View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18743_low_55 (Length: 218)
Name: NF18743_low_55
Description: NF18743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18743_low_55 |
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Alignment Details
Target: chr5 (Bit Score: 178; Significance: 4e-96; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 15 - 196
Target Start/End: Original strand, 11882181 - 11882362
Alignment:
| Q |
15 |
gagaagaaaagcataatgagtgcgaaaagtaaccttagtggcaatgacttgaggaagtctttttcagcgtaacgagccgttaggattccaatgaagagaa |
114 |
Q |
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| T |
11882181 |
gagaagaaaagcataatgagtgcgaaaagtaaccttagtggcaatgacttgaggaagtctttttcagcgtaacgagccgttaggattccaatgaagagaa |
11882280 |
T |
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| Q |
115 |
ggactgaagttgaagaagtgaaaagagatgctgcatctgctataataaacacatcaaatgtgatgtcgtgcaagaacaaggg |
196 |
Q |
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| T |
11882281 |
ggactgaagttgaagaagtgaaaagagatgctgcatctgctataataaacgcatcaaatgtgatgtcgtgcaagaacaaggg |
11882362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 37 - 190
Target Start/End: Complemental strand, 11748363 - 11748210
Alignment:
| Q |
37 |
cgaaaagtaaccttagtggcaatgacttgaggaagtctttttcagcgtaacgagccgttaggattccaatgaagagaaggactgaagttgaagaagtgaa |
136 |
Q |
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| T |
11748363 |
cgaaaagcaacctgagtggtaatgacttgaggaaatccttttcagcataacgcgctgtgagaattccaatgaagagaaggactgaagttgaagaagtgaa |
11748264 |
T |
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| Q |
137 |
aagagatgctgcatctgctataataaacacatcaaatgtgatgtcgtgcaagaa |
190 |
Q |
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| T |
11748263 |
aagagatattgcatctgctattataaacacattaaatgtattgtcatgcaagaa |
11748210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 15 - 196
Target Start/End: Original strand, 11790352 - 11790533
Alignment:
| Q |
15 |
gagaagaaaagcataatgagtgcgaaaagtaaccttagtggcaatgacttgaggaagtctttttcagcgtaacgagccgttaggattccaatgaagagaa |
114 |
Q |
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| T |
11790352 |
gagaaaaaaagcataacgaggccgaagagtaacttaagtggcaaagactttaagaaatccttctctgcataacgcgccgtaaggattccaatgaagagaa |
11790451 |
T |
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| Q |
115 |
ggactgaagttgaagaagtgaaaagagatgctgcatctgctataataaacacatcaaatgtgatgtcgtgcaagaacaaggg |
196 |
Q |
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| T |
11790452 |
ggactgaagttgaagaagtgaaaagagatattgcatctgctattataaacacattaaatgtgtagtcatgtaagaacaaggg |
11790533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 15 - 175
Target Start/End: Original strand, 11834569 - 11834729
Alignment:
| Q |
15 |
gagaagaaaagcataatgagtgcgaaaagtaaccttagtggcaatgacttgaggaagtctttttcagcgtaacgagccgttaggattccaatgaagagaa |
114 |
Q |
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| T |
11834569 |
gagaaaaaaagcataatgagagcgaaaagtaacttaagcggcaaagactttaggaaatccttttctgcataacgtgccgttagaattccaatgaagagga |
11834668 |
T |
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| Q |
115 |
ggactgaagttgaagaagtgaaaagagatgctgcatctgctataataaacacatcaaatgt |
175 |
Q |
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| T |
11834669 |
ggattgaagttgaggaagtgaaaagagatattgcatctgctattataaaaacattaaatgt |
11834729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 54 - 168
Target Start/End: Original strand, 11754250 - 11754364
Alignment:
| Q |
54 |
ggcaatgacttgaggaagtctttttcagcgtaacgagccgttaggattccaatgaagagaaggactgaagttgaagaagtgaaaagagatgctgcatctg |
153 |
Q |
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| T |
11754250 |
ggcaaagactttaggaaatccttttctgcaaaacgcgctgtgagaattccaatgaagagaaggactgaagttgatgaagtgaaaagagatattgcatctg |
11754349 |
T |
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| Q |
154 |
ctataataaacacat |
168 |
Q |
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| T |
11754350 |
ctattataaacacat |
11754364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 15 - 173
Target Start/End: Original strand, 11751111 - 11751269
Alignment:
| Q |
15 |
gagaagaaaagcataatgagtgcgaaaagtaaccttagtggcaatgacttgaggaagtctttttcagcgtaacgagccgttaggattccaatgaagagaa |
114 |
Q |
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||||| |||||||||| ||| |||||||||||| | || |||| ||||| ||||| || ||||| || ||| | || || |||||||||||||||| |
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| T |
11751111 |
gagaaaaaaagcataacgagggcgaaaagtaacttaagaggcacggactttaggaaatcattttcggcaaaactccctgtgagaattccaatgaagagaa |
11751210 |
T |
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| Q |
115 |
ggactgaagttgaagaagtgaaaagagatgctgcatctgctataataaacacatcaaat |
173 |
Q |
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| T |
11751211 |
tgactgaagttgcagaagtgaaaagagaaattgcatctgctatgatgaacacattaaat |
11751269 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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