaatgatgtgcattgtc 142  Q
    ||||| ||| |||||||||||||||||    
T  5156270 aacttgaagacaatgatgtgcattgtc 5156244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 15 - 228
Target Start/End: Original strand, 5397983 - 5398205
Alignment:
Q  15 atggtggttgtgttctcccgggcgatagttatccaaattggttaagcttcaattgtgacggttcttctgtaatttttaaggcccctcaagtggaagagca 114  Q
    ||||||||||| | |||||  ||||||||||||||||||||||||  |  | || ||| ||||||||| ||| |||| | |  ||||| ||||||| ||     
T  5397983 atggtggttgtttcctccccagcgatagttatccaaattggttaacttatagttctgagggttcttctttaacttttgaagttcctcatgtggaagggcg 5398082  T
Q  115 taacttaaagtcaatgatgtgcattgt---------cactgcggataacataacaccggatggtcttaaaaatgtgttagtgaataattacacaaaggcc 205  Q
    |||||| ||| ||||||||||||||||          |||  ||||||  ||||| |   ||| ||||||||  |||||||||  |||||||||||||||    
T  5398083 taacttgaagacaatgatgtgcattgtgtatacttcaactctggataatgtaacatctagtggccttaaaaacatgttagtgataaattacacaaaggcc 5398182  T
Q  206 accattcagatctataagagtga 228  Q
    ||||||||| |||||||||||||    
T  5398183 accattcagctctataagagtga 5398205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 170 - 236
Target Start/End: Complemental strand, 5180968 - 5180902
Alignment:
Q  170 cttaaaaatgtgttagtgaataattacacaaaggccaccattcagatctataagagtgaaacgttag 236  Q
    ||||||||  ||||||| || |||||||||||||| ||||||||| ||||||||||||| |||||||    
T  5180968 cttaaaaacatgttagttaaaaattacacaaaggctaccattcagctctataagagtgatacgttag 5180902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 170 - 228
Target Start/End: Original strand, 5351501 - 5351559
Alignment:
Q  170 cttaaaaatgtgttagtgaataattacacaaaggccaccattcagatctataagagtga 228  Q
    ||||||||  |||||||||| |||||||||||||||||||||| | |||||||||||||    
T  5351501 cttaaaaacatgttagtgaaaaattacacaaaggccaccattcggctctataagagtga 5351559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 38 - 139
Target Start/End: Original strand, 5334139 - 5334240
Alignment:
Q  38 gatagttatccaaattggttaagcttcaattgtgacggttcttctgtaatttttaaggcccctcaagtggaagagcataacttaaagtcaatgatgtgca 137  Q
    |||||||||||||||||||||||||  |||| ||| ||||||||||| |  ||| | |  ||||||||||||| |  |||||| ||| ||||||||||||    
T  5334139 gatagttatccaaattggttaagctataattctgaaggttcttctgtgaaatttgaagttcctcaagtggaagggggtaacttgaagacaatgatgtgca 5334238  T
Q  138 tt 139  Q
    ||    
T  5334239 tt 5334240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 38 - 142
Target Start/End: Complemental strand, 5283547 - 5283443
Alignment:
Q  38 gatagttatccaaattggttaagcttcaattgtgacggttcttctgtaatttttaaggcccctcaagtggaagagcataacttaaagtcaatgatgtgca 137  Q
    |||||||||||| ||||||| | ||| | ||  || ||||||||||||| |||| | | ||||||||| |||| |  |||||| ||||||||||||||||    
T  5283547 gatagttatccagattggttgacctttagttcagaaggttcttctgtaacttttgatgtccctcaagttgaagggtgtaacttgaagtcaatgatgtgca 5283448  T
Q  138 ttgtc 142  Q
    |||||    
T  5283447 ttgtc 5283443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 38 - 229
Target Start/End: Original strand, 5372057 - 5372257
Alignment:
Q  38 gatagttatccaaattggttaagcttcaattgtgacggttcttctgtaatttttaaggcccctcaagtggaagagcataacttaaagtcaatgatgtgca 137  Q
    |||||||||||||||||||||| ||  | || ||| ||||||||||| |  ||| | |  ||||||||||||| || |||||| ||| |||| |||||||    
T  5372057 gatagttatccaaattggttaacctatagttctgaaggttcttctgtgaaatttgaagttcctcaagtggaagggcgtaacttgaagacaattatgtgca 5372156  T
Q  138 ttgtc---------actgcggataacataacaccggatggtcttaaaaatgtgttagtgaataattacacaaaggccaccattcagatctataagagtga 228  Q
     ||||         ||| |||||||  ||||| |   ||| ||||||||  ||||| |||| |||||||||||||||||||||||| | |||||||||||    
T  5372157 atgtctgtacttcaactccggataatgtaacatctagtggccttaaaaacatgttattgaaaaattacacaaaggccaccattcagctttataagagtga 5372256  T
Q  229 a 229  Q
    |    
T  5372257 a 5372257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 170 - 228
Target Start/End: Original strand, 5098312 - 5098370
Alignment:
Q  170 cttaaaaatgtgttagtgaataattacacaaaggccaccattcagatctataagagtga 228  Q
    ||||||||  |||||||||| ||  |||||||||||||||||||| |||||||||||||    
T  5098312 cttaaaaacatgttagtgaaaaaccacacaaaggccaccattcagctctataagagtga 5098370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 170 - 228
Target Start/End: Complemental strand, 5156207 - 5156149
Alignment:
Q  170 cttaaaaatgtgttagtgaataattacacaaaggccaccattcagatctataagagtga 228  Q
    ||||||||  ||||| |||| |||||||||||||||||||||||| | |||||||||||    
T  5156207 cttaaaaacatgttattgaaaaattacacaaaggccaccattcagctttataagagtga 5156149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 170 - 228
Target Start/End: Original strand, 5334279 - 5334337
Alignment:
Q  170 cttaaaaatgtgttagtgaataattacacaaaggccaccattcagatctataagagtga 228  Q
    ||||||||  |||||||||  |||||||||||||||||||||||  |||||||||||||    
T  5334279 cttaaaaacatgttagtgataaattacacaaaggccaccattcaactctataagagtga 5334337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 16 - 225
Target Start/End: Complemental strand, 23127667 - 23127449
Alignment:
Q  16 tggtggttgtgttctcccgggcgatagttatccaaattggttaagcttcaattgtgacggttcttctgtaatttttaaggcccctcaagtggaagagcat 115  Q
    |||||||||| ||||| | |  |||||||||||| | |||||| | |||  || ||| ||||||||||||| |||| | || ||||||||||||| ||||    
T  23127667 tggtggttgttttctcactgaagatagttatccagactggttaggtttcggttttgaaggttcttctgtaagttttgaagctcctcaagtggaagggcat 23127568  T
Q  116 aacttaaagtcaatgatgtgcattgtcactgcg---------gataacataacaccggatggtcttaaaaatgtgttagtgaataattacacaaaggcca 206  Q
    ||| | ||| |||| |||||  |||||| | |          |||||||| ||  |||||||  ||||||| ||||| || || |||||||||||||  |    
T  23127567 aacgtgaagacaataatgtgtgttgtcaatacttcaaccccagataacattacctcggatggcgttaaaaacgtgttggtaaaaaattacacaaagggta 23127468  T
Q  207 ccattcagatctataagag 225  Q
    |||||||||||||||||||    
T  23127467 ccattcagatctataagag 23127449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 38 - 91
Target Start/End: Complemental strand, 5181109 - 5181056
Alignment:
Q  38 gatagttatccaaattggttaagcttcaattgtgacggttcttctgtaattttt 91  Q
    |||||||||||||||||||||| ||| |||| ||| ||||||||||||| ||||    
T  5181109 gatagttatccaaattggttaacctttaattctgaaggttcttctgtaactttt 5181056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 180 - 225
Target Start/End: Complemental strand, 5242696 - 5242651
Alignment:
Q  180 tgttagtgaataattacacaaaggccaccattcagatctataagag 225  Q
    |||||||||| |||||||||||||||||||||||| |||| |||||    
T  5242696 tgttagtgaaaaattacacaaaggccaccattcagctctacaagag 5242651  T

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Target: chr6; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 38 - 110
Target Start/End: Original strand, 5177696 - 5177768
Alignment:
Q  38 gatagttatccaaattggttaagcttcaattgtgacggttcttctgtaatttttaaggcccctcaagtggaag 110  Q
    ||||||| |||| ||||||||| ||||||||| || |||||||| ||||| ||| | | ||||||||||||||    
T  5177696 gatagttgtccagattggttaaccttcaattgcgaaggttcttcggtaatgtttgaagtccctcaagtggaag 5177768  T

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Target: chr6; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 38 - 142
Target Start/End: Complemental strand, 5256485 - 5256381
Alignment:
Q  38 gatagttatccaaattggttaagcttcaattgtgacggttcttctgtaatttttaaggcccctcaagtggaagagcataacttaaagtcaatgatgtgca 137  Q
    |||||| ||||||||||||||| ||  | || ||| ||||||||||||| |||| | | |||  |||| |||| || |||||| | ||||||||||||||    
T  5256485 gatagtcatccaaattggttaacctatagttctgaaggttcttctgtaacttttgaagtccccgaagttgaagggcgtaacttgatgtcaatgatgtgca 5256386  T
Q  138 ttgtc 142  Q
    |||||    
T  5256385 ttgtc 5256381  T

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Target: chr6; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 38 - 110
Target Start/End: Original strand, 5279521 - 5279593
Alignment:
Q  38 gatagttatccaaattggttaagcttcaattgtgacggttcttctgtaatttttaaggcccctcaagtggaag 110  Q
    ||||||| |||| ||||||||| ||||||||| || |||||||| ||||| ||| | | ||||||||||||||    
T  5279521 gatagttgtccagattggttaaccttcaattgcgaaggttcttcggtaatgtttgaagtccctcaagtggaag 5279593  T

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Target: chr6; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 38 - 110
Target Start/End: Complemental strand, 5689241 - 5689169
Alignment:
Q  38 gatagttatccaaattggttaagcttcaattgtgacggttcttctgtaatttttaaggcccctcaagtggaag 110  Q
    ||||||| |||| ||||||||| ||||||||| || |||||||| ||||| ||| | | ||||||||||||||    
T  5689241 gatagttgtccagattggttaaccttcaattgcgaaggttcttcggtaatgtttgaagtccctcaagtggaag 5689169  T

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Target: chr6; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 110
Target Start/End: Complemental strand, 5242872 - 5242778
Alignment:
Q  16 tggtggttgtgttctcccgggcgatagttatccaaattggttaagcttcaattgtgacggttcttctgtaatttttaaggcccctcaagtggaag 110  Q
    |||||||||| | || || || || ||||||||| ||||||||| |||| ||| ||| ||||||||||| | |||| | | ||||||||||||||    
T  5242872 tggtggttgtttgcttcctggtgacagttatccagattggttaaccttcgattctgaaggttcttctgttacttttgaagtccctcaagtggaag 5242778  T

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Target: chr6; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 148 - 225
Target Start/End: Complemental strand, 5126845 - 5126768
Alignment:
Q  148 ggataacataacaccggatggtcttaaaaatgtgttagtgaataattacacaaaggccaccattcagatctataagag 225  Q
    ||||||||||||| | ||||| |||| ||   |||| ||||| |||||||| ||||||||||||||  ||||||||||    
T  5126845 ggataacataacatcagatggccttacaagcttgttggtgaaaaattacacgaaggccaccattcaactctataagag 5126768  T

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Target: chr6; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 179 - 228
Target Start/End: Complemental strand, 5283406 - 5283357
Alignment:
Q  179 gtgttagtgaataattacacaaaggccaccattcagatctataagagtga 228  Q
    ||||||||||| |||||||||||||||||||| ||  ||||||| |||||    
T  5283406 gtgttagtgaaaaattacacaaaggccaccatccaactctataatagtga 5283357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 142
Target Start/End: Original strand, 2938929 - 2938973
Alignment:
Q  98 cctcaagtggaagagcataacttaaagtcaatgatgtgcattgtc 142  Q
    ||||||||||||| || |||||| ||| |||||||||||||||||    
T  2938929 cctcaagtggaagggcgtaacttgaagacaatgatgtgcattgtc 2938973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 225
Target Start/End: Complemental strand, 5353062 - 5353002
Alignment:
Q  165 atggtcttaaaaatgtgttagtgaataattacacaaaggccaccattcagatctataagag 225  Q
    |||| ||||||||||||||  | || |||||||||||||| ||||||||| | ||||||||    
T  5353062 atggccttaaaaatgtgttgctaaaaaattacacaaaggctaccattcagctttataagag 5353002  T

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Target: chr6; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 228
Target Start/End: Original strand, 5427011 - 5427059
Alignment:
Q  180 tgttagtgaataattacacaaaggccaccattcagatctataagagtga 228  Q
    ||||| |||| |||||||||||||||| ||||||| | |||||||||||    
T  5427011 tgttattgaaaaattacacaaaggccatcattcagctttataagagtga 5427059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 58; Significance: 2e-24; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 29 - 142
Target Start/End: Complemental strand, 47985737 - 47985624
Alignment:
Q  29 ctcccgggcgatagttatccaaattggttaagcttcaattgtgacggttcttctgtaatttttaaggcccctcaagtggaagagcataacttaaagtcaa 128  Q
    ||||| || |||||||||||||||||||||| ||| |||| ||| |||||||| |||| |||| | | |||||||||||||  ||||||||||||| |||    
T  47985737 ctccctggtgatagttatccaaattggttaacctttaattctgaaggttcttcggtaacttttgaagtccctcaagtggaaaggcataacttaaagacaa 47985638  T
Q  129 tgatgtgcattgtc 142  Q
    ||||||||||||||    
T  47985637 tgatgtgcattgtc 47985624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 29 - 142
Target Start/End: Complemental strand, 47995024 - 47994911
Alignment:
Q  29 ctcccgggcgatagttatccaaattggttaagcttcaattgtgacggttcttctgtaatttttaaggcccctcaagtggaagagcataacttaaagtcaa 128  Q
    ||||| || |||||||||||||||||||||| ||| |||| ||| |||||||| |||| |||| | | |||||||||||||  ||||||||||||| |||    
T  47995024 ctccctggtgatagttatccaaattggttaacctttaattctgaaggttcttcggtaacttttgaagtccctcaagtggaaaggcataacttaaagacaa 47994925  T
Q  129 tgatgtgcattgtc 142  Q
    ||||||||||||||    
T  47994924 tgatgtgcattgtc 47994911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 29 - 142
Target Start/End: Complemental strand, 48004311 - 48004198
Alignment:
Q  29 ctcccgggcgatagttatccaaattggttaagcttcaattgtgacggttcttctgtaatttttaaggcccctcaagtggaagagcataacttaaagtcaa 128  Q
    ||||| || |||||||||||||||||||||| ||| |||| ||| |||||||| |||| |||| | | |||||||||||||  ||||||||||||| |||    
T  48004311 ctccctggtgatagttatccaaattggttaacctttaattctgaaggttcttcggtaacttttgaagtccctcaagtggaaaggcataacttaaagacaa 48004212  T
Q  129 tgatgtgcattgtc 142  Q
    ||||||||||||||    
T  48004211 tgatgtgcattgtc 48004198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 29 - 142
Target Start/End: Complemental strand, 48013596 - 48013483
Alignment:
Q  29 ctcccgggcgatagttatccaaattggttaagcttcaattgtgacggttcttctgtaatttttaaggcccctcaagtggaagagcataacttaaagtcaa 128  Q
    ||||| || |||||||||||||||||||||| ||| |||| ||| |||||||| |||| |||| | | |||||||||||||  ||||||||||||| |||    
T  48013596 ctccctggtgatagttatccaaattggttaacctttaattctgaaggttcttcggtaacttttgaagtccctcaagtggaaaggcataacttaaagacaa 48013497  T
Q  129 tgatgtgcattgtc 142  Q
    ||||||||||||||    
T  48013496 tgatgtgcattgtc 48013483  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 16 - 225
Target Start/End: Complemental strand, 36213278 - 36213060
Alignment:
Q  16 tggtggttgtgttctcccgggcgatagttatccaaattggttaagcttcaattgtgacggttcttctgtaatttttaaggcccctcaagtggaagagcat 115  Q
    |||||||||| | ||||| || |||  ||||||  ||||||||| |||||||||  | |||||||||||||||||| | | ||||| |||||| |  | |    
T  36213278 tggtggttgtttgctccctggtgatcattatcctgattggttaaccttcaattgcaaaggttcttctgtaatttttgatgtccctcgagtggatggacgt 36213179  T
Q  116 aacttaaagtcaatgatgtgcattgtc---------actgcggataacataacaccggatggtcttaaaaatgtgttagtgaataattacacaaaggcca 206  Q
    ||||||||| |||| ||||| ||||||         ||| | || |||||| || | ||||| |||||||| ||| | || || ||| |||||||||| |    
T  36213178 aacttaaagacaataatgtgtattgtctattcttcaactccagaaaacatagcatcagatggacttaaaaacgtgatggtaaaaaatcacacaaaggcta 36213079  T
Q  207 ccattcagatctataagag 225  Q
    |||||||||||||||||||    
T  36213078 ccattcagatctataagag 36213060  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 38 - 142
Target Start/End: Original strand, 8879489 - 8879593
Alignment:
Q  38 gatagttatccaaattggttaagcttcaattgtgacggttcttctgtaatttttaaggcccctcaagtggaagagcataacttaaagtcaatgatgtgca 137  Q
    |||| |||||||||||||||||  |||| |||||| ||| ||| ||||| |||||| |  |||||||| |||| |   ||||| ||||| ||||||||||    
T  8879489 gataattatccaaattggttaactttcagttgtgaaggtccttgtgtaacttttaaagttcctcaagttgaagggagaaacttgaagtcgatgatgtgca 8879588  T
Q  138 ttgtc 142  Q
    |||||    
T  8879589 ttgtc 8879593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 153 - 225
Target Start/End: Complemental strand, 4319513 - 4319441
Alignment:
Q  153 acataacaccggatggtcttaaaaatgtgttagtgaataattacacaaaggccaccattcagatctataagag 225  Q
    |||||||| | ||||| ||| |||||||||||||||  ||| |||||||| ||||||||||  ||||||||||    
T  4319513 acataacatcagatggccttgaaaatgtgttagtgataaatcacacaaagaccaccattcaactctataagag 4319441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 164 - 225
Target Start/End: Original strand, 4346458 - 4346519
Alignment:
Q  164 gatggtcttaaaaatgtgttagtgaataattacacaaaggccaccattcagatctataagag 225  Q
    ||||| |||||||||||||| ||||  ||| |||||||| ||||||||||  ||||||||||    
T  4346458 gatggccttaaaaatgtgttggtgataaatcacacaaagaccaccattcaactctataagag 4346519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 142
Target Start/End: Complemental strand, 4319601 - 4319533
Alignment:
Q  74 ggttcttctgtaatttttaaggcccctcaagtggaagagcataacttaaagtcaatgatgtgcattgtc 142  Q
    |||||||||||||||||| | | ||||||||||||||  | || ||| ||| |||| ||||||||||||    
T  4319601 ggttcttctgtaatttttgaagtccctcaagtggaaggacgtagcttgaagacaataatgtgcattgtc 4319533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 38 - 93
Target Start/End: Complemental strand, 22583625 - 22583570
Alignment:
Q  38 gatagttatccaaattggttaagcttcaattgtgacggttcttctgtaatttttaa 93  Q
    |||| ||||||||||||||||| |||||||||  | ||||||||||||| ||||||    
T  22583625 gataattatccaaattggttaaacttcaattgccaaggttcttctgtaacttttaa 22583570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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