View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18743_low_8 (Length: 557)

Name: NF18743_low_8
Description: NF18743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18743_low_8
NF18743_low_8
[»] chr2 (11 HSPs)
chr2 (1-541)||(36452360-36452895)
chr2 (75-147)||(37153924-37153996)
chr2 (76-147)||(7833325-7833396)
chr2 (76-147)||(44587673-44587744)
chr2 (78-147)||(25903729-25903798)
chr2 (73-142)||(45651020-45651089)
chr2 (89-141)||(4860275-4860326)
chr2 (78-146)||(8996794-8996862)
chr2 (106-142)||(12486065-12486101)
chr2 (107-135)||(41120030-41120058)
chr2 (75-123)||(41464756-41464804)
[»] chr1 (12 HSPs)
chr1 (73-167)||(101516-101610)
chr1 (73-166)||(101492-101584)
chr1 (73-166)||(40212293-40212386)
chr1 (77-157)||(35944074-35944154)
chr1 (75-138)||(22819176-22819239)
chr1 (73-141)||(39514974-39515042)
chr1 (84-152)||(50105685-50105753)
chr1 (117-164)||(897091-897138)
chr1 (107-139)||(8174165-8174197)
chr1 (74-166)||(22819174-22819266)
chr1 (73-137)||(35944090-35944154)
chr1 (74-142)||(51590471-51590539)
[»] chr4 (18 HSPs)
chr4 (329-537)||(19087204-19087412)
chr4 (75-147)||(12766883-12766955)
chr4 (73-147)||(54357924-54357998)
chr4 (73-134)||(6724914-6724975)
chr4 (76-184)||(50533369-50533475)
chr4 (79-138)||(10554940-10554999)
chr4 (73-138)||(12766884-12766949)
chr4 (78-142)||(20114104-20114168)
chr4 (107-142)||(21861120-21861155)
chr4 (107-142)||(21916983-21917018)
chr4 (75-138)||(56491115-56491178)
chr4 (76-142)||(26066412-26066478)
chr4 (73-123)||(54673350-54673400)
chr4 (78-147)||(4698668-4698737)
chr4 (73-142)||(20459055-20459124)
chr4 (106-142)||(15794799-15794835)
chr4 (76-124)||(30206525-30206573)
chr4 (91-147)||(45828473-45828529)
[»] chr8 (18 HSPs)
chr8 (75-138)||(30112380-30112443)
chr8 (76-139)||(27976764-27976827)
chr8 (76-139)||(28034033-28034096)
chr8 (76-142)||(27976765-27976831)
chr8 (76-142)||(28034034-28034100)
chr8 (78-167)||(325222-325311)
chr8 (73-142)||(9420626-9420695)
chr8 (116-175)||(41175193-41175252)
chr8 (73-147)||(14547793-14547867)
chr8 (77-142)||(27870980-27871045)
chr8 (76-137)||(27870980-27871041)
chr8 (106-139)||(28872189-28872222)
chr8 (76-140)||(27789320-27789384)
chr8 (74-138)||(43409877-43409941)
chr8 (73-135)||(1364161-1364223)
chr8 (76-138)||(10107319-10107377)
chr8 (106-142)||(289152-289188)
chr8 (78-142)||(10396831-10396895)
[»] chr3 (9 HSPs)
chr3 (73-164)||(45361988-45362079)
chr3 (80-142)||(36750790-36750852)
chr3 (73-142)||(28406506-28406575)
chr3 (73-142)||(32711242-32711311)
chr3 (78-147)||(48593187-48593256)
chr3 (76-138)||(32711245-32711307)
chr3 (75-164)||(45362013-45362101)
chr3 (83-147)||(1755893-1755957)
chr3 (107-147)||(26331248-26331288)
[»] chr7 (11 HSPs)
chr7 (73-147)||(47681557-47681631)
chr7 (73-138)||(47612330-47612395)
chr7 (73-138)||(35436262-35436327)
chr7 (75-172)||(37002870-37002967)
chr7 (76-140)||(7430087-7430151)
chr7 (79-167)||(37489783-37489871)
chr7 (76-147)||(37489812-37489883)
chr7 (73-127)||(28838165-28838219)
chr7 (73-147)||(35436256-35436330)
chr7 (73-142)||(40362009-40362078)
chr7 (115-175)||(26422114-26422173)
[»] chr5 (2 HSPs)
chr5 (75-147)||(12442276-12442348)
chr5 (75-164)||(6761051-6761140)
[»] scaffold0025 (1 HSPs)
scaffold0025 (73-147)||(65984-66058)
[»] chr6 (6 HSPs)
chr6 (73-138)||(20703440-20703505)
chr6 (78-142)||(1158284-1158348)
chr6 (79-131)||(2284822-2284874)
chr6 (83-142)||(29938661-29938720)
chr6 (73-147)||(6686855-6686929)
chr6 (74-147)||(20703434-20703507)
[»] scaffold0032 (1 HSPs)
scaffold0032 (73-135)||(47270-47332)


Alignment Details
Target: chr2 (Bit Score: 437; Significance: 0; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 1 - 541
Target Start/End: Original strand, 36452360 - 36452895
Alignment:
Q  1 aaatatacttcaatatctcacaacactagaaataaatataaaattagctatgaagaaaaatatt-cnnnnnnnaggttcattgaataagtaatgtatctg 99  Q
    ||||||||||||||||||||||||||||||||||    ||||||||||||||||||||  | || |       ||||||||| |||||||||||||||||    
T  36452360 aaatatacttcaatatctcacaacactagaaata----taaaattagctatgaagaaatttttttctttttttaggttcattaaataagtaatgtatctg 36452455  T
Q  100 gttaacaatatagaccagatacattaattattcaatgaatctagaaaactaatcttttcatatatatatgagaccgaatgtagtacatgtctaagattga 199  Q
    |||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||  |||    
T  36452456 gttaacaatatagatcagatacatcaattattcaatgaatctagaaaactaatcttttcatat--atatgagaccgaatgtagtacatgtctaagggtga 36452553  T
Q  200 cactgtcattcatgtaaatattttctaagatattataacacatatctaagcttttcatatatatgatgacaatgtatatcttgcttgtaatcagcatttg 299  Q
    |||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36452554 cactttcattcatgtaaatattttctaagatattataacacatgtctaagcttttcatatatatgatgacaatgtatatcttgcttgtaatcagcatttg 36452653  T
Q  300 caggggagagatgtcgtggagacacggaacaatggtttttcttttcaccaagacaagagagagagttgagaggaggaagaccaaacagaacaacatcttg 399  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  36452654 caggggagagatgtcgtggagacacggaacaatggtttttcttttcaccaagacaagatagagagttgagaggaggaagaccaaacagaacaacatcttg 36452753  T
Q  400 tgggtattggaaagctacgggttctcctagctacgtttactcttctaacaacaaagtcattggaataaggaaaaccatgatgttttacataggaaaagct 499  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  36452754 tgggtattggaaagctacgggttctcctagctacgtttactcttctaacaacaaagtcattggaataaggaaaaccatggtgttttacataggaaaagct 36452853  T
Q  500 ccatctggaaggaaaaccaaatggaagatgcatgaatataaa 541  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  36452854 ccatctggaaggaaaaccaaatggaagatgcatgaatataaa 36452895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 75 - 147
Target Start/End: Complemental strand, 37153996 - 37153924
Alignment:
Q  75 gttcattgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaatgaatctagaaaa 147  Q
    ||||||||||||||||||||| |||  | |||||  | |||| |||||||| |||||||||||||||| ||||    
T  37153996 gttcattgaataagtaatgtacctgacttacaatgaaaaccatatacattatttattcaatgaatctaaaaaa 37153924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 76 - 147
Target Start/End: Original strand, 7833325 - 7833396
Alignment:
Q  76 ttcattgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaatgaatctagaaaa 147  Q
    |||||||||||| | ||||||||| || | |||||||| |||||||||||| |||| ||| |||||| ||||    
T  7833325 ttcattgaataattgatgtatctgatttaaaatatagatcagatacattaactatttaataaatctaaaaaa 7833396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 76 - 147
Target Start/End: Complemental strand, 44587744 - 44587673
Alignment:
Q  76 ttcattgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaatgaatctagaaaa 147  Q
    |||||||||| ||| |||||| |||| | |||||||||||| |||||| | |||||||||||| ||| ||||    
T  44587744 ttcattgaatgagtgatgtatgtggtcatcaatatagaccacatacatcatttattcaatgaacctaaaaaa 44587673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 78 - 147
Target Start/End: Original strand, 25903729 - 25903798
Alignment:
Q  78 cattgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaatgaatctagaaaa 147  Q
    |||||||||| |||||||||| ||| |||||  |||  |||||||||||||||| |||| ||||| ||||    
T  25903729 cattgaataattaatgtatctcgtttacaatgaagagtagatacattaattattaaatgtatctaaaaaa 25903798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 73 - 142
Target Start/End: Original strand, 45651020 - 45651089
Alignment:
Q  73 aggttcattgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaatgaatcta 142  Q
    ||||| ||||||||| | ||| ||||| |  | |||||||||||||||||| |||||||||| |||||||    
T  45651020 aggtttattgaataactgatgaatctgttctataatatagaccagatacatcaattattcaaagaatcta 45651089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 89 - 141
Target Start/End: Complemental strand, 4860326 - 4860275
Alignment:
Q  89 taatgtatctggttaacaatatagaccagatacattaattattcaatgaatct 141  Q
    |||||||||||||| | | |||||||||||||||| | |||||||||||||||    
T  4860326 taatgtatctggtttata-tatagaccagatacatcagttattcaatgaatct 4860275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 78 - 146
Target Start/End: Original strand, 8996794 - 8996862
Alignment:
Q  78 cattgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaatgaatctagaaa 146  Q
    |||||||||| |||||||||| ||  | |||| |||| | ||||||| ||||||||||| |||||||||    
T  8996794 cattgaataattaatgtatctagtctataataaagactatatacattgattattcaatgtatctagaaa 8996862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 106 - 142
Target Start/End: Original strand, 12486065 - 12486101
Alignment:
Q  106 aatatagaccagatacattaattattcaatgaatcta 142  Q
    ||||||||||| |||||| ||||||||||||||||||    
T  12486065 aatatagaccaaatacatcaattattcaatgaatcta 12486101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 107 - 135
Target Start/End: Original strand, 41120030 - 41120058
Alignment:
Q  107 atatagaccagatacattaattattcaat 135  Q
    |||||||||||||||||||||||||||||    
T  41120030 atatagaccagatacattaattattcaat 41120058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 75 - 123
Target Start/End: Original strand, 41464756 - 41464804
Alignment:
Q  75 gttcattgaataagtaatgtatctggttaacaatatagaccagatacat 123  Q
    ||||||||||||| |||||||||| ||||  ||||||||| ||||||||    
T  41464756 gttcattgaataattaatgtatctcgttataaatatagactagatacat 41464804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 55; Significance: 2e-22; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 73 - 167
Target Start/End: Original strand, 101516 - 101610
Alignment:
Q  73 aggttcattgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaatgaatctagaaaactaatcttttcatatatata 167  Q
    ||||||||||||||| |||||||||||||| ||||| || |||||||||||||||||||||||||| |||  |||  ||||||||| ||||||||    
T  101516 aggttcattgaataattaatgtatctggtttacaatgtaaaccagatacattaattattcaatgaacctacgaaaagaatcttttcgtatatata 101610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 73 - 166
Target Start/End: Complemental strand, 101584 - 101492
Alignment:
Q  73 aggttcattgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaatgaatctagaaaactaatcttttcatatatat 166  Q
    ||||||||||||||| |||||||||||||| ||| | || |||||||||||||||||||||||||| ||| ||||  ||||||||| |||||||    
T  101584 aggttcattgaataattaatgtatctggtttacattgtaaaccagatacattaattattcaatgaaccta-aaaaagaatcttttcttatatat 101492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 73 - 166
Target Start/End: Complemental strand, 40212386 - 40212293
Alignment:
Q  73 aggttcattgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaatgaatctagaaaactaatcttttcatatatat 166  Q
    |||| |||||||||| |||||||| |  || ||||||||||||||||| |||||||||||||| ||  ||||||| |||| ||||| |||||||    
T  40212386 aggtccattgaataattaatgtattttttttacaatatagaccagatatattaattattcaataaacttagaaaaataatattttcttatatat 40212293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 77 - 157
Target Start/End: Complemental strand, 35944154 - 35944074
Alignment:
Q  77 tcattgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaatgaatctagaaaactaatctttt 157  Q
    ||||||||||| ||||||||||| || ||||| |||| |||||||||||||||||||| ||| ||| ||||  ||||||||    
T  35944154 tcattgaataattaatgtatctgctttacaatgtagatcagatacattaattattcaacgaacctaaaaaatgaatctttt 35944074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 75 - 138
Target Start/End: Complemental strand, 22819239 - 22819176
Alignment:
Q  75 gttcattgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaatgaa 138  Q
    ||||||||||||  ||||||||||| || |||||  |||||| |||||||||||||||||||||    
T  22819239 gttcattgaatagttaatgtatctgatttacaatgaagaccatatacattaattattcaatgaa 22819176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 73 - 141
Target Start/End: Original strand, 39514974 - 39515042
Alignment:
Q  73 aggttcattgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaatgaatct 141  Q
    |||||| |||||||| |||||||||||||| | |||||| | |||||||| || ||||| |||||||||    
T  39514974 aggttcgttgaataactaatgtatctggtttataatatatatcagatacaatagttatttaatgaatct 39515042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 84 - 152
Target Start/End: Complemental strand, 50105753 - 50105685
Alignment:
Q  84 ataagtaatgtatctggttaacaatatagaccagatacattaattattcaatgaatctagaaaactaat 152  Q
    |||| |||||||||| ||| | | |||||| |||||||||| ||||||||||||||||| |||| ||||    
T  50105753 ataattaatgtatctagtttatattatagatcagatacattgattattcaatgaatctaaaaaattaat 50105685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 117 - 164
Target Start/End: Original strand, 897091 - 897138
Alignment:
Q  117 gatacattaattattcaatgaatctagaaaactaatcttttcatatat 164  Q
    |||||||||||||||||||| ||||| |||| |||||||||| |||||    
T  897091 gatacattaattattcaatgtatctaaaaaaataatcttttcttatat 897138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 107 - 139
Target Start/End: Original strand, 8174165 - 8174197
Alignment:
Q  107 atatagaccagatacattaattattcaatgaat 139  Q
    ||||||||||||||||||||| |||||||||||    
T  8174165 atatagaccagatacattaatcattcaatgaat 8174197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 74 - 166
Target Start/End: Original strand, 22819174 - 22819266
Alignment:
Q  74 ggttcattgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaatgaatctagaaaactaatcttttcatatatat 166  Q
    |||||||||||||| |||||||| ||||   || | || | |||||||||||| |||||||||||  || ||||  ||||||||| |||||||    
T  22819174 ggttcattgaataattaatgtatatggtcttcattgtaaatcagatacattaactattcaatgaacgtaaaaaaagaatcttttcttatatat 22819266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 73 - 137
Target Start/End: Original strand, 35944090 - 35944154
Alignment:
Q  73 aggttcattgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaatga 137  Q
    |||||| |||||||| ||||||||||| |  ||| | || | |||||||||||||||||||||||    
T  35944090 aggttcgttgaataattaatgtatctgatctacattgtaaagcagatacattaattattcaatga 35944154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 74 - 142
Target Start/End: Original strand, 51590471 - 51590539
Alignment:
Q  74 ggttcattgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaatgaatcta 142  Q
    ||||||| |||||| |||||||||| ||||  ||||||||| |||||||| | |||  |||||||||||    
T  51590471 ggttcatagaataattaatgtatcttgttataaatatagactagatacatcacttacacaatgaatcta 51590539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 53; Significance: 4e-21; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 329 - 537
Target Start/End: Complemental strand, 19087412 - 19087204
Alignment:
Q  329 caatggtttttcttttcaccaagacaagagagagagttgagaggaggaagaccaaacagaacaacatcttgtgggtattggaaagctacgggttctccta 428  Q
    ||||||||||||||||||||| | |||||||||||    || ||||| ||||| || ||||| ||  ||||||| || ||||| || || |||||||||     
T  19087412 caatggtttttcttttcaccaggtcaagagagagaagcaaggggagggagacctaatagaactactgcttgtggatactggaaggcaacaggttctcctg 19087313  T
Q  429 gctacgtttactcttctaacaacaaagtcattggaataaggaaaaccatgatgttttacataggaaaagctccatctggaaggaaaaccaaatggaagat 528  Q
    | || ||||| |||||  | |||||||| |||||  | | |||||||||| | || || | |||||||||||||  |||||||||||| |||||||||||    
T  19087312 gttatgtttattcttcagataacaaagttattggggtgaagaaaaccatggttttctataaaggaaaagctccaagtggaaggaaaacaaaatggaagat 19087213  T
Q  529 gcatgaata 537  Q
    | |||||||    
T  19087212 gaatgaata 19087204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 75 - 147
Target Start/End: Original strand, 12766883 - 12766955
Alignment:
Q  75 gttcattgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaatgaatctagaaaa 147  Q
    ||||||||||||| ||||||||||  || ||||| ||||||||||||||||||||||||||||| ||| ||||    
T  12766883 gttcattgaataattaatgtatctactttacaatgtagaccagatacattaattattcaatgaacctaaaaaa 12766955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 73 - 147
Target Start/End: Complemental strand, 54357998 - 54357924
Alignment:
Q  73 aggttcattgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaatgaatctagaaaa 147  Q
    ||||||||| ||||| ||||||||||| || ||||| ||||||||||||||||| || |||||||| ||| ||||    
T  54357998 aggttcatttaataattaatgtatctgttttacaatgtagaccagatacattaactactcaatgaacctaaaaaa 54357924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 73 - 134
Target Start/End: Complemental strand, 6724975 - 6724914
Alignment:
Q  73 aggttcattgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaa 134  Q
    ||||||||||||||| |||| |||||| ||  |||| |||||||||||||||||||||||||    
T  6724975 aggttcattgaataattaatatatctgtttttcaatgtagaccagatacattaattattcaa 6724914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 76 - 184
Target Start/End: Original strand, 50533369 - 50533475
Alignment:
Q  76 ttcattgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaatgaatctagaaaactaatcttttcatatatatatgagaccg 175  Q
    |||||| ||||| |||| |||||| || ||||| ||||||||||||||||| || |||||||| ||| |||| |||| |||||   ||||| ||||||||    
T  50533369 ttcattaaataattaatatatctgctttacaatgtagaccagatacattaactactcaatgaacctaaaaaaataatattttc--ttatatttgagaccg 50533466  T
Q  176 aatgtagta 184  Q
    |||| ||||    
T  50533467 aatgaagta 50533475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 79 - 138
Target Start/End: Original strand, 10554940 - 10554999
Alignment:
Q  79 attgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaatgaa 138  Q
    ||||||||| ||||||||||  || |||||  ||||||||||||||||||||||||||||    
T  10554940 attgaataattaatgtatctactttacaatgaagaccagatacattaattattcaatgaa 10554999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 73 - 138
Target Start/End: Complemental strand, 12766949 - 12766884
Alignment:
Q  73 aggttcattgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaatgaa 138  Q
    ||||||||||||||| |||||||||||||  ||| | || |  |||||||||||||||||||||||    
T  12766949 aggttcattgaataattaatgtatctggtctacattgtaaagtagatacattaattattcaatgaa 12766884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 78 - 142
Target Start/End: Original strand, 20114104 - 20114168
Alignment:
Q  78 cattgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaatgaatcta 142  Q
    |||||||||| | |||||| ||||| | ||||||||||| |||||||| ||||||||| ||||||    
T  20114104 cattgaataatttatgtatttggtttagaatatagaccatatacattagttattcaattaatcta 20114168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 107 - 142
Target Start/End: Original strand, 21861120 - 21861155
Alignment:
Q  107 atatagaccagatacattaattattcaatgaatcta 142  Q
    ||||||||||||||||||||||||| ||||||||||    
T  21861120 atatagaccagatacattaattatttaatgaatcta 21861155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 107 - 142
Target Start/End: Original strand, 21916983 - 21917018
Alignment:
Q  107 atatagaccagatacattaattattcaatgaatcta 142  Q
    ||||||||||||||||||||||||| ||||||||||    
T  21916983 atatagaccagatacattaattatttaatgaatcta 21917018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 75 - 138
Target Start/End: Complemental strand, 56491178 - 56491115
Alignment:
Q  75 gttcattgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaatgaa 138  Q
    ||||||||||||| ||||||| || ||||  ||||||||| |||||||||| |||| |||||||    
T  56491178 gttcattgaataattaatgtacctcgttataaatatagactagatacattacttatacaatgaa 56491115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 76 - 142
Target Start/End: Original strand, 26066412 - 26066478
Alignment:
Q  76 ttcattgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaatgaatcta 142  Q
    |||||||||||| | ||||||| |||  | |||||||||||||||||| | ||||| ||||||||||    
T  26066412 ttcattgaataattgatgtatccggtctagaatatagaccagatacatcagttatttaatgaatcta 26066478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 73 - 123
Target Start/End: Original strand, 54673350 - 54673400
Alignment:
Q  73 aggttcattgaataagtaatgtatctggttaacaatatagaccagatacat 123  Q
    ||||||||||||||||||||| |||| ||||  ||||||||| ||||||||    
T  54673350 aggttcattgaataagtaatgcatctcgttataaatatagactagatacat 54673400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 78 - 147
Target Start/End: Original strand, 4698668 - 4698737
Alignment:
Q  78 cattgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaatgaatctagaaaa 147  Q
    |||||||||| | |||||||||||| | | | ||||||| |||||| |||||||||||| ||||| ||||    
T  4698668 cattgaataatttatgtatctggtttagattctagaccatatacataaattattcaatgtatctaaaaaa 4698737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 73 - 142
Target Start/End: Original strand, 20459055 - 20459124
Alignment:
Q  73 aggttcattgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaatgaatcta 142  Q
    ||||||||| ||||| |||| ||| || || | ||| ||||||||||||||||| || ||||||||||||    
T  20459055 aggttcattaaataattaatatatatgttttaaaatgtagaccagatacattaactactcaatgaatcta 20459124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 106 - 142
Target Start/End: Complemental strand, 15794835 - 15794799
Alignment:
Q  106 aatatagaccagatacattaattattcaatgaatcta 142  Q
    |||| |||||||||||||||||||||||||| |||||    
T  15794835 aataaagaccagatacattaattattcaatgtatcta 15794799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 76 - 124
Target Start/End: Complemental strand, 30206573 - 30206525
Alignment:
Q  76 ttcattgaataagtaatgtatctggttaacaatatagaccagatacatt 124  Q
    |||||||||||| | |||||||||||| | ||||||||||| |||||||    
T  30206573 ttcattgaataattgatgtatctggtttataatatagaccaaatacatt 30206525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 91 - 147
Target Start/End: Original strand, 45828473 - 45828529
Alignment:
Q  91 atgtatctggttaacaatatagaccagatacattaattattcaatgaatctagaaaa 147  Q
    |||||| ||||| | | ||||||||| |||||||||||| |||||||||||| ||||    
T  45828473 atgtatttggtttatattatagaccaaatacattaattactcaatgaatctaaaaaa 45828529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 9e-16; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 75 - 138
Target Start/End: Complemental strand, 30112443 - 30112380
Alignment:
Q  75 gttcattgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaatgaa 138  Q
    ||||||||||||| ||||||||||  |||||||| ||||||| |||||||||||||||||||||    
T  30112443 gttcattgaataattaatgtatctatttaacaatgtagaccaaatacattaattattcaatgaa 30112380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 76 - 139
Target Start/End: Complemental strand, 27976827 - 27976764
Alignment:
Q  76 ttcattgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaatgaat 139  Q
    |||||||||||| |||||||||||||  ||| |||||||||||| ||||||||||| |||||||    
T  27976827 ttcattgaataattaatgtatctggtctacattatagaccagatgcattaattatttaatgaat 27976764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 76 - 139
Target Start/End: Complemental strand, 28034096 - 28034033
Alignment:
Q  76 ttcattgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaatgaat 139  Q
    |||||||||||| |||||||||||||  ||| |||||||||||| ||||||||||| |||||||    
T  28034096 ttcattgaataattaatgtatctggtctacattatagaccagatgcattaattatttaatgaat 28034033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 76 - 142
Target Start/End: Original strand, 27976765 - 27976831
Alignment:
Q  76 ttcattgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaatgaatcta 142  Q
    |||||| ||||| ||||| |||||||  | ||| |||||||||||||||||||||||||||||||||    
T  27976765 ttcattaaataattaatgcatctggtctataatgtagaccagatacattaattattcaatgaatcta 27976831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 76 - 142
Target Start/End: Original strand, 28034034 - 28034100
Alignment:
Q  76 ttcattgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaatgaatcta 142  Q
    |||||| ||||| ||||| |||||||  | ||| |||||||||||||||||||||||||||||||||    
T  28034034 ttcattaaataattaatgcatctggtctataatgtagaccagatacattaattattcaatgaatcta 28034100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 78 - 167
Target Start/End: Complemental strand, 325311 - 325222
Alignment:
Q  78 cattgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaatgaatctagaaaactaatcttttcatatatata 167  Q
    |||||||||| |||||||||| ||| |||||  |||| |||||||||||||||| |||| ||||| ||||  ||| ||||| ||||||||    
T  325311 cattgaataattaatgtatctcgtttacaatgaagactagatacattaattattaaatgtatctaaaaaaagaatattttcttatatata 325222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 73 - 142
Target Start/End: Complemental strand, 9420695 - 9420626
Alignment:
Q  73 aggttcattgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaatgaatcta 142  Q
    |||||| |||||||| ||||||| || ||||  |||||||||||||||||||| |||| |||||||||||    
T  9420695 aggttctttgaataattaatgtacctcgttataaatatagaccagatacattacttatacaatgaatcta 9420626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 116 - 175
Target Start/End: Complemental strand, 41175252 - 41175193
Alignment:
Q  116 agatacattaattattcaatgaatctagaaaactaatcttttcatatatatatgagaccg 175  Q
    |||||| |||||||||||||||||||| ||||  || |||||| ||||||||||||||||    
T  41175252 agatacgttaattattcaatgaatctaaaaaaggaaacttttcttatatatatgagaccg 41175193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 73 - 147
Target Start/End: Complemental strand, 14547867 - 14547793
Alignment:
Q  73 aggttcattgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaatgaatctagaaaa 147  Q
    ||||||||| ||||| ||||||||||| || ||||| ||||||||||| ||||| || |||||||| ||| ||||    
T  14547867 aggttcattaaataattaatgtatctgctttacaatgtagaccagatagattaactactcaatgaacctaaaaaa 14547793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 77 - 142
Target Start/End: Original strand, 27870980 - 27871045
Alignment:
Q  77 tcattgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaatgaatcta 142  Q
    ||||| ||||| ||| | |||||||  | ||| |||||||||||||||||||||||||||||||||    
T  27870980 tcattaaataattaaagcatctggtctataatgtagaccagatacattaattattcaatgaatcta 27871045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 76 - 137
Target Start/End: Complemental strand, 27871041 - 27870980
Alignment:
Q  76 ttcattgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaatga 137  Q
    |||||||||||| |||||||||||||  ||| |||||||||||| | ||||||||| |||||    
T  27871041 ttcattgaataattaatgtatctggtctacattatagaccagatgctttaattatttaatga 27870980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 106 - 139
Target Start/End: Original strand, 28872189 - 28872222
Alignment:
Q  106 aatatagaccagatacattaattattcaatgaat 139  Q
    ||||||||||||||||||||||||||||||||||    
T  28872189 aatatagaccagatacattaattattcaatgaat 28872222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 76 - 140
Target Start/End: Complemental strand, 27789384 - 27789320
Alignment:
Q  76 ttcattgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaatgaatc 140  Q
    |||||||||||| | |||||| |||| || | |||| ||||||||||| ||||||||||||||||    
T  27789384 ttcattgaataactgatgtatttggtcaatattatataccagatacatcaattattcaatgaatc 27789320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 74 - 138
Target Start/End: Complemental strand, 43409941 - 43409877
Alignment:
Q  74 ggttcattgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaatgaa 138  Q
    |||||||||||||| ||||||| || ||||  ||||||||| |||||||||| |||| |||||||    
T  43409941 ggttcattgaataattaatgtacctcgttataaatatagactagatacattacttatacaatgaa 43409877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 73 - 135
Target Start/End: Complemental strand, 1364223 - 1364161
Alignment:
Q  73 aggttcattgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaat 135  Q
    ||||||||||||||| |||||||| | ||| ||| | ||| ||| ||||||||||||||||||    
T  1364223 aggttcattgaataaataatgtatttagtttacattgtagtccaaatacattaattattcaat 1364161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 76 - 138
Target Start/End: Original strand, 10107319 - 10107377
Alignment:
Q  76 ttcattgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaatgaa 138  Q
    |||||||||||| |||||||| ||||    |||||||||||||||||| | ||||||||||||    
T  10107319 ttcattgaataattaatgtatatggt----aatatagaccagatacatcagttattcaatgaa 10107377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 106 - 142
Target Start/End: Complemental strand, 289188 - 289152
Alignment:
Q  106 aatatagaccagatacattaattattcaatgaatcta 142  Q
    ||||||||||| ||||||||| |||||||||||||||    
T  289188 aatatagaccaaatacattaaatattcaatgaatcta 289152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 78 - 142
Target Start/End: Complemental strand, 10396895 - 10396831
Alignment:
Q  78 cattgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaatgaatcta 142  Q
    ||||||| || | |||||| ||||| | ||||||||||| |||||||| ||||||||| ||||||    
T  10396895 cattgaacaatttatgtatttggtttagaatatagaccatatacattagttattcaattaatcta 10396831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 9e-16; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 73 - 164
Target Start/End: Complemental strand, 45362079 - 45361988
Alignment:
Q  73 aggttcattgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaatgaatctagaaaactaatcttttcatatat 164  Q
    ||||| ||||||||| ||||||||||| || ||||| |||||||||||||||||||| ||||||||  || ||||  ||||||||| |||||    
T  45362079 aggttaattgaataattaatgtatctgctttacaatgtagaccagatacattaattactcaatgaacttaaaaaatgaatcttttcttatat 45361988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 80 - 142
Target Start/End: Original strand, 36750790 - 36750852
Alignment:
Q  80 ttgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaatgaatcta 142  Q
    |||||||| ||||||||||| || ||||| |||| |||||||||||| || ||||||||||||    
T  36750790 ttgaataattaatgtatctgctttacaatgtagatcagatacattaactactcaatgaatcta 36750852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 73 - 142
Target Start/End: Complemental strand, 28406575 - 28406506
Alignment:
Q  73 aggttcattgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaatgaatcta 142  Q
    ||||||||||||||| | ||||| | |||  | ||||||||||| ||||||||||||||||| |||||||    
T  28406575 aggttcattgaataatttatgtacccggtctagaatatagaccaaatacattaattattcaacgaatcta 28406506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 73 - 142
Target Start/End: Original strand, 32711242 - 32711311
Alignment:
Q  73 aggttcattgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaatgaatcta 142  Q
    ||||||||||||||| | |||||| |||   | | |||||||||||||||| ||||||||||||||||||    
T  32711242 aggttcattgaataattgatgtatttggcctatattatagaccagatacatcaattattcaatgaatcta 32711311  T

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Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 78 - 147
Target Start/End: Original strand, 48593187 - 48593256
Alignment:
Q  78 cattgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaatgaatctagaaaa 147  Q
    |||||||||| | ||||||| |||  | ||||||||||| |||||| |||||||||||||||||| ||||    
T  48593187 cattgaataattgatgtatcgggtctagaatatagaccaaatacataaattattcaatgaatctaaaaaa 48593256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 76 - 138
Target Start/End: Complemental strand, 32711307 - 32711245
Alignment:
Q  76 ttcattgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaatgaa 138  Q
    |||||||||||| | |||||||||||  | ||||||| ||| |||||| ||||||||||||||    
T  32711307 ttcattgaataattgatgtatctggtctataatataggccaaatacatcaattattcaatgaa 32711245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 75 - 164
Target Start/End: Original strand, 45362013 - 45362101
Alignment:
Q  75 gttcattgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaatgaatctagaaaactaatcttttcatatat 164  Q
    ||||||||| ||| |||||||||||||  ||| | || | ||||||||||||||||||||| || ||| ||||  ||||||||| |||||    
T  45362013 gttcattgagtaattaatgtatctggtctacattgtaaagcagatacattaattattcaattaaccta-aaaaagaatcttttcttatat 45362101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 83 - 147
Target Start/End: Complemental strand, 1755957 - 1755893
Alignment:
Q  83 aataagtaatgtatctggttaacaatatagaccagatacattaattattcaatgaatctagaaaa 147  Q
    ||||| |||||||||||||    | ||| ||||| |||||||||||||| |||||||||||||||    
T  1755957 aataactaatgtatctggtctgtattatggaccaaatacattaattattgaatgaatctagaaaa 1755893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 107 - 147
Target Start/End: Complemental strand, 26331288 - 26331248
Alignment:
Q  107 atatagaccagatacattaattattcaatgaatctagaaaa 147  Q
    ||||||||||||||||||| | |||||||||| ||||||||    
T  26331288 atatagaccagatacattagtcattcaatgaacctagaaaa 26331248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 73 - 147
Target Start/End: Original strand, 47681557 - 47681631
Alignment:
Q  73 aggttcattgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaatgaatctagaaaa 147  Q
    ||||| ||| ||||| ||||||||||| || ||||||| ||||||||||||||| || |||||||||||| ||||    
T  47681557 aggtttattaaataattaatgtatctgctttacaatatcgaccagatacattaactactcaatgaatctaaaaaa 47681631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 73 - 138
Target Start/End: Original strand, 47612330 - 47612395
Alignment:
Q  73 aggttcattgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaatgaa 138  Q
    ||||||||||||||| |||||||||| ||||  ||||||||| |||||||||| |||| |||||||    
T  47612330 aggttcattgaataattaatgtatctcgttataaatatagactagatacattacttatacaatgaa 47612395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 73 - 138
Target Start/End: Original strand, 35436262 - 35436327
Alignment:
Q  73 aggttcattgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaatgaa 138  Q
    ||||||||||||||| | ||||||||||| || | |||| || |||||||| ||||||||||||||    
T  35436262 aggttcattgaataacttatgtatctggtcaatattatatactagatacatcaattattcaatgaa 35436327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 75 - 172
Target Start/End: Complemental strand, 37002967 - 37002870
Alignment:
Q  75 gttcattgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaatgaatctagaaaactaatcttttcatatatatatgaga 172  Q
    ||||||| ||||| |||||||| |  || ||||| ||||| | ||| ||||||||||||||||| ||| ||||  ||| ||||| |||||||||||||    
T  37002967 gttcattaaataaataatgtatttattttacaatgtagacaaaatatattaattattcaatgaacctataaaaagaatattttcttatatatatgaga 37002870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 76 - 140
Target Start/End: Original strand, 7430087 - 7430151
Alignment:
Q  76 ttcattgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaatgaatc 140  Q
    |||| ||||||| | |||||| ||||| |||||||||||||||||||| | ||||| ||||||||    
T  7430087 ttcagtgaataatttatgtatttggtttacaatatagaccagatacatcagttatttaatgaatc 7430151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 79 - 167
Target Start/End: Complemental strand, 37489871 - 37489783
Alignment:
Q  79 attgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaatgaatctagaaaactaatcttttcatatatata 167  Q
    ||||||||| ||||||||||| || ||||| |  || ||||| |||||||||||||||||| ||  ||| |||| ||||| ||||||||    
T  37489871 attgaataattaatgtatctgttttacaatgtgaactagatatattaattattcaatgaatttaagaaaataatattttcttatatata 37489783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 76 - 147
Target Start/End: Original strand, 37489812 - 37489883
Alignment:
Q  76 ttcattgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaatgaatctagaaaa 147  Q
    |||||||||||| |||| ||||| ||| ||| | || | ||||||||||||||||||||| |||||| ||||    
T  37489812 ttcattgaataattaatatatctagttcacattgtaaaacagatacattaattattcaatcaatctaaaaaa 37489883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 73 - 127
Target Start/End: Complemental strand, 28838219 - 28838165
Alignment:
Q  73 aggttcattgaataagtaatgtatctggttaacaatatagaccagatacattaat 127  Q
    |||| |||||||||| |||||||||| ||| |||||  |||||||||||||||||    
T  28838219 aggtacattgaataattaatgtatctcgtttacaatgaagaccagatacattaat 28838165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 73 - 147
Target Start/End: Complemental strand, 35436330 - 35436256
Alignment:
Q  73 aggttcattgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaatgaatctagaaaa 147  Q
    ||||||||||||||| | |||||||| ||  | ||||| |||||||||||| | |||||||||||| ||| ||||    
T  35436330 aggttcattgaataattgatgtatctagtatataatattgaccagatacataagttattcaatgaacctaaaaaa 35436256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 73 - 142
Target Start/End: Complemental strand, 40362078 - 40362009
Alignment:
Q  73 aggttcattgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaatgaatcta 142  Q
    ||||| ||||||| | |||||||| ||||  |||||||| | || |||||| ||||||||||||||||||    
T  40362078 aggtttattgaatgattaatgtatttggtctacaatataaatcaaatacatcaattattcaatgaatcta 40362009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 115 - 175
Target Start/End: Original strand, 26422114 - 26422173
Alignment:
Q  115 cagatacattaattattcaatgaatctagaaaactaatcttttcatatatatatgagaccg 175  Q
    ||||||||||||||||||||| || ||| ||||  ||||||| | ||||||||||||||||    
T  26422114 cagatacattaattattcaattaaccta-aaaaagaatctttccttatatatatgagaccg 26422173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 75 - 147
Target Start/End: Original strand, 12442276 - 12442348
Alignment:
Q  75 gttcattgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaatgaatctagaaaa 147  Q
    ||||||| ||||| ||||||||||| || ||||| ||||||||||||||||| || |||||||| ||| ||||    
T  12442276 gttcattaaataattaatgtatctgttttacaatgtagaccagatacattaactactcaatgaacctaaaaaa 12442348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 75 - 164
Target Start/End: Complemental strand, 6761140 - 6761051
Alignment:
Q  75 gttcattgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaatgaatctagaaaactaatcttttcatatat 164  Q
    ||||||||||||| |||||||| | ||| ||| | ||| ||| ||| ||||||||||||||||| ||| |||| || |||| || |||||    
T  6761140 gttcattgaataaataatgtatttagtttacattgtagtccaaatatattaattattcaatgaacctaaaaaaatattcttctcttatat 6761051  T

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Target: scaffold0025 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 73 - 147
Target Start/End: Complemental strand, 66058 - 65984
Alignment:
Q  73 aggttcattgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaatgaatctagaaaa 147  Q
    ||||||||||||||| | ||||||  |||| | ||||||||| |||||||| |||| ||||||||||||| ||||    
T  66058 aggttcattgaataatttatgtattcggtttaaaatatagactagatacatgaatttttcaatgaatctaaaaaa 65984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000008; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 73 - 138
Target Start/End: Original strand, 20703440 - 20703505
Alignment:
Q  73 aggttcattgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaatgaa 138  Q
    ||||||||||||||  |||||||| ||||  | ||||||||||| ||||||||| |||||||||||    
T  20703440 aggttcattgaatatttaatgtatttggtctataatatagaccaaatacattaaatattcaatgaa 20703505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 78 - 142
Target Start/End: Complemental strand, 1158348 - 1158284
Alignment:
Q  78 cattgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaatgaatcta 142  Q
    |||||||||| | |||||| ||||  | ||||||||||  |||||||||||||||||||||||||    
T  1158348 cattgaataattgatgtatttggtctagaatatagaccgaatacattaattattcaatgaatcta 1158284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 79 - 131
Target Start/End: Original strand, 2284822 - 2284874
Alignment:
Q  79 attgaataagtaatgtatctggttaacaatatagaccagatacattaattatt 131  Q
    ||||||||| ||||||||||| || | |||||||| |||||||||||||||||    
T  2284822 attgaataattaatgtatctgatttataatatagatcagatacattaattatt 2284874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 83 - 142
Target Start/End: Original strand, 29938661 - 29938720
Alignment:
Q  83 aataagtaatgtatctggttaacaatatagaccagatacattaattattcaatgaatcta 142  Q
    ||||| |||||||||| ||  |||||| |||| ||||||||||||||||||||| |||||    
T  29938661 aataattaatgtatctagtatacaataaagactagatacattaattattcaatgtatcta 29938720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 73 - 147
Target Start/End: Original strand, 6686855 - 6686929
Alignment:
Q  73 aggttcattgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaatgaatctagaaaa 147  Q
    ||||||||||||||| | |||||| | ||| ||| | ||| ||| ||||||||||||||||||||| ||| ||||    
T  6686855 aggttcattgaataaatgatgtatttagtttacattgtagtccaaatacattaattattcaatgaacctaaaaaa 6686929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 74 - 147
Target Start/End: Complemental strand, 20703507 - 20703434
Alignment:
Q  74 ggttcattgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaatgaatctagaaaa 147  Q
    |||||||||||||  |||||||| ||||  | | ||||||||| ||||||||| ||||||||||| ||| ||||    
T  20703507 ggttcattgaatatttaatgtatttggtctatattatagaccaaatacattaaatattcaatgaacctaaaaaa 20703434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 73 - 135
Target Start/End: Original strand, 47270 - 47332
Alignment:
Q  73 aggttcattgaataagtaatgtatctggttaacaatatagaccagatacattaattattcaat 135  Q
    ||||||||||||||| |||| | |||| || | ||| ||||||| ||||||||||||||||||    
T  47270 aggttcattgaataattaatatttctgttttaaaatgtagaccaaatacattaattattcaat 47332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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