View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18743_low_7 (Length: 582)
Name: NF18743_low_7
Description: NF18743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18743_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 538; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 538; E-Value: 0
Query Start/End: Original strand, 22 - 563
Target Start/End: Complemental strand, 36467932 - 36467391
Alignment:
| Q |
22 |
cagcatcagcaaatcgcgcagagccagaccacagatccaagtagaaaacgcacacaaccaatccacataaccatacagcagacatccaaatagttacaat |
121 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36467932 |
cagcatcagcaaatcgcgcagagccagaccacagatccaagtagaaaacgcacacaaccaatccacataaccatacagcagacatccaaatagttacaat |
36467833 |
T |
|
| Q |
122 |
gcattcttctttttgcatactaattgacgcataataatgttcccattagaataacgtttcacatcatcctttcttacttcaaacccgtggtattttgcaa |
221 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36467832 |
gcattcttctttttgcatactaattgacgcataataatgttcccattagaataacgtttcacatcatcctttcttacttcaaacccgtggtattttgcaa |
36467733 |
T |
|
| Q |
222 |
acaatacataaaactccgtagcttcatcctctgtgttgaattccatatcctttacatcatcatctgtcacatcattgatgcatttgtaaccatcaaagtt |
321 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36467732 |
acaatacataaaactccgtagcttcatcctctgtgttgaattccatatcccttacatcatcatctgtcacatcattgatgcatttgtaaccatcaaagtt |
36467633 |
T |
|
| Q |
322 |
ctttttcccttgctcattgcaaacaccattaccatggtttaattccacaccgtctgcatctccatcagtacgaacatcgttgctgctattaacttttata |
421 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36467632 |
ctttttcccttgctcattgcaaacaccattaccatggtttaattccacaccgtctgcatctccatcagtacgaacatcgttgctgctattaacttttata |
36467533 |
T |
|
| Q |
422 |
tcttcagtatcactatcaatgtcactatcagtgtcaacatcattaacacaattaaattccaccccatttgtatcattatcagtgtcaatattattaacac |
521 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36467532 |
tcttcagtatcactatcaatgtcactatcagtgtcaacatcattaacacaattaaattccaccccatttgtatcattatcagtgtcaatattattaacac |
36467433 |
T |
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| Q |
522 |
tattaaattccaccttatctgtatcactatatacatcaaaag |
563 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
36467432 |
tattaaattccaccttatctgtatcactatatacatcaaaag |
36467391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 61; Significance: 7e-26; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 278 - 437
Target Start/End: Complemental strand, 28738898 - 28738738
Alignment:
| Q |
278 |
tcatcatctgtcacatcattgatgcatttgtaaccatcaaagttct-ttttcccttgctcattgcaaacaccattaccatggtttaattccacaccgtct |
376 |
Q |
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||||||| |||||||| | | |||||||||||||||| | |||| |||||||||||||| |||||||||||||||||||||| ||||||| || | || |
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| T |
28738898 |
tcatcatttgtcacattactaatgcatttgtaaccattggaattctcttttcccttgctcactgcaaacaccattaccatggttgaattccatactgcct |
28738799 |
T |
|
| Q |
377 |
gcatctccatcagtacgaacatcgttgctgctattaacttttatatcttcagtatcactat |
437 |
Q |
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|||||| |||| ||||||||| | || | |||| |||| |||||||||||||||||||| |
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| T |
28738798 |
acatctctatcactacgaacattgatgtcgttattgacttctatatcttcagtatcactat |
28738738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 278 - 416
Target Start/End: Complemental strand, 28718587 - 28718448
Alignment:
| Q |
278 |
tcatcatctgtcacatcattgatgcatttgtaaccatcaaagttct-ttttcccttgctcattgcaaacaccattaccatggtttaattccacaccgtct |
376 |
Q |
| |
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||||||| ||||||||| ||||||||||||| |||| | | |||| ||||| ||||||| |||||||||||||||||||||| |||| || | || || |
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| T |
28718587 |
tcatcattggtcacatcactgatgcatttgtagccattagaattctcttttcaattgctcactgcaaacaccattaccatggttgaatttcatatcgcct |
28718488 |
T |
|
| Q |
377 |
gcatctccatcagtacgaacatcgttgctgctattaactt |
416 |
Q |
| |
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| ||||| |||||||||||||||||||| ||||||||||| |
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| T |
28718487 |
gtatctctatcagtacgaacatcgttgccgctattaactt |
28718448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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