View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18743_low_9 (Length: 550)
Name: NF18743_low_9
Description: NF18743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18743_low_9 |
 | |
|
| [»] chr6 (1 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 440; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 9 - 550
Target Start/End: Complemental strand, 6185960 - 6185423
Alignment:
| Q |
9 |
aggaggagcagagatggtactaagaatgtgttcaagatactatgatggttatggaattttgaaagatcttgacaatgaatctatgctgaaattcgaaagc |
108 |
Q |
| |
|
||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6185960 |
aggagcagccgagatggtactaagaatgtgttcaagatactatgatggttatggaattttgaaagatcttgacaatgaatctatgctgaaattcgaaagc |
6185861 |
T |
|
| Q |
109 |
attattcaaggtatggcagctagtagtcttcgttgcatcgctttagcgtgtacagaagtctcagacgaaaagctaggacatgaaggagacaacaccaaga |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6185860 |
attattcaaggtatggcagctagtagtcttcgttgcatcgctttagcgtgtacagaagtctcagacgaaaagctaggacatgaaggagacaacaccaaga |
6185761 |
T |
|
| Q |
209 |
tggtggtaaaagagaatgatttaacattgttaggacttgtcggcattaaggatccatgtcgcccaggggtgaagacagcggtggaagcttgccaacatgc |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6185760 |
tggtggtaaaagagaatgatttaacattgttaggacttgtcggcattaaggatccatgtcgcccaggggtgaagacagcggtggaagcttgccaacatgc |
6185661 |
T |
|
| Q |
309 |
tggtgtgaatgtcaaaatgatcacaggtattgctaaaatatctcatttatcagtaacttaatctttcgatcgatattgactacaaaatcctctatttata |
408 |
Q |
| |
|
|||||||||||||||||||| ||||||||| ||| |||||||||||||| |||||||| |||||| || |||| || || |||||| |||||||||| |
|
|
| T |
6185660 |
cggtgtgaatgtcaaaatgattacaggtattactataatatctcatttatgagtaacttgatcttt-ga---atatcgaatataaaatcgtctatttata |
6185565 |
T |
|
| Q |
409 |
catacgagtctatacgaaaatgatggcaaactttatttctgattataataggtgacaatgttttcactgcaaaagctatagcatttgaatgtggaattct |
508 |
Q |
| |
|
||||| |||||| | |||||||||| | |||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
6185564 |
catacaagtctacatgaaaatgatgccgaactttatctctgattataataggtgacaatgttttcactgcgaaagctatagcatttgaatgtggaattct |
6185465 |
T |
|
| Q |
509 |
tcaacctaatcaggacacagatgaaacggtggttgaaggcga |
550 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
6185464 |
tcaacctaatcaggacatagatgaaacggtggttgaaggcga |
6185423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 9 - 359
Target Start/End: Complemental strand, 4236867 - 4236517
Alignment:
| Q |
9 |
aggaggagcagagatggtactaagaatgtgttcaagatactatgatggttatggaattttgaaagatcttgacaatgaatctatgctgaaattcgaaagc |
108 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| |||| ||||||||| |||||||| ||||||||||||||||||| | ||| ||||||||||||| |
|
|
| T |
4236867 |
aggagcagcagagatggtactaagaatgtgttcaaaataccatgatggttttggaatttcgaaagatcttgacaatgaaaccatgttgaaattcgaaagg |
4236768 |
T |
|
| Q |
109 |
attattcaaggtatggcagctagtagtcttcgttgcatcgctttagcgtgtacagaagtctcagacgaaaagctaggacatgaaggagacaacaccaaga |
208 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||| |||| |||| |||||||| |||| | | ||||||||| | | ||||| |
|
|
| T |
4236767 |
attattcaaggtatggcggctagtagtcttcgttgcatcgctttagcgtatacaaaagttacagacgaagagcttgaagttgaaggagatatgaacaaga |
4236668 |
T |
|
| Q |
209 |
tggtggtaaaagagaatgatttaacattgttaggacttgtcggcattaaggatccatgtcgcccaggggtgaagacagcggtggaagcttgccaacatgc |
308 |
Q |
| |
|
||||||||||||| |||| ||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| | |||||||||||||||||||| |
|
|
| T |
4236667 |
tggtggtaaaagacaatggtttaacattgttaggacttgtaggcattaaggatccatgtcgcccgggggtgaagacgacagtggaagcttgccaacatgc |
4236568 |
T |
|
| Q |
309 |
tggtgtgaatgtcaaaatgatcacaggtattgctaaaatatctcatttatc |
359 |
Q |
| |
|
||||||||||||||||||||| ||||||||| ||||||||||| ||||||| |
|
|
| T |
4236567 |
tggtgtgaatgtcaaaatgattacaggtattactaaaatatcttatttatc |
4236517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 458 - 550
Target Start/End: Complemental strand, 4236391 - 4236299
Alignment:
| Q |
458 |
aggtgacaatgttttcactgcaaaagctatagcatttgaatgtggaattcttcaacctaatcaggacacagatgaaacggtggttgaaggcga |
550 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| |
|
|
| T |
4236391 |
aggtgacaatgttttcactgcaaaagctatagcatttgaatgtggaattcttcaacctaatcaggacacggatgaaacagtggttgaaggcga |
4236299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 61; Significance: 6e-26; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 9 - 105
Target Start/End: Complemental strand, 21847718 - 21847622
Alignment:
| Q |
9 |
aggaggagcagagatggtactaagaatgtgttcaagatactatgatggttatggaattttgaaagatcttgacaatgaatctatgctgaaattcgaa |
105 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||| || ||| | |||||||||||||||||||||||||| ||||||| ||||||||||| |
|
|
| T |
21847718 |
aggagaagcagagatggtactaagaatgtgttcaagatattacattggctgtggaattttgaaagatcttgacaatggatctatgttgaaattcgaa |
21847622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University