View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18744_high_4 (Length: 325)

Name: NF18744_high_4
Description: NF18744
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18744_high_4
NF18744_high_4
[»] chr2 (17 HSPs)
chr2 (1-317)||(29137814-29138130)
chr2 (36-247)||(15825137-15825346)
chr2 (36-292)||(15390484-15390738)
chr2 (173-247)||(20120330-20120404)
chr2 (36-285)||(29710963-29711208)
chr2 (36-262)||(19050334-19050558)
chr2 (151-265)||(36267463-36267576)
chr2 (94-294)||(3586299-3586497)
chr2 (171-247)||(45714978-45715054)
chr2 (151-242)||(24499777-24499867)
chr2 (31-257)||(10923059-10923283)
chr2 (151-247)||(12168955-12169051)
chr2 (151-262)||(45258165-45258275)
chr2 (151-261)||(12127676-12127785)
chr2 (168-294)||(18135807-18135933)
chr2 (151-246)||(18770296-18770392)
chr2 (185-246)||(24157352-24157413)
[»] chr7 (13 HSPs)
chr7 (27-311)||(13292013-13292295)
chr7 (36-306)||(16986991-16987259)
chr7 (151-309)||(9867952-9868109)
chr7 (24-301)||(9135248-9135523)
chr7 (94-247)||(34854226-34854377)
chr7 (151-261)||(21161211-21161319)
chr7 (173-265)||(12644750-12644842)
chr7 (185-247)||(5925521-5925583)
chr7 (171-247)||(39879370-39879446)
chr7 (149-247)||(10287607-10287704)
chr7 (151-292)||(5863125-5863265)
chr7 (62-247)||(26762836-26763019)
chr7 (168-236)||(9573455-9573523)
[»] scaffold0002 (1 HSPs)
scaffold0002 (36-306)||(379640-379908)
[»] chr6 (18 HSPs)
chr6 (27-293)||(12449473-12449737)
chr6 (36-266)||(31295434-31295662)
chr6 (27-244)||(34064181-34064396)
chr6 (171-247)||(34187282-34187358)
chr6 (101-294)||(9403113-9403299)
chr6 (31-244)||(18566643-18566854)
chr6 (36-262)||(22497197-22497421)
chr6 (151-264)||(18147272-18147384)
chr6 (172-261)||(30680961-30681050)
chr6 (153-258)||(19331695-19331799)
chr6 (58-247)||(27860869-27861056)
chr6 (65-240)||(689786-689958)
chr6 (56-317)||(19276996-19277260)
chr6 (168-230)||(19730620-19730682)
chr6 (185-250)||(12424360-12424425)
chr6 (171-247)||(9292051-9292127)
chr6 (151-247)||(14080467-14080561)
chr6 (151-247)||(19305447-19305542)
[»] chr5 (11 HSPs)
chr5 (27-317)||(22865674-22865962)
chr5 (24-165)||(31202262-31202403)
chr5 (187-247)||(26348127-26348187)
chr5 (151-293)||(25537342-25537483)
chr5 (26-247)||(24546330-24546544)
chr5 (62-250)||(26994531-26994717)
chr5 (27-90)||(25828878-25828941)
chr5 (151-261)||(22903062-22903171)
chr5 (185-306)||(31202474-31202595)
chr5 (151-260)||(20025253-20025361)
chr5 (174-262)||(16621176-16621264)
[»] chr3 (17 HSPs)
chr3 (36-305)||(12516110-12516377)
chr3 (24-316)||(25495853-25496142)
chr3 (27-306)||(12731451-12731728)
chr3 (56-277)||(12108372-12108591)
chr3 (36-259)||(431215-431436)
chr3 (64-259)||(17485553-17485744)
chr3 (62-247)||(1770808-1770992)
chr3 (151-223)||(17143762-17143833)
chr3 (172-262)||(21649381-21649471)
chr3 (151-257)||(9801097-9801201)
chr3 (27-247)||(14859989-14860207)
chr3 (151-305)||(12251913-12252066)
chr3 (151-209)||(28723787-28723844)
chr3 (202-247)||(2311897-2311942)
chr3 (192-301)||(20622335-20622444)
chr3 (192-264)||(8122967-8123039)
chr3 (151-247)||(21342300-21342395)
[»] scaffold0294 (1 HSPs)
scaffold0294 (62-222)||(167-326)
[»] chr1 (21 HSPs)
chr1 (168-317)||(14255059-14255208)
chr1 (36-290)||(23728719-23728970)
chr1 (24-259)||(12177357-12177590)
chr1 (171-293)||(4601519-4601641)
chr1 (63-285)||(21682516-21682736)
chr1 (151-264)||(22414741-22414853)
chr1 (172-284)||(26977686-26977798)
chr1 (151-262)||(16050362-16050472)
chr1 (56-246)||(52565564-52565750)
chr1 (151-261)||(33101520-33101629)
chr1 (168-305)||(16299603-16299739)
chr1 (151-239)||(5671761-5671848)
chr1 (151-247)||(25408079-25408174)
chr1 (148-247)||(1659799-1659897)
chr1 (151-262)||(16030363-16030473)
chr1 (185-247)||(21098891-21098953)
chr1 (27-135)||(14254932-14255040)
chr1 (151-247)||(34273070-34273165)
chr1 (168-244)||(48637537-48637613)
chr1 (185-246)||(3590811-3590872)
chr1 (198-262)||(8018917-8018981)
[»] chr4 (13 HSPs)
chr4 (36-303)||(15742053-15742317)
chr4 (62-252)||(15514486-15514674)
chr4 (36-231)||(16012371-16012563)
chr4 (151-265)||(12683750-12683863)
chr4 (43-244)||(14601921-14602120)
chr4 (24-283)||(19643649-19643906)
chr4 (171-261)||(10981835-10981925)
chr4 (42-262)||(5518508-5518726)
chr4 (151-239)||(47253268-47253355)
chr4 (151-264)||(19809668-19809779)
chr4 (151-266)||(29157066-29157180)
chr4 (176-276)||(3981904-3982002)
chr4 (175-244)||(13171065-13171134)
[»] chr8 (14 HSPs)
chr8 (56-250)||(24576502-24576694)
chr8 (65-238)||(21416730-21416901)
chr8 (151-242)||(30477629-30477719)
chr8 (206-284)||(20055525-20055603)
chr8 (172-262)||(23269214-23269304)
chr8 (172-241)||(3459517-3459586)
chr8 (151-258)||(13754730-13754836)
chr8 (62-241)||(17698210-17698387)
chr8 (151-260)||(24507427-24507535)
chr8 (150-246)||(26916910-26917005)
chr8 (151-242)||(13764977-13765067)
chr8 (151-258)||(18322915-18323021)
chr8 (185-247)||(4565439-4565501)
chr8 (173-250)||(1909742-1909819)
[»] scaffold0205 (2 HSPs)
scaffold0205 (39-262)||(22854-23075)
scaffold0205 (94-285)||(10872-11061)
[»] scaffold0140 (1 HSPs)
scaffold0140 (26-293)||(6235-6499)
[»] scaffold0074 (1 HSPs)
scaffold0074 (173-294)||(35189-35310)
[»] scaffold0005 (1 HSPs)
scaffold0005 (43-244)||(215258-215457)
[»] scaffold0380 (1 HSPs)
scaffold0380 (62-293)||(6785-7014)
[»] scaffold0013 (1 HSPs)
scaffold0013 (168-247)||(4453-4532)
[»] scaffold0464 (1 HSPs)
scaffold0464 (27-306)||(11440-11713)
[»] scaffold0479 (1 HSPs)
scaffold0479 (27-317)||(4953-5239)
[»] scaffold0101 (2 HSPs)
scaffold0101 (177-279)||(10756-10861)
scaffold0101 (24-83)||(10621-10680)
[»] scaffold0505 (1 HSPs)
scaffold0505 (151-262)||(7853-7963)
[»] scaffold0092 (1 HSPs)
scaffold0092 (151-285)||(21631-21764)
[»] scaffold0263 (1 HSPs)
scaffold0263 (64-221)||(20424-20579)
[»] scaffold0291 (1 HSPs)
scaffold0291 (151-223)||(8590-8661)
[»] scaffold0022 (1 HSPs)
scaffold0022 (198-247)||(69283-69332)


Alignment Details
Target: chr2 (Bit Score: 250; Significance: 1e-139; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 317
Target Start/End: Complemental strand, 29138130 - 29137814
Alignment:
Q  1 cgcaccgtgc-acacaggagcaagccccgcgcgagaatcaccctacacgtgtactactccgcccctaatcacacgcagcataactcggagatgattatga 99  Q
    |||||||||| |||||||||||||||||||||||| || |||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||    
T  29138130 cgcaccgtgccacacaggagcaagccccgcgcgaggattaccctacacgtgtactactccgtccctaatcacacgcagcataactcggagatggttatga 29138031  T
Q  100 tcaacgcgtgcctatatagaggtggacttgcttcactctcggggtacattctcactttccacaacattttcttacacactctttgtcagttgcattaatg 199  Q
     ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||    
T  29138030 ccaacgcgtgcccatatagaggtggacttgcttcactctcggggtacattctcactttccacaaca-tttcttacacactctttctcagttgcattaatg 29137932  T
Q  200 acttgagcgtcggtgtgctaacgtacctgcagacacctttcgttccactgcgatgactcatcgtcgctgtgccggaagccgttaccatcacaccgaaaca 299  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||  ||||||||||||||||| |||||||||||||||||||||||||| |||||    
T  29137931 acttgagcgtcggtgtgctaacgtacctgcagacatctttcgttccacctcgatgactcatcgtcgccgtgccggaagccgttaccatcacaccaaaaca 29137832  T
Q  300 ttctctgtcgcctttgct 317  Q
    |||||||||||| |||||    
T  29137831 ttctctgtcgccgttgct 29137814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 36 - 247
Target Start/End: Complemental strand, 15825346 - 15825137
Alignment:
Q  36 atcaccctacacgtgtactactccgcccctaatcacacgcagcataactcggagatgattatgatcaacgcgtgcctatatagaggtggacttgcttcac 135  Q
    ||||||||||| |||| |||||||| || ||| ||||||| |||||||||| ||| | |||||| ||||||| ||||||| |  |||| |||||||||||    
T  15825346 atcaccctacatgtgtcctactccgtccttaaacacacgccgcataactcgaagacggttatgaccaacgcgcgcctatacaagggtgaacttgcttcac 15825247  T
Q  136 tctcggggtacattctcactttccacaacattttcttacacactctttgtcagttgcattaatgacttgagcgtcggtgtgctaacgtacctgcagacac 235  Q
     |||  ||||||   | ||||| ||||||| ||||| ||||||||||| |||||| |||||  ||||||||||||   |||||||||| |||||||||||    
T  15825246 cctcaaggtacaca-tgacttttcacaacactttct-acacactctttctcagttccattaccgacttgagcgtcaaagtgctaacgtgcctgcagacac 15825149  T
Q  236 ctttcgttccac 247  Q
     |||||||||||    
T  15825148 atttcgttccac 15825137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 36 - 292
Target Start/End: Original strand, 15390484 - 15390738
Alignment:
Q  36 atcaccctacacgtgtactactccgcccctaatcacacgcagcataactcggagatgattatgatcaacgcgtgcctatatagaggtggacttgcttcac 135  Q
    |||||||||||||||| || ||||| ||||||||||||   ||||||| ||| || | |||||  | ||||| |||||||||  |||| |||||||||||    
T  15390484 atcaccctacacgtgtcctgctccgtccctaatcacacatcgcataacccggggacggttatggcctacgcgcgcctatataagggtgaacttgcttcac 15390583  T
Q  136 tctcggggtacattctcactttccacaacattttcttacacactctttgtcagttgcattaatgacttgagcgtcggtgtgctaacgtacctgcagacac 235  Q
     |||  ||||||   ||||||| |||||||  |||||||||||| ||| | |||| ||| | | |||||||||||   |||||||||| ||   || ||     
T  15390584 cctcaaggtaca-catcacttttcacaaca-cttcttacacactgtttattagttccatcacttacttgagcgtcaaagtgctaacgtgccaataggcag 15390681  T
Q  236 ctttcgttccactgcgatgactcatcgtcgctgtgccggaagccgttaccatcacac 292  Q
    |||||||||||  |||| |||||||||  || |||||||||||||||||| ||||||    
T  15390682 ctttcgttccatcgcgaagactcatcgctgccgtgccggaagccgttaccgtcacac 15390738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 173 - 247
Target Start/End: Complemental strand, 20120404 - 20120330
Alignment:
Q  173 acacactctttgtcagttgcattaatgacttgagcgtcggtgtgctaacgtacctgcagacacctttcgttccac 247  Q
    ||||||||||| |||||| ||||| ||||||||| ||||| |||||||||| |||||||||||||||||||||||    
T  20120404 acacactctttctcagtttcattactgacttgagagtcggagtgctaacgtgcctgcagacacctttcgttccac 20120330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 36 - 285
Target Start/End: Complemental strand, 29711208 - 29710963
Alignment:
Q  36 atcaccctacacgtgtactactccgcccctaatcacacgcagcataactcggagatgattatgatcaacgcgtgcctatatagaggtggacttgcttcac 135  Q
    ||||| |||||||| | || | |||| |||||||||| || ||||||| |||||| | ||| |  ||| ||| |||||||||  |||| |||||||||||    
T  29711208 atcacgctacacgtatccttccccgctcctaatcacatgccgcataacacggagacggttaagcccaatgcgcgcctatataagggtgaacttgcttcac 29711109  T
Q  136 tctcggggtacattctcactttccacaacattttcttacacactctttgtcagttgcattaatgacttgagcgtcggtgtgctaacgtacctgcagacac 235  Q
     |||  ||||||   ||||||| |||||||  ||| ||||| |||||  ||| || ||||| |||||||||||| || |||||||||| | |||| ||||    
T  29711108 cctcaaggtaca-catcacttttcacaaca-cttcgtacactctctt--tcaattccattagtgacttgagcgttggagtgctaacgtgcatgcatacac 29711013  T
Q  236 ctttcgttccactgcgatgactcatcgtcgctgtgccggaagccgttacc 285  Q
    |||| ||||||| |||| ||| ||||| |||||| | |||||||||||||    
T  29711012 cttttgttccaccgcgaagacgcatcgccgctgtactggaagccgttacc 29710963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 36 - 262
Target Start/End: Original strand, 19050334 - 19050558
Alignment:
Q  36 atcaccctacacgtgtactactccgcccctaatcacacgcagcataactcggagatgattatgatcaacgcgtgcctatatagaggtggacttgcttcac 135  Q
    |||||||||||| ||| || ||||   |||||||| |||| ||||||| ||||| |  |||||  ||||||  |||||||||  |||| |||| ||||||    
T  19050334 atcaccctacacatgtcctgctccatgcctaatcatacgccgcataacccggagttagttatggccaacgcaagcctatataagggtgaacttacttcac 19050433  T
Q  136 tctcggggtacattctcactttccacaacattttcttacacactctttgtcagttgcattaatgacttgagcgtcggtgtgctaacgtacctgcagacac 235  Q
    |||| |||||||   ||||||| ||||||| || ||||||| |||||| | ||||  |||| ||||||||||||| | |||||||||   ||||| | ||    
T  19050434 tctcagggtacaca-tcacttttcacaacactt-cttacactctctttcttagttctattactgacttgagcgtcagagtgctaacgggtctgcaaatac 19050531  T
Q  236 ctttcgttccactgcgatgactcatcg 262  Q
    |||||||||||| ||||  ||||||||    
T  19050532 ctttcgttccaccgcgaacactcatcg 19050558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 151 - 265
Target Start/End: Complemental strand, 36267576 - 36267463
Alignment:
Q  151 tcactttccacaacattttcttacacactctttgtcagttgcattaatgacttgagcgtcggtgtgctaacgtacctgcagacacctttcgttccactgc 250  Q
    ||||||| ||||||  ||||| ||||||||||| |||||| ||||| |||||||||||| || ||| |||| | | ||||| |||||||| |||||||||    
T  36267576 tcacttttcacaaccctttct-acacactctttctcagtttcattactgacttgagcgttggagtgttaacatgcatgcaggcacctttcattccactgc 36267478  T
Q  251 gatgactcatcgtcg 265  Q
    || ||||||||||||    
T  36267477 gaagactcatcgtcg 36267463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 94 - 294
Target Start/End: Complemental strand, 3586497 - 3586299
Alignment:
Q  94 ttatgatcaacgcgtgcctatatagaggtggacttgcttcactctcggggtacattctcactttccacaacattttcttacacactctttgtcagttgca 193  Q
    |||||| ||||||| |||||||||  |||| ||||||||||| |||  ||||   | ||||||| ||||||| ||||| || |||| ||| |||||| ||    
T  3586497 ttatgaccaacgcgcgcctatataagggtgaacttgcttcaccctcaaggtatgat-tcacttttcacaacactttct-actcactttttctcagttcca 3586400  T
Q  194 ttaatgacttgagcgtcggtgtgctaacgtacctgcagacacctttcgttccactgcgatgactcatcgtcgctgtgccggaagccgttaccatcacacc 293  Q
    ||| ||||||||||||||| || ||||||| || |||  |||||||| |||||| || | |||||| |||||| || |||||| || | ||| |||||||    
T  3586399 ttactgacttgagcgtcggagtcctaacgtgccggcatgcacctttcattccaccgcaaagactcaacgtcgccgtaccggaaaccttcaccgtcacacc 3586300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 171 - 247
Target Start/End: Complemental strand, 45715054 - 45714978
Alignment:
Q  171 ttacacactctttgtcagttgcattaatgacttgagcgtcggtgtgctaacgtacctgcagacacctttcgttccac 247  Q
    ||||||||||||| |||||| ||||| |||||||||||| || |||||||||| ||||||  |||||||||||||||    
T  45715054 ttacacactctttctcagtttcattactgacttgagcgttggagtgctaacgtgcctgcatgcacctttcgttccac 45714978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 151 - 242
Target Start/End: Complemental strand, 24499867 - 24499777
Alignment:
Q  151 tcactttccacaacattttcttacacactctttgtcagttgcattaatgacttgagcgtcggtgtgctaacgtacctgcagacacctttcgt 242  Q
    ||||||| ||||||||||||| ||||||||||| ||| || ||||| |||||||||||| || |||||||||| |||  || ||||||||||    
T  24499867 tcacttttcacaacattttct-acacactctttctcatttccattactgacttgagcgttggagtgctaacgttcctagaggcacctttcgt 24499777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 31 - 257
Target Start/End: Original strand, 10923059 - 10923283
Alignment:
Q  31 cgagaatcaccctacacgtgtactactccgcccctaatcacacgcagcataactcggagatgattatgatcaacgcgtgcctatatagaggtggacttgc 130  Q
    |||| |||||||||||||||| ||  |||| | |||||||||||| ||||||  || |||   |||||| |||| |  |  ||||||  |||| ||||||    
T  10923059 cgaggatcaccctacacgtgtcctcttccgtctctaatcacacgccgcataagccgaagactgttatgaccaacacacgtgtatataagggtgaacttgc 10923158  T
Q  131 ttcactctcggggtacattctcactttccacaacattttcttacacactctttgtcagttgcattaatgacttgagcgtcggtgtgctaacgtacctgca 230  Q
    ||||| |||  || ||| | ||||||| |||| || ||||| ||||||||||| | |||| ||| | ||||||||| ||||| ||| |||||| ||| ||    
T  10923159 ttcaccctcaaggcacact-tcacttttcacagcactttct-acacactctttataagttccataactgacttgagtgtcggagtgataacgtgcctaca 10923256  T
Q  231 gacacctttcgttccactgcgatgact 257  Q
     |||||||||||||||| |||| ||||    
T  10923257 tacacctttcgttccaccgcgaagact 10923283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 151 - 247
Target Start/End: Complemental strand, 12169051 - 12168955
Alignment:
Q  151 tcactttccacaacattttcttacacactctttgtcagttgcattaatgacttga-gcgtcggtgtgctaacgtacctgcagacacctttcgttccac 247  Q
    ||||||| ||||||| ||||| ||||||||||| | |||| ||||| |||||||| |||| || ||| ||| || |||||||||||||||||||||||    
T  12169051 tcacttttcacaacactttct-acacactctttcttagttccattactgacttgaagcgttggagtgttaatgtgcctgcagacacctttcgttccac 12168955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 151 - 262
Target Start/End: Original strand, 45258165 - 45258275
Alignment:
Q  151 tcactttccacaacattttcttacacactctttgtcagttgcattaatgacttgagcgtcggtgtgctaacgtacctgcagacacctttcgttccactgc 250  Q
    ||||||| ||||||| ||||  ||||| ||||| | |||| ||||| | |||||||| | || ||| |||||| |||||||||| |||||||||||| ||    
T  45258165 tcacttttcacaacactttcg-acacattctttcttagtttcattacttacttgagctttggagtgttaacgtgcctgcagacatctttcgttccaccgc 45258263  T
Q  251 gatgactcatcg 262  Q
    || |||||||||    
T  45258264 gaagactcatcg 45258275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 151 - 261
Target Start/End: Original strand, 12127676 - 12127785
Alignment:
Q  151 tcactttccacaacattttcttacacactctttgtcagttgcattaatgacttgagcgtcggtgtgctaacgtacctgcagacacctttcgttccactgc 250  Q
    ||||||| ||||||| ||||| |||||| | || | |||| ||||| |||||||||||| || |||||||||| |||||||  ||||||||| |||| ||    
T  12127676 tcacttttcacaacactttct-acacacacgttcttagtttcattactgacttgagcgttggagtgctaacgtgcctgcaggtacctttcgtcccaccgc 12127774  T
Q  251 gatgactcatc 261  Q
    || ||| ||||    
T  12127775 gaagacccatc 12127785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 168 - 294
Target Start/End: Complemental strand, 18135933 - 18135807
Alignment:
Q  168 ttcttacacactctttgtcagttgcattaatgacttgagcgtcggtgtgctaacgtacctgcagacacctttcgttccactgcgatgactcatcgtcgct 267  Q
    |||||||||||||||| |||||| ||||| | ||||||||||| | || ||||||| ||| ||| |||||||| | |||| | || |||||| || |||     
T  18135933 ttcttacacactctttctcagttccattactaacttgagcgtcagagtactaacgtgcctacaggcacctttcatcccaccgtgaagactcaacgccgcc 18135834  T
Q  268 gtgccggaagccgttaccatcacaccg 294  Q
    |  ||| |||  |||||||||||||||    
T  18135833 gcaccgaaagtggttaccatcacaccg 18135807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 151 - 246
Target Start/End: Complemental strand, 18770392 - 18770296
Alignment:
Q  151 tcactttccacaacattttcttacacactctttgtcagttgcattaatgacttgagcgtcggtgtgctaacgtacc--tgcagacacctttcgttcca 246  Q
    ||||||| ||||||| ||||| ||||||||||| ||| || ||||| ||||||||||||| | |||||||||| ||  || || ||||||||||||||    
T  18770392 tcacttttcacaacactttct-acacactctttctcaatttcattactgacttgagcgtcagagtgctaacgtgcctatgtaggcacctttcgttcca 18770296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 185 - 246
Target Start/End: Original strand, 24157352 - 24157413
Alignment:
Q  185 tcagttgcattaatgacttgagcgtcggtgtgctaacgtacctgcagacacctttcgttcca 246  Q
    |||||| ||||| ||||||||||||| | |||||||||| | || || ||||||||||||||    
T  24157352 tcagttccattactgacttgagcgtcagagtgctaacgtgcatgtaggcacctttcgttcca 24157413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 97; Significance: 1e-47; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 27 - 311
Target Start/End: Original strand, 13292013 - 13292295
Alignment:
Q  27 cgcgcgagaatcaccctacacgtgtactactccgcccctaatcacacgcagcataactcggagatgattatgatcaacgcgtgcctatatagaggtggac 126  Q
    ||||| || ||||||||||||||||  | ||||| |||||| ||||||| ||||||| |||||| | |||||  ||||||| |||||||||  |||| ||    
T  13292013 cgcgcaaggatcaccctacacgtgtcatgctccgtccctaaccacacgccgcataacccggagacggttatggccaacgcgcgcctatataatggtgaac 13292112  T
Q  127 ttgcttcactctcggggtacattctcactttccacaacattttcttacacactctttgtcagttgcattaatgacttgagcgtcggtgtgctaacgtacc 226  Q
    ||||||||| |||  ||||||   ||||||| ||||||| || |||||||||||||| |||||| ||||| ||||||||||||  | |||||||||||||    
T  13292113 ttgcttcaccctcaaggtacaca-tcacttttcacaacactt-cttacacactctttttcagtttcattactgacttgagcgttagagtgctaacgtacc 13292210  T
Q  227 tgcagacacctttcgttccactgcgatgactcatcgtcgctgtgccggaagccgttaccatcacaccgaaacattctctgtcgcc 311  Q
    |||||||||||||| ||||||  ||| ||||||||| ||| ||||||||| | |||||| ||||| || | ||||||||| ||||    
T  13292211 tgcagacacctttccttccaccacgaagactcatcgccgccgtgccggaaactgttaccgtcacatcggagcattctctgccgcc 13292295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 36 - 306
Target Start/End: Original strand, 16986991 - 16987259
Alignment:
Q  36 atcaccctacacgtgtactactccgcccctaatcacacgcagcataactcggagatgattatgatcaacgcgtgcctatatagaggtggacttgcttcac 135  Q
    |||||||| ||||||| || ||||  |||||||||||| | ||||||  |||||| | |||||  ||||||| |||||||||  |||| |||||||||||    
T  16986991 atcaccctgcacgtgtcctgctccatccctaatcacacaccgcataatccggagacggttatggccaacgcgcgcctatataagggtgaacttgcttcac 16987090  T
Q  136 tctcggggtacattctcactttccacaacattttcttacacactctttgtcagttgcattaatgacttgagcgtcggtgtgctaacgtacctgcagacac 235  Q
      |   || |||   ||||||| ||||||| || |||||||||||||| ||| || ||||| || |||||| ||| | |||||||||| || |||  |||    
T  16987091 ctttaagggacaca-tcacttttcacaacactt-cttacacactctttctcaattccattactggcttgagtgtcagagtgctaacgtgcccgcatgcac 16987188  T
Q  236 ctttcgttccactgcgatgactcatcgtcgctgtgccggaagccgttaccatcacaccgaaacattctctg 306  Q
    |||||||||||| |||| ||||||| | ||| || || |||||||||| | |||||||| | |||||||||    
T  16987189 ctttcgttccaccgcgaagactcattgccgccgtaccagaagccgttagcgtcacaccggagcattctctg 16987259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 151 - 309
Target Start/End: Original strand, 9867952 - 9868109
Alignment:
Q  151 tcactttccacaacattttcttacacactctttgtcagttgcattaatgacttgagcgtcggtgtgctaacgtacctgcagacacctttcgttccactgc 250  Q
    |||||||  |||||| ||||| ||| ||||||  |||||| ||||| ||||||||||||| | |||||||||| ||||||  |||||||||| |||| ||    
T  9867952 tcacttttaacaacactttct-acaaactcttcctcagttccattactgacttgagcgtcagagtgctaacgttcctgcatgcacctttcgtcccaccgc 9868050  T
Q  251 gatgactcatcgtcgctgtgccggaagccgttaccatcacaccgaaacattctctgtcg 309  Q
    || ||||| ||| ||| || | ||||||||||||| ||||| |||| |||| |||||||    
T  9868051 gaagactcgtcgccgccgttctggaagccgttaccgtcacatcgaagcattatctgtcg 9868109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 24 - 301
Target Start/End: Original strand, 9135248 - 9135523
Alignment:
Q  24 ccccgcgcgagaatcaccctacacgtgtactactccgcccctaatcacacgcagcataactcggagatgattatgatcaacgcgtgcctatatagaggtg 123  Q
    |||||| |||| |||||| |||| |||| || ||||| ||||||||||||||  |||||| |||||| | |||||| |||  |||| |||||||  ||||    
T  9135248 ccccgcacgaggatcaccttacatgtgtcctcctccgtccctaatcacacgctacataacccggagacggttatgaccaatacgtgtctatataagggtg 9135347  T
Q  124 gacttgcttcactctcggggtacattctcactttccacaacattttcttacacactctttgtcagttgcattaatgacttgagcgtcggtgtgctaacgt 223  Q
     | ||||||||| |||  ||||   | ||||||| ||||||| ||| ||||||||||||| ||| || ||||| ||||||||||||  | ||||||||||    
T  9135348 aatttgcttcaccctcaaggtatgat-tcacttttcacaacagttt-ttacacactctttctcaattccattactgacttgagcgttagagtgctaacgt 9135445  T
Q  224 acctgcagacacctttcgttccactgcgatgactcatcgtcgctgtgccggaagccgttaccatcacaccgaaacatt 301  Q
     |||  |  ||||||||||||||| | || |||| | |  ||| || | |||| |||||||| |||||||||| ||||    
T  9135446 gcctatatgcacctttcgttccaccgtgaagacttaacaccgccgtactggaaaccgttaccgtcacaccgaagcatt 9135523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 94 - 247
Target Start/End: Complemental strand, 34854377 - 34854226
Alignment:
Q  94 ttatgatcaacgcgtgcctatatagaggtggacttgcttcactctcggggtacattctcactttccacaacattttcttacacactctttgtcagttgca 193  Q
    |||||| ||||| | |||||||||  |||| ||||| ||||| ||| | |||||   ||||||| |||||||||| |||||||||||||| |||||| ||    
T  34854377 ttatgaccaacgagggcctatataagggtgaacttgtttcaccctcagagtacaca-tcacttttcacaacattt-cttacacactctttctcagtttca 34854280  T
Q  194 ttaatgacttgagcgtcggtgtgctaacgtacctgcagacacctttcgttccac 247  Q
    ||| | ||||||||||| | ||||||||||  ||||| ||||| ||||||||||    
T  34854279 ttactaacttgagcgtcagagtgctaacgtgtctgcaaacaccgttcgttccac 34854226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 151 - 261
Target Start/End: Complemental strand, 21161319 - 21161211
Alignment:
Q  151 tcactttccacaacattttcttacacactctttgtcagttgcattaatgacttgagcgtcggtgtgctaacgtacctgcagacacctttcgttccactgc 250  Q
    ||||||| ||||||| ||||| |||||| |||| | || | ||||| |||||||||||| || |||||||||| |||||||||| |||||||||||| ||    
T  21161319 tcacttttcacaacactttct-acacacactttcttagctccattactgacttgagcgttggagtgctaacgtgcctgcagaca-ctttcgttccaccgc 21161222  T
Q  251 gatgactcatc 261  Q
    || ||||||||    
T  21161221 gaagactcatc 21161211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 173 - 265
Target Start/End: Complemental strand, 12644842 - 12644750
Alignment:
Q  173 acacactctttgtcagttgcattaatgacttgagcgtcggtgtgctaacgtacctgcagacacctttcgttccactgcgatgactcatcgtcg 265  Q
    ||||||| ||| |||||| ||||| |||| |||||||||| |||||||| | ||||||  ||||||||||||||| | || ||||||||||||    
T  12644842 acacactttttctcagttccattactgacctgagcgtcggagtgctaacttgcctgcatgcacctttcgttccaccgtgaagactcatcgtcg 12644750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 185 - 247
Target Start/End: Original strand, 5925521 - 5925583
Alignment:
Q  185 tcagttgcattaatgacttgagcgtcggtgtgctaacgtacctgcagacacctttcgttccac 247  Q
    |||||| ||||| |||||||| ||| || |||||||||| |||||||||||||||||||||||    
T  5925521 tcagttccattactgacttgatcgttggagtgctaacgtgcctgcagacacctttcgttccac 5925583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 171 - 247
Target Start/End: Complemental strand, 39879446 - 39879370
Alignment:
Q  171 ttacacactctttgtcagttgcattaatgacttgagcgtcggtgtgctaacgtacctgcagacacctttcgttccac 247  Q
    ||||||||||||| |||||| ||||| ||||||||||||    ||| ||||||  |||||| |||||||||||||||    
T  39879446 ttacacactctttctcagtttcattactgacttgagcgttaaagtgttaacgtgtctgcaggcacctttcgttccac 39879370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 149 - 247
Target Start/End: Original strand, 10287607 - 10287704
Alignment:
Q  149 tctcactttccacaacattttcttacacactctttgtcagttgcattaatgacttgagcgtcggtgtgctaacgtacctgcagacacctttcgttccac 247  Q
    ||||||||| ||||||| || |||||||||| ||| |||| | ||||| ||||||||||||    |||||||||| |||||||  |||||| |||||||    
T  10287607 tctcacttttcacaacactt-cttacacactttttctcagatccattactgacttgagcgttaaggtgctaacgtgcctgcaggaacctttggttccac 10287704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 151 - 292
Target Start/End: Complemental strand, 5863265 - 5863125
Alignment:
Q  151 tcactttccacaacattttcttacacactctttgtcagttgcattaatgacttgagcgtcggtgtgctaacgtacctgcagacacctttcgttccactgc 250  Q
    |||||||  |||||||||||| ||||||||||| ||||||  |||| ||||||||||||  | |||||||||| | ||||  ||  |||||||| || |     
T  5863265 tcactttttacaacattttct-acacactctttctcagttcgattactgacttgagcgtttgagtgctaacgtgcttgcacgcaaatttcgttctaccgt 5863167  T
Q  251 gatgactcatcgtcgctgtgccggaagccgttaccatcacac 292  Q
    || |||||||||   | || ||| || |||||||||||||||    
T  5863166 gaagactcatcgctaccgtaccgaaaaccgttaccatcacac 5863125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 62 - 247
Target Start/End: Original strand, 26762836 - 26763019
Alignment:
Q  62 ccctaatcacacgcagcataactcggagatgattatgatcaacgcgtgcctatatagaggtggacttgcttcactctcggggtacattctcactttccac 161  Q
    ||||||||||||||  || ||| ||||| || |||| | |||| || |||||||||  ||||  |||||||||| |||  ||||   | ||||||| |||    
T  26762836 ccctaatcacacgccccaaaacccggaggtggttatcaacaacacgcgcctatatatgggtgtccttgcttcaccctcaaggtatgat-tcacttttcac 26762934  T
Q  162 aacattttcttacacactctttgtcagttgcattaatgacttgagcgtcggtgtgctaacgtacctgcagacacctttcgttccac 247  Q
    |||| ||||| ||||||| ||| | |||| | ||| |||||||||||| || |||||||||| ||||||   |||||||| |||||    
T  26762935 aacactttct-acacactatttatgagttcctttactgacttgagcgttggagtgctaacgtgcctgcaagaacctttcgctccac 26763019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 168 - 236
Target Start/End: Original strand, 9573455 - 9573523
Alignment:
Q  168 ttcttacacactctttgtcagttgcattaatgacttgagcgtcggtgtgctaacgtacctgcagacacc 236  Q
    |||||||||||||||| |||||| |  || ||||||| |||| || |||||||||| ||||||| ||||    
T  9573455 ttcttacacactctttctcagttcccatattgacttgtgcgttggagtgctaacgtgcctgcaggcacc 9573523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 79; Significance: 6e-37; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 36 - 306
Target Start/End: Complemental strand, 379908 - 379640
Alignment:
Q  36 atcaccctacacgtgtactactccgcccctaatcacacgcagcataactcggagatgattatgatcaacgcgtgcctatatagaggtggacttgcttcac 135  Q
    |||||||||||||||| || ||||| || ||||||||||| |||||| || |||||| |||||| ||||  | |||||||||  |||| |||||||||||    
T  379908 atcaccctacacgtgtcctgctccgtccataatcacacgccgcataattcagagatggttatgaccaacatgcgcctatatacgggtgaacttgcttcac 379809  T
Q  136 tctcggggtacattctcactttccacaacattttcttacacactctttgtcagttgcattaatgacttgagcgtcggtgtgctaacgtacctgcagacac 235  Q
     |||  ||||||   ||||||| ||||||| || |||||||||||||| |||||| ||||| |||||| || |||   |||||||||| |||  |  |||    
T  379808 cctcaaggtacaca-tcacttttcacaacactt-cttacacactctttctcagttccattactgacttcagtgtcaaagtgctaacgtgcctagatgcac 379711  T
Q  236 ctttcgttccactgcgatgactcatcgtcgctgtgccggaagccgttaccatcacaccgaaacattctctg 306  Q
    |||||||||||| |||| ||||||||||||| || |||||||| |||||  |||||||| | |||||||||    
T  379710 ctttcgttccaccgcgaagactcatcgtcgccgtaccggaagctgttacagtcacaccggagcattctctg 379640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 75; Significance: 2e-34; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 27 - 293
Target Start/End: Original strand, 12449473 - 12449737
Alignment:
Q  27 cgcgcgagaatcaccctacacgtgtactactccgcccctaatcacacgcagcataactcggagatgattatgatcaacgcgtgcctatatagaggtggac 126  Q
    ||||| || ||||||||| |||||  ||||||||||||||||||||| | |||||||  |||||   |||||| ||||||| |||||||||  |||  ||    
T  12449473 cgcgcaaggatcaccctagacgtggcctactccgcccctaatcacacactgcataacctggagacagttatgaccaacgcgcgcctatataagggtaaac 12449572  T
Q  127 ttgcttcactctcggggtacattctcactttccacaacattttcttacacactctttgtcagttgcattaatgacttgagcgtcggtgtgctaacgtacc 226  Q
    ||| ||||| |||  ||||||   ||||||||||||||| || |||||||||||||| |||| | ||||| ||||||||||||| | |||||||||| ||    
T  12449573 ttgattcaccctcaaggtacaca-tcactttccacaacactt-cttacacactctttttcagctccattactgacttgagcgtcagagtgctaacgtgcc 12449670  T
Q  227 tgcagacacctttcgttccactgcgatgactcatcgtcgctgtgccggaagccgttaccatcacacc 293  Q
    | |||||||||||||| ||||  ||| ||||||||  ||| |||||| ||| ||||||  |||||||    
T  12449671 tacagacacctttcgtcccaccacgaagactcatcaccgcggtgccgaaagtcgttactgtcacacc 12449737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 36 - 266
Target Start/End: Original strand, 31295434 - 31295662
Alignment:
Q  36 atcaccctacacgtgtactactccgcccctaatcacacgcagcataactcggagatgattatgatcaacgcgtgcctatatagaggtggacttgcttcac 135  Q
    ||||||||||||||||  | |||||  |||||||||||| |||||||| || ||| | |||||  |||| |  |||||| ||  |||| |||||||||||    
T  31295434 atcaccctacacgtgtcttgctccgttcctaatcacacgaagcataacccgaagacggttatggccaacccccgcctatgtaagggtgaacttgcttcac 31295533  T
Q  136 tctcggggtacattctcactttccacaacattttcttacacactctttgtcagttgcattaatgacttgagcgtcggtgtgctaacgtacctgcagacac 235  Q
     |||| |||||||  ||||||| ||||||| || | |||||||||||| |||||| ||||| ||||||||||||||  |||||||| | ||||||| ||     
T  31295534 cctcgaggtacata-tcacttttcacaacactt-catacacactctttctcagtttcattactgacttgagcgtcgaagtgctaacatgcctgcaggcaa 31295631  T
Q  236 ctttcgttccactgcgatgactcatcgtcgc 266  Q
    ||||||||||||  ||| ||||| |||||||    
T  31295632 ctttcgttccacctcgaagactcgtcgtcgc 31295662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 27 - 244
Target Start/End: Complemental strand, 34064396 - 34064181
Alignment:
Q  27 cgcgcgagaatcaccctacacgtgtactactccgcccctaatcacacgcagcataactcggagatgattatgatcaacgcgtgcctatatagaggtggac 126  Q
    ||||| || |||||| |||| |||| ||||| |||||||||||||  || ||||||| ||| || | |||||  |||| || |||||||||  |||| ||    
T  34064396 cgcgcaaggatcaccatacatgtgtcctacttcgcccctaatcacgtgccgcataacccggtgacggttatggccaactcgcgcctatataagggtgaac 34064297  T
Q  127 ttgcttcactctcggggtacattctcactttccacaacattttcttacacactctttgtcagttgcattaatgacttgagcgtcggtgtgctaacgtacc 226  Q
    ||||||||| |||  ||||||   ||||||| ||||||| || |||||||||||||| | |||| ||||| |||||||| ||||   ||| |||||| ||    
T  34064296 ttgcttcaccctcaaggtacaca-tcacttttcacaacactt-cttacacactctttcttagtttcattactgacttgaacgtcatagtgttaacgtgcc 34064199  T
Q  227 tgcagacacctttcgttc 244  Q
    |||| |||||||||||||    
T  34064198 tgcacacacctttcgttc 34064181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 171 - 247
Target Start/End: Complemental strand, 34187358 - 34187282
Alignment:
Q  171 ttacacactctttgtcagttgcattaatgacttgagcgtcggtgtgctaacgtacctgcagacacctttcgttccac 247  Q
    ||||||||||||| |||||| ||||| ||||||||| || |||||||||||||  ||||||||||||||||||||||    
T  34187358 ttacacactctttctcagttccattactgacttgagtgttggtgtgctaacgtgtctgcagacacctttcgttccac 34187282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 101 - 294
Target Start/End: Complemental strand, 9403299 - 9403113
Alignment:
Q  101 caacgcgtgcctatatagaggtggacttgcttcactctcggggtacattctcactttccacaacattttcttacacactctttgtcagttgcattaatga 200  Q
    |||||||  ||||||||  |||| ||||||||||| |||  ||||||   ||||||||||||||| || |||||||||||||| |||||| ||||| |||    
T  9403299 caacgcgcacctatataagggtgaacttgcttcaccctcaaggtacaca-tcactttccacaacactt-cttacacactctttctcagttccattattga 9403202  T
Q  201 cttgagcgtcggtgtgctaacgtacctgcagacacctttcgttccactgcgatgactcatcgtcgctgtgccggaagccgttaccatcacaccg 294  Q
    |||||||||||| || ||||||| |||||     | |||| ||||||  |||||||||||||  ||  || | |||||||||||| ||||||||    
T  9403201 cttgagcgtcggagttctaacgtgcctgc-----cgtttcattccaccacgatgactcatcgctgccatgtcagaagccgttaccgtcacaccg 9403113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 31 - 244
Target Start/End: Complemental strand, 18566854 - 18566643
Alignment:
Q  31 cgagaatcaccctacacgtgtactactccgcccctaatcacacgcagcataactcggagatgattatgatcaacgcgtgcctatatagaggtggacttgc 130  Q
    |||| |||||| ||||||||| ||   ||| | |||||||||||| |||||||   |||| || ||||| |||| || ||||||||||||||| ||||||    
T  18566854 cgaggatcaccttacacgtgtcctctaccgtcgctaatcacacgccgcataacctagagacgagtatgaccaacccgcgcctatatagaggtgaacttgc 18566755  T
Q  131 ttcactctcggggtacattctcactttccacaacattttcttacacactctttgtcagttgcattaatgacttgagcgtcggtgtgctaacgtacctgca 230  Q
     |||| |||  |||| | | |||||||  |||||  |||| |||||| ||||| |||||| ||||| |||||  ||  ||| ||||||||||||||||||    
T  18566754 ctcaccctcaaggtagact-tcactttttacaacgctttc-tacacaatctttctcagttccattactgactccagtctcgttgtgctaacgtacctgca 18566657  T
Q  231 gacacctttcgttc 244  Q
    ||||||||| ||||    
T  18566656 gacaccttttgttc 18566643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 36 - 262
Target Start/End: Original strand, 22497197 - 22497421
Alignment:
Q  36 atcaccctacacgtgtactactccgcccctaatcacacgcagcataactcggagatgattatgatcaacgcgtgcctatatagaggtggacttgcttcac 135  Q
    ||||| |||||||||  || |||||||||||||||||||  ||||||| | |||||| |||||      ||||| |||||||  |||| |||||||||||    
T  22497197 atcacgctacacgtgcccttctccgcccctaatcacacgtcgcataacccagagatggttatgccatgagcgtgtctatatatgggtgaacttgcttcac 22497296  T
Q  136 tctcggggtacattctcactttccacaacattttcttacacactctttgtcagttgcattaatgacttgagcgtcggtgtgctaacgtacctgcagacac 235  Q
     |||  ||||||    |||||| ||||||| ||| ||| || |||| | || ||| ||||| ||||||||||||||| ||||||||||  |||||  |||    
T  22497297 cctcaaggtacacaa-cacttttcacaacacttt-ttatactctctctttctgttccattactgacttgagcgtcggagtgctaacgtgtctgcaagcac 22497394  T
Q  236 ctttcgttccactgcgatgactcatcg 262  Q
    |||||||||||  |||| |||||||||    
T  22497395 ctttcgttccatcgcgaagactcatcg 22497421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 151 - 264
Target Start/End: Complemental strand, 18147384 - 18147272
Alignment:
Q  151 tcactttccacaacattttcttacacactctttgtcagttgcattaatgacttgagcgtcggtgtgctaacgtacctgcagacacctttcgttccactgc 250  Q
    ||||||| ||||||| ||||| ||||||||||| || ||| ||||| |||||||||||| || ||| |||||| ||| ||| ||||||||||| ||| |     
T  18147384 tcacttttcacaacactttct-acacactctttctcggttccattagtgacttgagcgttggagtgttaacgttcctacaggcacctttcgtttcaccga 18147286  T
Q  251 gatgactcatcgtc 264  Q
    || |||||||||||    
T  18147285 gaagactcatcgtc 18147272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 172 - 261
Target Start/End: Complemental strand, 30681050 - 30680961
Alignment:
Q  172 tacacactctttgtcagttgcattaatgacttgagcgtcggtgtgctaacgtacctgcagacacctttcgttccactgcgatgactcatc 261  Q
    ||||| |||||| |||||| ||||| |||||||||||| || ||||||||||   |||||||||||||||| |||| |||| ||||||||    
T  30681050 tacacgctctttatcagtttcattactgacttgagcgttggagtgctaacgtgattgcagacacctttcgtcccaccgcgaagactcatc 30680961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 153 - 258
Target Start/End: Original strand, 19331695 - 19331799
Alignment:
Q  153 actttccacaacattttcttacacactctttgtcagttgcattaatgacttgagcgtcggtgtgctaacgtacctgcagacacctttcgttccactgcga 252  Q
    ||||| ||||||| ||||| | || |||||| | |||| ||||| |||||| |||||||| || ||||||||||||||  ||||||||||||||| ||||    
T  19331695 actttacacaacactttct-atactctctttcttagttccattactgacttaagcgtcggagtactaacgtacctgcaagcacctttcgttccaccgcga 19331793  T
Q  253 tgactc 258  Q
     |||||    
T  19331794 agactc 19331799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 58 - 247
Target Start/End: Original strand, 27860869 - 27861056
Alignment:
Q  58 ccgcccctaatcacacgcagcataactcggagatgattatgatcaacgcgtgcctatatagaggtggacttgcttcactctcggggtacattctcacttt 157  Q
    |||| ||||||||||||| ||||||| |||||| | |||||  |||| || ||||||| |  |||| ||||||||||| |||   |||||   |||||||    
T  27860869 ccgctcctaatcacacgccgcataacccggagacggttatggccaacacgcgcctataaaagggtgaacttgcttcaccctcaaagtacaca-tcacttt 27860967  T
Q  158 ccacaacattttcttacacactctttgtcagttgcattaatgacttgagcgtcggtgtgctaacgtacctgcagacacctttcgttccac 247  Q
     ||||||| || ||||||| |||| | |||||| ||||| ||||||||| ||  | || ||||| | ||||||||||||||| |||||||    
T  27860968 tcacaacactt-cttacactctctctttcagttccattactgacttgagtgttagagtactaacatgcctgcagacaccttttgttccac 27861056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 65 - 240
Target Start/End: Original strand, 689786 - 689958
Alignment:
Q  65 taatcacacgcagcataactcggagatgattatgatcaacgcgtgcctatatagaggtggacttgcttcactctcggggtacattctcactttccacaac 164  Q
    ||||||||||| ||| |||||||||| |||||||||||||| | |||||||||  ||||  ||||  |||  |||  |||||  | ||||||| ||||||    
T  689786 taatcacacgccgcaaaactcggagacgattatgatcaacgtgcgcctatataagggtgaccttg-atcagcctcaaggtacgat-tcacttttcacaac 689883  T
Q  165 attttcttacacactctttgtcagttgcattaatgacttgagcgtcggtgtgctaacgtacctgcagacacctttc 240  Q
    | |||  ||||||| |||| |||||| ||||| |||||||||| | |  ||||||| ||||||||| |||||||||    
T  689884 acttt-atacacacactttctcagttccattactgacttgagcattgcagtgctaatgtacctgcaaacacctttc 689958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 56 - 317
Target Start/End: Original strand, 19276996 - 19277260
Alignment:
Q  56 ctccgcccctaatcacacgcagcataactcggagatgattatgatcaacgcgtgcctatatagaggtggacttgcttcactctcggggtacattctcact 155  Q
    |||||| |||||||| |||| ||||||| | |||| | |||||| ||| ||| |||||||||  |||| ||||||||||| |||  ||||||   |||||    
T  19276996 ctccgctcctaatcatacgccgcataac-cagagacggttatgaccaaagcgcgcctatataagggtgaacttgcttcaccctcaaggtaca-catcact 19277093  T
Q  156 ttccacaacattttcttacacactctttgtcagttgcattaat-------gacttgagcgtcggtgtgctaacgtacctgcagacacctttcgttccact 248  Q
    || |||||||  |||||||||||||||| ||| || ||||| |       |||||||||||||| || ||| | |  |||||| ||||||| |||||||     
T  19277094 tttcacaaca-cttcttacacactctttctcatttccattactcacgagcgacttgagcgtcggagttctagc-tgtctgcaggcaccttttgttccacc 19277191  T
Q  249 gcgatgactcatcgtcgctgtgccggaagccgttaccatcacaccgaaacattctctgtcgcctttgct 317  Q
    |  | ||||||||| ||| || |||||| |||||||| ||||| |||| ||||||| | |||| |||||    
T  19277192 ggaaagactcatcgccgccgtaccggaaaccgttaccgtcacatcgaagcattctcagccgccgttgct 19277260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 168 - 230
Target Start/End: Original strand, 19730620 - 19730682
Alignment:
Q  168 ttcttacacactctttgtcagttgcattaatgacttgagcgtcggtgtgctaacgtacctgca 230  Q
    |||||||||||||||| |||||| ||||| |||||||||||| || |||||||| | ||||||    
T  19730620 ttcttacacactctttctcagttccattattgacttgagcgttggagtgctaacatgcctgca 19730682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 185 - 250
Target Start/End: Original strand, 12424360 - 12424425
Alignment:
Q  185 tcagttgcattaatgacttgagcgtcggtgtgctaacgtacctgcagacacctttcgttccactgc 250  Q
    |||||| ||||| ||||||||  ||||  |||||||||| ||||||| ||||||||||||||||||    
T  12424360 tcagttccattactgacttgattgtcgtagtgctaacgtgcctgcaggcacctttcgttccactgc 12424425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 171 - 247
Target Start/End: Original strand, 9292051 - 9292127
Alignment:
Q  171 ttacacactctttgtcagttgcattaatgacttgagcgtcggtgtgctaacgtacctgcagacacctttcgttccac 247  Q
    ||||| ||| ||| |||||| || || ||||||||||||  | |||||||||| | ||||| |||||||||||||||    
T  9292051 ttacatactatttctcagttccaatactgacttgagcgttagcgtgctaacgtgcttgcaggcacctttcgttccac 9292127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 151 - 247
Target Start/End: Complemental strand, 14080561 - 14080467
Alignment:
Q  151 tcactttccacaacattttcttacacactctttgtcagttgcattaatgacttgagcgtcggtgtgctaacgtacctgcagacacctttcgttccac 247  Q
    ||||||| ||||||| || || ||||||||||| |||||| ||||| | ||||||||||| | ||||||| || |||| || |||||||||| ||||    
T  14080561 tcacttttcacaacacttact-acacactctttctcagtt-cattactaacttgagcgtcagagtgctaatgtgcctgtaggcacctttcgtcccac 14080467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 151 - 247
Target Start/End: Complemental strand, 19305542 - 19305447
Alignment:
Q  151 tcactttccacaacattttcttacacactctttgtcagttgcattaatgacttgagcgtcggtgtgctaacgtacctgcagacacctttcgttccac 247  Q
    ||||||| ||||||| ||||| ||||||||||  |||||| ||||| ||||||||||||    |||||||||| |||  ||  ||||||||||||||    
T  19305542 tcacttttcacaacactttct-acacactcttactcagttccattactgacttgagcgtttaagtgctaacgtgcctctaggaacctttcgttccac 19305447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 75; Significance: 2e-34; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 27 - 317
Target Start/End: Complemental strand, 22865962 - 22865674
Alignment:
Q  27 cgcgcgagaatcaccctacacgtgtactactccgcccctaatcacacgcagcataactcggagatgattatgatcaacgcgtgcctatatagaggtggac 126  Q
    ||||| || ||||||||||||||||  | ||||| ||||||||||| |  ||||||  |||| | | |||||  ||||||  |||||||||  |||| ||    
T  22865962 cgcgcaaggatcaccctacacgtgtcatgctccgtccctaatcacaagtcgcataatccggaaacggttatggccaacgcacgcctatataagggtgaac 22865863  T
Q  127 ttgcttcactctcggggtacattctcactttccacaacattttcttacacactctttgtcagttgcattaatgacttgagcgtcggtgtgctaacgtacc 226  Q
    ||||||||| |||  ||||||   ||||||| |||||||||| |||||||||| ||| |||||| ||||| | |||||||||||   |||||||||||||    
T  22865862 ttgcttcaccctcaaggtacaca-tcacttttcacaacattt-cttacacactttttctcagttccattactaacttgagcgtcaaagtgctaacgtacc 22865765  T
Q  227 tgcagacacctttcgttccactgcgatgactcatcgtcgctgtgccggaagccgttaccatcacaccgaaacattctctgtcgcctttgct 317  Q
    ||||  |||||||||||||||||||| |||   ||| | | |||||| ||||||||||| |||||||| | ||||||||| |||| |||||    
T  22865764 tgcatgcacctttcgttccactgcgaagacatgtcgccaccgtgccgaaagccgttaccgtcacaccggagcattctctgccgccgttgct 22865674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 24 - 165
Target Start/End: Original strand, 31202262 - 31202403
Alignment:
Q  24 ccccgcgcgagaatcaccctacacgtgtactactccgcccctaatcacacgcagcataactcggagatgattatgatcaacgcgtgcctatatagaggtg 123  Q
    ||||||||||| || |||||||||||||  | |||| ||||||||||||||| |||||||   |||| | |||||| ||||| | |||||||||  ||||    
T  31202262 ccccgcgcgaggattaccctacacgtgtcttcctccacccctaatcacacgccgcataacctagagacggttatgaccaacgtgcgcctatataagggtg 31202361  T
Q  124 gacttgcttcactctcggggtacattctcactttccacaaca 165  Q
     ||||||||||| |||  |||||||| |||||||||||||||    
T  31202362 aacttgcttcaccctcaaggtacattatcactttccacaaca 31202403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 187 - 247
Target Start/End: Original strand, 26348127 - 26348187
Alignment:
Q  187 agttgcattaatgacttgagcgtcggtgtgctaacgtacctgcagacacctttcgttccac 247  Q
    |||| |||||||||||||||||| || |||||||||| |||||||||||||||||||||||    
T  26348127 agttccattaatgacttgagcgttggagtgctaacgtgcctgcagacacctttcgttccac 26348187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 151 - 293
Target Start/End: Complemental strand, 25537483 - 25537342
Alignment:
Q  151 tcactttccacaacattttcttacacactctttgtcagttgcattaatgacttgagcgtcggtgtgctaacgtacctgcagacacctttcgttccactgc 250  Q
    ||||||| ||||||| || | |||||| ||||| |||||| |||||    ||||||||| || |||||||||| | ||||| ||||||||||||||| ||    
T  25537483 tcacttttcacaacactt-catacacaatctttctcagttccattacaatcttgagcgttggagtgctaacgtgcttgcaggcacctttcgttccaccgc 25537385  T
Q  251 gatgactcatcgtcgctgtgccggaagccgttaccatcacacc 293  Q
    || ||||| ||| ||| ||||| ||| |||||||| |||||||    
T  25537384 gaagactcttcgccgccgtgccagaaaccgttaccgtcacacc 25537342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 26 - 247
Target Start/End: Complemental strand, 24546544 - 24546330
Alignment:
Q  26 ccgcgcgagaatcaccctacacgtgtactactccgcccctaatcacacgcagcataactcggagatgattatgatcaacgcgtgcctatatagaggtgga 125  Q
    |||||| || ||||||||||||||||  | ||||| |||||||||||||| ||||||| |||||| | |||||   |||||| |||||||||  |||| |    
T  24546544 ccgcgcaaggatcaccctacacgtgtcttgctccgtccctaatcacacgccgcataacccggagacggttatggctaacgcgcgcctatataagggtgaa 24546445  T
Q  126 c-ttgcttcactctcggggtacattctcactttccacaacattttcttacacactctttgtcagttgcattaatgacttgagcgtcggtgtgctaacgta 224  Q
    | |||||||||  ||  ||||||   ||||||| |||||||  |||||| ||||||    ||| || ||||| |||||| ||||| || || |||||||     
T  24546444 ctttgcttcaccttcaaggtaca-catcacttt-cacaaca-cttcttatacactc----tcaattccattactgactttagcgt-ggagttctaacgtg 24546353  T
Q  225 cctgcagacacctttcgttccac 247  Q
    |||||||||||||||||||||||    
T  24546352 cctgcagacacctttcgttccac 24546330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 62 - 250
Target Start/End: Original strand, 26994531 - 26994717
Alignment:
Q  62 ccctaatcacacgcagcataactcggagatgattatgatcaacgcgtgcctatatagaggtggacttgcttcactctcggggtacattctcactttccac 161  Q
    |||||||||||||| ||| |||||| ||| | |||   |||||||| |||||||||  ||||  |||||||||| | |  ||||   | ||||||| |||    
T  26994531 ccctaatcacacgccgcaaaactcgaagacggttactctcaacgcgcgcctatataagggtgaccttgcttcacccccaaggtatgat-tcacttttcac 26994629  T
Q  162 aacattttcttacacactctttgtcagttgcattaatgacttgagcgtcggtgtgctaacgtacctgcagacacctttcgttccactgc 250  Q
    ||||  |||| | ||||||||| ||| || ||||| ||||||||||||||| ||||||||||  ||| |||||||||| || |||||||    
T  26994630 aacaccttctaa-acactctttctcaattccattactgacttgagcgtcggagtgctaacgtgtctgaagacaccttttgtcccactgc 26994717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 27 - 90
Target Start/End: Original strand, 25828878 - 25828941
Alignment:
Q  27 cgcgcgagaatcaccctacacgtgtactactccgcccctaatcacacgcagcataactcggaga 90  Q
    ||||| || ||| |||||||||||| ||| ||||||||||||||||||| ||||||| ||||||    
T  25828878 cgcgcaaggatcgccctacacgtgtcctattccgcccctaatcacacgccgcataacccggaga 25828941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 151 - 261
Target Start/End: Complemental strand, 22903171 - 22903062
Alignment:
Q  151 tcactttccacaacattttcttacacactctttgtcagttgcattaatgacttgagcgtcggtgtgctaacgtacctgcagacacctttcgttccactgc 250  Q
    ||||||| ||||||| ||||| ||||||||||| |||||| ||||| |||||||||||| |  |||||||| | ||| |  | |||||||||||||| ||    
T  22903171 tcacttttcacaacactttct-acacactctttctcagttccattactgacttgagcgttgaagtgctaacatgcctacgaaaacctttcgttccaccgc 22903073  T
Q  251 gatgactcatc 261  Q
    ||  |||||||    
T  22903072 gaaaactcatc 22903062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 185 - 306
Target Start/End: Original strand, 31202474 - 31202595
Alignment:
Q  185 tcagttgcattaatgacttgagcgtcggtgtgctaacgtacctgcagacacctttcgttccactgcgatgactcatcgtcgctgtgccggaagccgttac 284  Q
    |||||| || || |||||||||||||||  ||||||||| |||| || ||| ||  ||||||| |||| ||||||||| ||| ||| | |||| ||||||    
T  31202474 tcagttccaatactgacttgagcgtcggaatgctaacgttcctgtaggcactttctgttccaccgcgaagactcatcgccgccgtgtcagaagtcgttac 31202573  T
Q  285 catcacaccgaaacattctctg 306  Q
    | |||||||  | |||||||||    
T  31202574 cgtcacaccagagcattctctg 31202595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 151 - 260
Target Start/End: Complemental strand, 20025361 - 20025253
Alignment:
Q  151 tcactttccacaacattttcttacacactctttgtcagttgcattaatgacttgagcgtcggtgtgctaacgtacctgcagacacctttcgttccactgc 250  Q
    ||||||| ||||||| ||||| ||||||||||| |||||| ||||  ||||   ||||| || ||| ||||||   |||||||||||||||| |||| ||    
T  20025361 tcactttacacaacactttct-acacactctttctcagtttcattcctgacagtagcgttggagtgttaacgtgtgtgcagacacctttcgtcccaccgc 20025263  T
Q  251 gatgactcat 260  Q
    || |||||||    
T  20025262 gaagactcat 20025253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 174 - 262
Target Start/End: Complemental strand, 16621264 - 16621176
Alignment:
Q  174 cacactctttgtcagttgcattaatgacttgagcgtcggtgtgctaacgtacctgcagacacctttcgttccactgcgatgactcatcg 262  Q
    |||||||||| |||||| || || || ||||||||| |  ||| |||||| ||| || |||||||||||||||| | || |||||||||    
T  16621264 cacactctttctcagttccaatattggcttgagcgttgaagtgttaacgtgcctacatacacctttcgttccaccgtgaagactcatcg 16621176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 70; Significance: 2e-31; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 36 - 305
Target Start/End: Complemental strand, 12516377 - 12516110
Alignment:
Q  36 atcaccctacacgtgtactactccgcccctaatcacacgcagcataactcggagatgattatgatcaacgcgtgcctatatagaggtggacttgcttcac 135  Q
    |||||||||||||||| || ||||| ||||||||||| |  ||||||  |||||| | |||||  ||| ||   |||||||| ||||| |||||||||||    
T  12516377 atcaccctacacgtgtcctgctccgtccctaatcacatgtcgcataaggcggagacggttatggccaaggcacacctatataaaggtgaacttgcttcac 12516278  T
Q  136 tctcggggtacattctcactttccacaacattttcttacacactctttgtcagttgcattaatgacttgagcgtcggtgtgctaacgtacctgcagacac 235  Q
     |||  |||||||  ||||||| ||||||| ||  ||||||| ||||| |||||| ||||| | ||||||||||||| ||||||||||  |||||| |||    
T  12516277 cctcaaggtacata-tcacttttcacaacactta-ttacacaatctttctcagttccattactaacttgagcgtcggagtgctaacgtgtctgcaggcac 12516180  T
Q  236 ctttcgttccactgcgatgactcatcgtcgctgtgccggaagccgttaccatcacaccgaaacattctct 305  Q
    |||||||| |||   || |||| |||||||  |||| ||||| |||| ||||||||||||| ||||||||    
T  12516179 ctttcgtttcaccatgaagactgatcgtcgtcgtgctggaagtcgttgccatcacaccgaagcattctct 12516110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 24 - 316
Target Start/End: Complemental strand, 25496142 - 25495853
Alignment:
Q  24 ccccgcgcgagaatcaccctacacgtgtactactccgcccctaatcacacgcagcataactcggagatgattatgatcaacgcgtgcctatatagaggtg 123  Q
    ||||| ||||| |||| || |||||||| |||| |||  ||||||||||||| ||||||| |||||| | |||||||||||| | |||||||||  ||||    
T  25496142 ccccgagcgaggatcatccaacacgtgtcctacaccgttcctaatcacacgccgcataacccggagacggttatgatcaacgtgcgcctatataagggtg 25496043  T
Q  124 gacttgcttcactctcggggtacattctcactttccacaacattttcttacacactctttgtcagttgcattaatgacttgagcgtcggtgtgctaacgt 223  Q
     |||||||||||  |   ||||||   |||||||   |||| | |||||||||||||||| ||||||  |||| ||||||||| ||| | ||||||||||    
T  25496042 aacttgcttcacctttaaggtacaca-tcacttttttcaac-tcttcttacacactctttctcagtttgattactgacttgag-gtcagagtgctaacgt 25495946  T
Q  224 acctgcagacacctttcgttccactgcgatgactcatcgtcgctgtgccggaagccgttaccatcacaccgaaacattctctgtcgcctttgc 316  Q
      |||||| |||||| ||  |||| |||| || |||||  ||  |||||||||||||||||| |||||||| |||||||||||||||| ||||    
T  25495945 gtctgcaggcaccttacgccccaccgcgaagaatcatcaccgtcgtgccggaagccgttaccgtcacaccggaacattctctgtcgccgttgc 25495853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 27 - 306
Target Start/End: Original strand, 12731451 - 12731728
Alignment:
Q  27 cgcgcgagaatcaccctacacgtgtactactccgcccctaatcacacgcagcataactcggagatgattatgatcaacgcgtgcctatatagaggtggac 126  Q
    ||||||||||||||| |||| |||| |||||| | ||| |||||||||| ||||||| || |||   |||||| || |||   | ||||||  |||| ||    
T  12731451 cgcgcgagaatcaccttacatgtgtcctactctgtcccaaatcacacgccgcataacccgaagacagttatgaccagcgcacacatatataagggtgaac 12731550  T
Q  127 ttgcttcactctcggggtacattctcactttccacaacattttcttacacactctttgtcagttgcattaatgacttgagcgtcggtgtgctaacgtacc 226  Q
    ||||||||| |||  ||| ||   ||||||| ||||||| || |||| ||||||||| |||||| |||||||||| |||||||||| || ||||| |       
T  12731551 ttgcttcaccctcaaggttcaca-tcacttttcacaacactt-cttatacactctttctcagttccattaatgacgtgagcgtcggagtactaacatggt 12731648  T
Q  227 tgcagacacctttcgttccactgcgatgactcatcgtcgctgtgccggaagccgttaccatcacaccgaaacattctctg 306  Q
    || || |||| ||||||||||  ||| ||||| ||| ||| |||||||||||| ||||| ||||||||||||||||||||    
T  12731649 tgtaggcaccattcgttccacctcgaagactcttcgccgccgtgccggaagcctttaccgtcacaccgaaacattctctg 12731728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 56 - 277
Target Start/End: Complemental strand, 12108591 - 12108372
Alignment:
Q  56 ctccgcccctaatcacacgcagcataactcggagatgattatgatcaacgcgtgcctatatagaggtggacttgcttcactctcggggtacattctcact 155  Q
    ||||| ||||||||||| || ||||||| |||||    |||||| |||||||||||||||||  |||| ||||||||||| |||  |||||||||||| |    
T  12108591 ctccgtccctaatcacaagccgcataacccggaggccgttatgaccaacgcgtgcctatataagggtgaacttgcttcaccctcaaggtacattctcatt 12108492  T
Q  156 ttccacaacattttcttacacactctttgtcagttgcattaatgacttgagcgtcggtgtgctaacgtacctgcagacacctttcgttccactgcgatga 255  Q
    ||||| ||||  || || |||| ||||| |||||| ||||| | ||||||||||||| ||| |||| | | ||||  |||||||| ||||||  ||| ||    
T  12108491 ttccagaaca--ttatttcacattctttctcagttccattactaacttgagcgtcggagtggtaacatgcatgcatgcacctttcattccaccacgagga 12108394  T
Q  256 ctcatcgtcgctgtgccggaag 277  Q
    ||||||||||  ||||||||||    
T  12108393 ctcatcgtcgtcgtgccggaag 12108372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 36 - 259
Target Start/End: Original strand, 431215 - 431436
Alignment:
Q  36 atcaccctacacgtgtactactccgcccctaatcacacgcagcataactcggagatgattatgatcaacgcgtgcctatatagaggtggacttgcttcac 135  Q
    |||||| ||||||||| || ||||  |||||||||||||| ||||||| || |||   |||||| |||| || |||||||||  ||||||| ||||||||    
T  431215 atcaccttacacgtgtcctcctccatccctaatcacacgctgcataacccgcagacagttatgagcaacacgcgcctatataagggtggacatgcttcac 431314  T
Q  136 tctcggggtacattctcactttccacaacattttcttacacactctttgtcagttgcattaatgacttgagcgtcggtgtgctaacgtacctgcagacac 235  Q
     |||  || ||| | ||||||| |||| || ||||  || |||||||| |||||| ||||| ||||||||||||||  ||||||||||  ||| || |||    
T  431315 cctcaagggacaat-tcacttttcacagcactttcc-acgcactctttctcagttccattattgacttgagcgtcgaagtgctaacgtgtctgtaggcac 431412  T
Q  236 ctttcgttccactgcgatgactca 259  Q
    ||||| |||||| |||| ||||||    
T  431413 ctttctttccaccgcgaagactca 431436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 64 - 259
Target Start/End: Original strand, 17485553 - 17485744
Alignment:
Q  64 ctaatcacacgcagcataactcggagatgattatgatcaacgcgtgcctatatagaggtggacttgcttcactctcggggtacattctcactttccacaa 163  Q
    |||||||||||||||||||| |||||| |||||||| ||||||| ||||||| |   |||   ||||||||| |||  |||||  | ||| ||| |||||    
T  17485553 ctaatcacacgcagcataacccggagacgattatgaccaacgcgcgcctatacac--gtgattttgcttcaccctcaaggtactat-tcattttacacaa 17485649  T
Q  164 cattttcttacacactctttgtcagttgcattaatgacttgagcgtcggtgtgctaacgtacctgcagacacctttcgttccactgcgatgactca 259  Q
    |||| ||| |||||||| || ||| || ||||| |||||||||||| || ||||||| || ||  ||||||||||||||||||| |||| ||||||    
T  17485650 cattctct-acacactccttctcaattccattactgacttgagcgttggggtgctaatgtgcccacagacacctttcgttccaccgcgaagactca 17485744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 62 - 247
Target Start/End: Complemental strand, 1770992 - 1770808
Alignment:
Q  62 ccctaatcacacgcagcataactcggagatgattatgatcaacgcgtgcctatatagaggtggacttgcttcactctcggggtacattctcactttccac 161  Q
    ||||||||| |||| |||||| ||||||| | |||||  |||||||  ||||||||  || | ||||||||||  |||  ||  |||  ||||||| |||    
T  1770992 ccctaatcatacgccgcataattcggagacggttatgcacaacgcgcacctatataagggcgaacttgcttcatcctcaaggcgcatgatcacttttcac 1770893  T
Q  162 aacattttcttacacactctttgtcagttgcattaatgacttgagcgtcggtgtgctaacgtacctgcagacacctttcgttccac 247  Q
    |||| ||||| ||||||||||  |||||| ||||| | ||||||||||||| || ||||| | | |||||||||||||| ||||||    
T  1770892 aacactttct-acacactcttcctcagttccattactaacttgagcgtcggagtactaacatgcttgcagacacctttccttccac 1770808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 151 - 223
Target Start/End: Original strand, 17143762 - 17143833
Alignment:
Q  151 tcactttccacaacattttcttacacactctttgtcagttgcattaatgacttgagcgtcggtgtgctaacgt 223  Q
    ||||||| ||||||| ||||| ||||||||||| |||||| ||||| ||||||||||||||| ||||||||||    
T  17143762 tcacttttcacaacactttct-acacactctttctcagttccattactgacttgagcgtcggagtgctaacgt 17143833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 172 - 262
Target Start/End: Complemental strand, 21649471 - 21649381
Alignment:
Q  172 tacacactctttgtcagttgcattaatgacttgagcgtcggtgtgctaacgtacctgcagacacctttcgttccactgcgatgactcatcg 262  Q
    |||||| ||| | |||||| ||||| |||||||| ||| || |||||||||| | ||||| ||||||||||||||| |||| |||||||||    
T  21649471 tacacattctctctcagttccattactgacttgatcgttggggtgctaacgtgcttgcaggcacctttcgttccaccgcgaagactcatcg 21649381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 151 - 257
Target Start/End: Original strand, 9801097 - 9801201
Alignment:
Q  151 tcactttccacaacattttcttacacactctttgtcagttgcattaatgacttgagcgtcggtgtgctaacgtacctgcagacacctttcgttccactgc 250  Q
    ||||||| ||||||| ||||| ||||||||||| || |||  |||| ||||||||| || |  |||||||||| | ||||| ||||||||||||||||||    
T  9801097 tcacttttcacaacactttct-acacactctttctctgttctattactgacttgagtgttga-gtgctaacgtgcttgcaggcacctttcgttccactgc 9801194  T
Q  251 gatgact 257  Q
    || ||||    
T  9801195 gaagact 9801201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 27 - 247
Target Start/End: Original strand, 14859989 - 14860207
Alignment:
Q  27 cgcgcgagaatcaccctacacgtgtactactccgcccctaatcacacgcagcataactcggagatgattatgatcaacgcgtgcctatatagaggtggac 126  Q
    ||||| || |||||| ||||||||| || ||| | ||||||||| ||||  ||||||  ||||| | ||||||   | ||| |||||||||  |||| ||    
T  14859989 cgcgcaaggatcaccatacacgtgtcctgctctgtccctaatcatacgcctcataacctggagacggttatgacttaagcgcgcctatataagggtgaac 14860088  T
Q  127 ttgcttcactctcggggtacattctcactttccacaacattttcttacacactctttgtcagttgcattaatgacttgagcgtcggtgtgctaacgtacc 226  Q
    ||||||||| |||  ||||||   ||||||| ||||||| || |||||| ||| ||| |||||| ||||| ||| |||||  || | ||||||| || ||    
T  14860089 ttgcttcaccctcaaggtacaca-tcacttttcacaacactt-cttacaaactgtttctcagttccattactgagttgagaatcagagtgctaatgtgcc 14860186  T
Q  227 tgcagacacctttcgttccac 247  Q
    ||||  |||||||||||||||    
T  14860187 tgcaagcacctttcgttccac 14860207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 151 - 305
Target Start/End: Complemental strand, 12252066 - 12251913
Alignment:
Q  151 tcactttccacaacattttcttacacactctttgtcagttgcattaatgacttgagcgtcggtgtgctaacgtacctgcagacacctttcgttccactgc 250  Q
    ||||||| ||||||| || |||||||||||||| ||| || | ||| ||||||||| ||| | |||||||| | ||||||  ||||||| || | | |||    
T  12252066 tcacttttcacaacaatt-cttacacactctttctcattttcgttactgacttgagtgtcagagtgctaacatgcctgcatgcaccttttgtcctattgc 12251968  T
Q  251 gatgactcatcgtcgctgtgccggaagccgttaccatcacaccgaaacattctct 305  Q
    || ||||||||| ||  ||| |||||   ||||||||||||  ||| ||||||||    
T  12251967 gaagactcatcgccgtcgtgtcggaaatagttaccatcacaatgaagcattctct 12251913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 151 - 209
Target Start/End: Original strand, 28723787 - 28723844
Alignment:
Q  151 tcactttccacaacattttcttacacactctttgtcagttgcattaatgacttgagcgt 209  Q
    ||||||| ||||||||||||| ||||||||||| | |||| ||||| ||||||||||||    
T  28723787 tcacttttcacaacattttct-acacactctttcttagttccattagtgacttgagcgt 28723844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 202 - 247
Target Start/End: Original strand, 2311897 - 2311942
Alignment:
Q  202 ttgagcgtcggtgtgctaacgtacctgcagacacctttcgttccac 247  Q
    |||||||| || ||||||||||| ||||||||||||||| ||||||    
T  2311897 ttgagcgttggagtgctaacgtatctgcagacacctttcattccac 2311942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 192 - 301
Target Start/End: Complemental strand, 20622444 - 20622335
Alignment:
Q  192 cattaatgacttgagcgtcggtgtgctaacgtacctgcagacacctttcgttccactgcgatgactcatcgtcgctgtgccggaagccgttaccatcaca 291  Q
    ||||| |||||||||||||   ||| |||| | |||||||  |||||||||| |||||||| |||||| ||  || || ||||||  |||| || |||||    
T  20622444 cattactgacttgagcgtcaaagtgttaacatgcctgcaggaacctttcgtttcactgcgaagactcaacgcggccgtaccggaaatcgttgccgtcaca 20622345  T
Q  292 ccgaaacatt 301  Q
    ||||||||||    
T  20622344 ccgaaacatt 20622335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 192 - 264
Target Start/End: Original strand, 8122967 - 8123039
Alignment:
Q  192 cattaatgacttgagcgtcggtgtgctaacgtacctgcagacacctttcgttccactgcgatgactcatcgtc 264  Q
    ||||| |||||||||||| || |||||||||| |||||| ||||||||| ||  || | || |||||||||||    
T  8122967 cattactgacttgagcgttggagtgctaacgtgcctgcatacacctttcattttaccgtgaagactcatcgtc 8123039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 151 - 247
Target Start/End: Original strand, 21342300 - 21342395
Alignment:
Q  151 tcactttccacaacattttcttacacactctttgtcagttgcattaatgacttgagcgtcggtgtgctaacgtacctgcagacacctttcgttccac 247  Q
    ||||||| ||||||| ||||| | ||||||||| |||||| ||||| |||||||||||| |   || |||||| |||||| | ||||||||| ||||    
T  21342300 tcacttttcacaacactttct-atacactctttatcagttccattactgacttgagcgttgtactgttaacgtgcctgcatatacctttcgtcccac 21342395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0294 (Bit Score: 69; Significance: 6e-31; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 62 - 222
Target Start/End: Original strand, 167 - 326
Alignment:
Q  62 ccctaatcacacgcagcataactcggagatgattatgatcaacgcgtgcctatatagaggtggacttgcttcactctcggggtacattctcactttccac 161  Q
    |||||||||||| | ||||||| ||||||   |||||| ||||||| ||||| |||  |||| ||||||||||| |||  |||||||||||||||| |||    
T  167 ccctaatcacacactgcataacccggagacagttatgaccaacgcgcgcctagataagggtgaacttgcttcaccctcaaggtacattctcacttttcac 266  T
Q  162 aacattttcttacacactctttgtcagttgcattaatgacttgagcgtcggtgtgctaacg 222  Q
    ||||  |||||||||||||||| |||||| ||||| ||||||||||||||| |||||||||    
T  267 aaca-cttcttacacactctttctcagttccattactgacttgagcgtcggagtgctaacg 326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 66; Significance: 4e-29; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 168 - 317
Target Start/End: Original strand, 14255059 - 14255208
Alignment:
Q  168 ttcttacacactctttgtcagttgcattaatgacttgagcgtcggtgtgctaacgtacctgcagacacctttcgttccactgcgatgactcatcgtcgct 267  Q
    |||||||||||||||| |||||| |||||||||||||||||| || |||||| ||| | ||||| |||| ||||||||||  ||| ||||||||| |||     
T  14255059 ttcttacacactctttctcagtttcattaatgacttgagcgttggagtgctatcgtgcttgcaggcacccttcgttccaccacgaagactcatcgccgcc 14255158  T
Q  268 gtgccggaagccgttaccatcacaccgaaacattctctgtcgcctttgct 317  Q
    | |||||||||| ||||| |||||||| | ||||||||| |||| |||||    
T  14255159 gcgccggaagccattaccgtcacaccggagcattctctgccgccgttgct 14255208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 36 - 290
Target Start/End: Original strand, 23728719 - 23728970
Alignment:
Q  36 atcaccctacacgtgtactactccgcccctaatcacacgcagcataactcggagatgattatgatcaacgcgtgcctatatagaggtggacttgcttcac 135  Q
    |||||||||||||||| || ||| | ||||||||||| || |||||| | | ||| | |||||  ||||| | |||||||||  |||| ||||| |||||    
T  23728719 atcaccctacacgtgtcctgctctgtccctaatcacatgccgcataatttgaagacggttatggccaacgtgcgcctatataagggtgaacttgtttcac 23728818  T
Q  136 tctcggggtacattctcactttccacaacattttcttacacactctttgtcagttgcattaatgacttgagcgtcggtgtgctaacgtacctgcagacac 235  Q
     |||  ||||||   ||||||| ||||||| || |||||||||||||| ||| || |||||||||||||||||||    ||||||||| ||||||  |||    
T  23728819 cctcaaggtacaca-tcacttttcacaacactt-cttacacactctttctcatttccattaatgacttgagcgtcataatgctaacgtgcctgcatccac 23728916  T
Q  236 ctttcgttccactgcgatgactcatcgtcgctgtgccggaagccgttaccatcac 290  Q
    |||||||| ||| |||| ||||||||||||  ||| |||||| | ||||| ||||    
T  23728917 ctttcgtt-caccgcgaagactcatcgtcgtcgtgtcggaagtcattaccgtcac 23728970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 24 - 259
Target Start/End: Complemental strand, 12177590 - 12177357
Alignment:
Q  24 ccccgcgcgagaatcaccctacacgtgtactactccgcccctaatcacacgcagcataactcggagatgattatgatcaacgcgtgcctatatagaggtg 123  Q
    |||||| |||| |||||||||||||||| || | ||  ||||||||| | || ||||||||||||||   |||||  ||| |||  ||||||||  | ||    
T  12177590 ccccgcacgagcatcaccctacacgtgtcctccaccatccctaatcaaatgccgcataactcggagacagttatgcccaatgcgcacctatataaggttg 12177491  T
Q  124 gacttgcttcactctcggggtacattctcactttccacaacattttcttacacactctttgtcagttgcattaatgacttgagcgtcggtgtgctaacgt 223  Q
     |||||||||   |||  |||| | | ||||||| ||||||| ||||| ||||||||||| |||||| ||||| ||||||||| ||||| ||||||||||    
T  12177490 aacttgcttcctcctcaaggtataat-tcacttttcacaacactttct-acacactctttctcagttccattactgacttgagtgtcggagtgctaacgt 12177393  T
Q  224 acctgcagacacctttcgttccactgcgatgactca 259  Q
     | || || ||||||||||||||| ||||| |||||    
T  12177392 gcatgtaggcacctttcgttccaccgcgattactca 12177357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 171 - 293
Target Start/End: Original strand, 4601519 - 4601641
Alignment:
Q  171 ttacacactctttgtcagttgcattaatgacttgagcgtcggtgtgctaacgtacctgcagacacctttcgttccactgcgatgactcatcgtcgctgtg 270  Q
    ||||||| | ||| |||||| ||||| ||||||||||||||| |||||||||| ||||||| ||||||||||||||| |||| |||| |||| |||  ||    
T  4601519 ttacacattatttctcagtttcattactgacttgagcgtcggagtgctaacgtgcctgcagtcacctttcgttccaccgcgaagacttatcgccgccatg 4601618  T
Q  271 ccggaagccgttaccatcacacc 293  Q
    |||||| |  ||||| |||||||    
T  4601619 ccggaaacaattaccgtcacacc 4601641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 63 - 285
Target Start/End: Original strand, 21682516 - 21682736
Alignment:
Q  63 cctaatcacacgcagcataactcggagatgattatgatcaacgcgtgcctatatagaggtggacttgcttcactctcggggtacattctcactttccaca 162  Q
    ||||||||||||||||||||| | ||||  ||||||||||||||  |||||||||  |||| | |||| |||| |||  ||||||   | ||||| ||||    
T  21682516 cctaatcacacgcagcataacccagagactattatgatcaacgcacgcctatataagggtgaatttgcgtcaccctcaaggtacacatt-acttttcaca 21682614  T
Q  163 acattttcttacacactctttgtcagttgcattaatgacttgagcgtcggtgtgctaacgtacctgcagacacctttcgttccactgcgatgactcatcg 262  Q
    | |||| |||||||||||| |   |||| ||||| |||||||||||| || |||| |||||||||  || ||||||||||||||| ||   |||||||||    
T  21682615 atattt-cttacacactctcttctagttccattactgacttgagcgttggagtgcaaacgtacctataggcacctttcgttccacagcagagactcatcg 21682713  T
Q  263 tcgctgtgccggaagccgttacc 285  Q
     ||| || |||||||| ||||||    
T  21682714 ccgccgtaccggaagctgttacc 21682736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 151 - 264
Target Start/End: Complemental strand, 22414853 - 22414741
Alignment:
Q  151 tcactttccacaacattttcttacacactctttgtcagttgcattaatgacttgagcgtcggtgtgctaacgtacctgcagacacctttcgttccactgc 250  Q
    ||||||| ||||||| ||||| ||||||| ||| |||||| ||||| ||||||||||||| | |||||||||| ||||| | ||||||||||||||| ||    
T  22414853 tcacttttcacaacactttct-acacactttttttcagtttcattactgacttgagcgtcagagtgctaacgtgcctgcgggcacctttcgttccaccgc 22414755  T
Q  251 gatgactcatcgtc 264  Q
     | |||||||||||    
T  22414754 aaagactcatcgtc 22414741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 172 - 284
Target Start/End: Complemental strand, 26977798 - 26977686
Alignment:
Q  172 tacacactctttgtcagttgcattaatgacttgagcgtcggtgtgctaacgtacctgcagacacctttcgttccactgcgatgactcatcgtcgctgtgc 271  Q
    |||||||||||| || ||| ||||| |||||||||||| || |||||||||| ||||||| ||||||||||||||| || | || |||||  |||||| |    
T  26977798 tacacactctttctcggttccattactgacttgagcgttggagtgctaacgtgcctgcaggcacctttcgttccaccgcaaagattcatcaccgctgtac 26977699  T
Q  272 cggaagccgttac 284  Q
    ||||| |||||||    
T  26977698 cggaaaccgttac 26977686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 151 - 262
Target Start/End: Complemental strand, 16050472 - 16050362
Alignment:
Q  151 tcactttccacaacattttcttacacactctttgtcagttgcattaatgacttgagcgtcggtgtgctaacgtacctgcagacacctttcgttccactgc 250  Q
    ||||||| ||| ||| ||||| ||||||||||| |||||| ||| |||||||||||||| || |||||||||| |||||||| |||||||  ||||| ||    
T  16050472 tcacttttcaccacactttct-acacactctttctcagttccatcaatgacttgagcgttggagtgctaacgtgcctgcagatacctttctatccaccgc 16050374  T
Q  251 gatgactcatcg 262  Q
    || |||||||||    
T  16050373 gaagactcatcg 16050362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 56 - 246
Target Start/End: Complemental strand, 52565750 - 52565564
Alignment:
Q  56 ctccgcccctaatcacacgcagcataactcggagatgattatgatcaacgcgtgcctatatagaggtggacttgcttcactctcggggtacattctcact 155  Q
    ||||| ||||||||||| || |||||||||||||| |||||||| |||| ||  || |||||  | || ||||||||||| |||  | ||   | |||||    
T  52565750 ctccgtccctaatcacatgctgcataactcggagacgattatgaccaacacg--ccaatataaggatgaacttgcttcaccctcaagttatgat-tcact 52565654  T
Q  156 ttccacaacattttcttacacactctttgtcagttgcattaatgacttgagcgtcggtgtgctaacgtacctgcagacacctttcgttcca 246  Q
    || ||||||| |||||  | |||||||| |||||| | ||| ||||||||||||| | ||||||||||  |||||| ||||||||||||||    
T  52565653 tttcacaacactttctg-cgcactctttttcagttcctttactgacttgagcgtcagagtgctaacgtgtctgcaggcacctttcgttcca 52565564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 151 - 261
Target Start/End: Original strand, 33101520 - 33101629
Alignment:
Q  151 tcactttccacaacattttcttacacactctttgtcagttgcattaatgacttgagcgtcggtgtgctaacgtacctgcagacacctttcgttccactgc 250  Q
    ||||||| ||||||| ||||| ||||||| ||| |||||| |||||  ||||||||||| || |||||||||| ||||||  |||||||| ||| || ||    
T  33101520 tcacttttcacaacactttct-acacactttttctcagttccattaccgacttgagcgttggagtgctaacgtgcctgcatgcacctttcattctacagc 33101618  T
Q  251 gatgactcatc 261  Q
    || ||||||||    
T  33101619 gaagactcatc 33101629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 168 - 305
Target Start/End: Original strand, 16299603 - 16299739
Alignment:
Q  168 ttcttacacactctttgtcagttgcattaatgacttgagcgtcggtgtgctaacgtacctgcagacacctttcgttccactgcgatgactcatcgtcgct 267  Q
    ||||||| |||||||| |||||| ||||| | |||||| |||||| ||||||| || | ||||||||| ||||||||||| || | ||||||||| |||     
T  16299603 ttcttacgcactctttctcagtttcattacttacttgaacgtcggagtgctaatgtgcatgcagacacgtttcgttccaccgc-aagactcatcgccgcc 16299701  T
Q  268 gtgccggaagccgttaccatcacaccgaaacattctct 305  Q
    ||  |||||| ||||||  | |||||| | ||||||||    
T  16299702 gtatcggaagtcgttacggtaacaccggagcattctct 16299739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 151 - 239
Target Start/End: Complemental strand, 5671848 - 5671761
Alignment:
Q  151 tcactttccacaacattttcttacacactctttgtcagttgcattaatgacttgagcgtcggtgtgctaacgtacctgcagacaccttt 239  Q
    ||||||| ||||||| ||||| ||||||||||| |||||| ||||| | |||||||||| || |||||||||| ||| || ||||||||    
T  5671848 tcacttttcacaacactttct-acacactctttctcagttccattactaacttgagcgttggagtgctaacgtgcctacaaacaccttt 5671761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 151 - 247
Target Start/End: Complemental strand, 25408174 - 25408079
Alignment:
Q  151 tcactttccacaacattttcttacacactctttgtcagttgcattaatgacttgagcgtcggtgtgctaacgtacctgcagacacctttcgttccac 247  Q
    ||||||| ||||||| || |||||||||||| | |||||| ||||| |||||||||| | || ||||||||||  |||||| |||||||| ||||||    
T  25408174 tcacttttcacaacactt-cttacacactctctttcagtttcattactgacttgagcattggagtgctaacgtgtctgcaggcacctttcattccac 25408079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 148 - 247
Target Start/End: Original strand, 1659799 - 1659897
Alignment:
Q  148 ttctcactttccacaacattttcttacacactctttgtcagttgcattaatgacttgagcgtcggtgtgctaacgtacctgcagacacctttcgttccac 247  Q
    |||||||||| ||||||| || |||||||| ||||| |||| | ||||| |||||||||||| || ||| ||||||   || ||||||||||||||||||    
T  1659799 ttctcacttttcacaacactt-cttacacattctttctcagatccattattgacttgagcgttggagtgataacgtgtatgtagacacctttcgttccac 1659897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 151 - 262
Target Start/End: Complemental strand, 16030473 - 16030363
Alignment:
Q  151 tcactttccacaacattttcttacacactctttgtcagttgcattaatgacttgagcgtcggtgtgctaacgtacctgcagacacctttcgttccactgc 250  Q
    ||||||| ||||||| ||||| ||||||||||  |||||| ||||| |||||||||| |  |  || |||||| |||||||||||||||| |||||| |     
T  16030473 tcacttttcacaacactttct-acacactcttattcagttccattactgacttgagcatttgactgataacgtgcctgcagacacctttcattccaccgt 16030375  T
Q  251 gatgactcatcg 262  Q
    || |||||||||    
T  16030374 gaagactcatcg 16030363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 185 - 247
Target Start/End: Original strand, 21098891 - 21098953
Alignment:
Q  185 tcagttgcattaatgacttgagcgtcggtgtgctaacgtacctgcagacacctttcgttccac 247  Q
    |||||| ||||| |||||||| |||||| ||||||| || ||||||| |||||||||||||||    
T  21098891 tcagttccattactgacttgatcgtcggagtgctaatgtgcctgcagccacctttcgttccac 21098953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 27 - 135
Target Start/End: Original strand, 14254932 - 14255040
Alignment:
Q  27 cgcgcgagaatcaccctacacgtgtactactccgcccctaatcacacgcagcataactcggagatgattatgatcaacgcgtgcctatatagaggtggac 126  Q
    |||||||| |||||||||||| ||| | |||| | ||||||||| |||| |||||||  |||||   |||||| ||| |||||||||||||  |||| ||    
T  14254932 cgcgcgaggatcaccctacacatgtccaactctgtccctaatcatacgccgcataacctggagaaagttatgaccaaagcgtgcctatataagggtgaac 14255031  T
Q  127 ttgcttcac 135  Q
    ||| |||||    
T  14255032 ttgtttcac 14255040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 151 - 247
Target Start/End: Complemental strand, 34273165 - 34273070
Alignment:
Q  151 tcactttccacaacattttcttacacactctttgtcagttgcattaatgacttgagcgtcggtgtgctaacgtacctgcagacacctttcgttccac 247  Q
    ||||||| ||||||| ||||| ||||||||||| |||||| | ||| |||||||||| | || |||||||||| | |||||  ||||||||| ||||    
T  34273165 tcactttacacaacactttct-acacactctttctcagttccgttactgacttgagcattggagtgctaacgtgcttgcaggtacctttcgtcccac 34273070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 168 - 244
Target Start/End: Complemental strand, 48637613 - 48637537
Alignment:
Q  168 ttcttacacactctttgtcagttgcattaatgacttgagcgtcggtgtgctaacgtacctgcagacacctttcgttc 244  Q
    ||||||||  |||| | |||||| ||||| ||||||||||||| | ||||| |||| ||||||| ||||||||||||    
T  48637613 ttcttacatcctctctttcagttccattactgacttgagcgtcagagtgctgacgtgcctgcaggcacctttcgttc 48637537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 185 - 246
Target Start/End: Complemental strand, 3590872 - 3590811
Alignment:
Q  185 tcagttgcattaatgacttgagcgtcggtgtgctaacgtacctgcagacacctttcgttcca 246  Q
    |||||| ||||| |||||||| |||||| ||||||| || ||||||  ||||||||||||||    
T  3590872 tcagttccattactgacttgatcgtcggagtgctaaggtgcctgcatgcacctttcgttcca 3590811  T

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Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 198 - 262
Target Start/End: Complemental strand, 8018981 - 8018917
Alignment:
Q  198 tgacttgagcgtcggtgtgctaacgtacctgcagacacctttcgttccactgcgatgactcatcg 262  Q
    ||||||||||||||  |||||||||| |||| ||| ||||||||| ||||  ||| |||||||||    
T  8018981 tgacttgagcgtcgtagtgctaacgtgcctgtagatacctttcgtcccaccacgaagactcatcg 8018917  T

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Target: chr4 (Bit Score: 64; Significance: 6e-28; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 36 - 303
Target Start/End: Original strand, 15742053 - 15742317
Alignment:
Q  36 atcaccctacacgtgtactactccgcccctaatcacacgcagcataactcggagatgattatgatcaacgcgtgcctatatagaggtggacttgcttcac 135  Q
    ||||||||||||||||  | ||| | || ||||||||||| ||||||| |||||| | |||||  |||| || |||||||||  |||| | ||||||||     
T  15742053 atcaccctacacgtgtcttgctc-gtccttaatcacacgccgcataacccggagacggttatggccaacacgcgcctatataagggtgaatttgcttcag 15742151  T
Q  136 tctcggggtacattctcactttccacaacattttcttacacactctttgtcagttgcattaatgacttgagcgtcggtgtgctaacgtacctgcagacac 235  Q
    ||||  ||||||   ||||||| ||||||| || |||||||||| ||| |||||| ||||| ||||||||||||  | |||||||||| || |||| |||    
T  15742152 tctcaaggtacaca-tcacttttcacaacactt-cttacacactttttctcagttccattactgacttgagcgtaagagtgctaacgtgccagcaggcac 15742249  T
Q  236 ctttcgttccactgcgatgactcatcgtcgctgtgccggaagccgttaccatcacaccgaaacattct 303  Q
    |||||| |||||  ||| ||||||||||||| ||| | ||| |||||||| |||||||| | ||||||    
T  15742250 ctttcgctccaccacgaagactcatcgtcgccgtgtcagaaaccgttaccgtcacaccggagcattct 15742317  T

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Target: chr4; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 62 - 252
Target Start/End: Original strand, 15514486 - 15514674
Alignment:
Q  62 ccctaatcacacgcagcataactcggagatgattatgatcaacgcgtgcctatatagaggtggacttgcttcactctcggggtacattctcactttccac 161  Q
    ||||||||| | || |||||||  ||||||| |||||| ||  ||| |||||||||  |||| ||||||||||| |||  ||||||   |||||||||||    
T  15514486 ccctaatcatatgccgcataacctggagatggttatgaccagggcgagcctatataagggtgaacttgcttcaccctcaaggtacaca-tcactttccac 15514584  T
Q  162 aacattttcttacacactctttgtcagttgcattaatgacttgagcgtcggtgtgctaacgtacctgcagacacctttcgttccactgcga 252  Q
    |||| || |||||||||||||| |||||| ||||| |||||||||||| || |||||||||| ||| ||| |||| |||||||||| ||||    
T  15514585 aacactt-cttacacactctttttcagttccattactgacttgagcgttggagtgctaacgtgcctacaggcacccttcgttccaccgcga 15514674  T

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Target: chr4; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 36 - 231
Target Start/End: Original strand, 16012371 - 16012563
Alignment:
Q  36 atcaccctacacgtgtactactccgcccctaatcacacgcagcataactcggagatgattatgatcaacgcgtgcctatatagaggtggacttgcttcac 135  Q
    |||||||||||||||| || ||||| | |||||||||||| |||||||||||| | |||||| | ||||||| |||||||||  |||| |||||||||||    
T  16012371 atcaccctacacgtgttctgctccgtcactaatcacacgccgcataactcggatacgattattaccaacgcgcgcctatataagggtgaacttgcttcac 16012470  T
Q  136 tctcggggtacattctcactttccacaacattttcttacacactctttgtcagttgcattaatgacttgagcgtcggtgtgctaacgtacctgcag 231  Q
     |||  | |||| | ||||||  |||||    |||||||||||||| | |||||| ||||| ||||||||||||||| ||| |||||| |||||||    
T  16012471 -ctcaagataca-tatcacttctcacaa-tgcttcttacacactctatctcagttccattactgacttgagcgtcggagtgttaacgtgcctgcag 16012563  T

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Target: chr4; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 151 - 265
Target Start/End: Complemental strand, 12683863 - 12683750
Alignment:
Q  151 tcactttccacaacattttcttacacactctttgtcagttgcattaatgacttgagcgtcggtgtgctaacgtacctgcagacacctttcgttccactgc 250  Q
    ||||||| ||||||| ||||| ||||||||||| |||||| ||||| | |||||||||| || |||||||||| ||||||| ||||||||||||||| ||    
T  12683863 tcacttttcacaacactttct-acacactctttctcagtttcattactaacttgagcgttggagtgctaacgtgcctgcaggcacctttcgttccaccgc 12683765  T
Q  251 gatgactcatcgtcg 265  Q
     | ||||||||||||    
T  12683764 aaagactcatcgtcg 12683750  T

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Target: chr4; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 43 - 244
Target Start/End: Original strand, 14601921 - 14602120
Alignment:
Q  43 tacacgtgtactactccgcccctaatcacacgcagcataactcggagatgattatgatcaacgcgtgcctatatagaggtggacttgcttcactctcggg 142  Q
    ||||||||| || | |||| ||||||||||||| ||||||| ||||||   ||||||||||| |  | |||||||  | || ||||||||||| |||  |    
T  14601921 tacacgtgtccttccccgctcctaatcacacgccgcataacccggagacagttatgatcaacacacggctatataaggatgaacttgcttcaccctcaag 14602020  T
Q  143 gtacattctcactttccacaacattttcttacacactctttgtcagttgcattaatgacttgagcgtcggtgtgctaacgtacctgcagacacctttcgt 242  Q
    |||||    |||||| ||||||| || |||||||||||| | |||||| ||||| |||||||||||| ||  ||||||||| |||||||||| |||||||    
T  14602021 gtacacaa-cacttttcacaacactt-cttacacactctctttcagtttcattactgacttgagcgttggattgctaacgtgcctgcagacaactttcgt 14602118  T

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Target: chr4; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 24 - 283
Target Start/End: Complemental strand, 19643906 - 19643649
Alignment:
Q  24 ccccgcgcgagaatcaccctacacgtgtactactccgcccctaatcacacgcagcataactcggagatgattatgatcaacgcgtgcctatatagaggtg 123  Q
    ||||||||||| |||||| || | |||| ||   ||| |||||||| ||||| ||||||||| |||| | ||||  |||||||  |||||||||  ||||    
T  19643906 ccccgcgcgaggatcaccttatatgtgtcctctaccgtccctaatctcacgccgcataactcagagacggttatcctcaacgcacgcctatataagggtg 19643807  T
Q  124 gacttgcttcactctcggggtacattctcactttccacaacattttcttacacactctttgtcagttgcattaatgacttgagcgtcggtgtgctaacgt 223  Q
     ||||| ||||| |||  ||||   | ||||||| ||||| | ||||| ||||||||||| |||||| ||||| |||||| ||||||||  || ||||||    
T  19643806 aacttgtttcaccctcaaggtatgat-tcacttttcacaagactttct-acacactctttctcagttccattactgacttaagcgtcggattggtaacgt 19643709  T
Q  224 acctgcagacacctttcgttccactgcgatgactcatcgtcgctgtgccggaagccgtta 283  Q
    |||||| | |||||| |||||||   ||| |||||| || ||| || ||||||| |||||    
T  19643708 acctgcgggcaccttccgttccatcacgaagactcaacgccgccgtaccggaagtcgtta 19643649  T

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Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 171 - 261
Target Start/End: Complemental strand, 10981925 - 10981835
Alignment:
Q  171 ttacacactctttgtcagttgcattaatgacttgagcgtcggtgtgctaacgtacctgcagacacctttcgttccactgcgatgactcatc 261  Q
    ||||||||||||| || ||| ||||| ||||||||| || || |||| |||||  |||||| |||||||||| ||||||||| ||||||||    
T  10981925 ttacacactctttctcggttccattactgacttgagtgttggagtgccaacgttgctgcaggcacctttcgtcccactgcgaagactcatc 10981835  T

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Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 42 - 262
Target Start/End: Complemental strand, 5518726 - 5518508
Alignment:
Q  42 ctacacgtgtactactccgcccctaatcacacgcagcataactcggagatgattatgatcaacgcgtgcctatatagaggtggacttgcttcactctcgg 141  Q
    |||||||||| || | | || |||||||| ||||   ||||| |||||| | |||||  |||| || |||||||||  |||| ||||||||||| |||      
T  5518726 ctacacgtgtccttccctgctcctaatcatacgccttataacccggagacggttatgcccaacacgcgcctatataagggtgaacttgcttcaccctcaa 5518627  T
Q  142 ggtacattctcactttccacaacattttcttacacactctttgtcagttgcattaatgacttgagcgtcggtgtgctaacgtacctgcagacacctttcg 241  Q
    |||||    ||||||||||||||| || |||||||| ||| | ||||||  |||| |||||||||||| |  ||||||||||  |||||  |||||||||    
T  5518626 ggtacgca-tcactttccacaacactt-cttacacattctctctcagttcaattactgacttgagcgttgaagtgctaacgtgtctgcactcacctttcg 5518529  T
Q  242 ttccactgcgatgactcatcg 262  Q
    ||||| ||||| |||| ||||    
T  5518528 ttccattgcgaagacttatcg 5518508  T

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Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 151 - 239
Target Start/End: Complemental strand, 47253355 - 47253268
Alignment:
Q  151 tcactttccacaacattttcttacacactctttgtcagttgcattaatgacttgagcgtcggtgtgctaacgtacctgcagacaccttt 239  Q
    ||||||| ||||||| ||| ||||||||||||| |||||| ||||| |||||||||||| || |||||||| | ||||||  |||||||    
T  47253355 tcacttttcacaacacttt-ttacacactctttctcagttccattactgacttgagcgttggagtgctaacatgcctgcaagcaccttt 47253268  T

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Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 151 - 264
Target Start/End: Complemental strand, 19809779 - 19809668
Alignment:
Q  151 tcactttccacaacattttcttacacactctttgtcagttgcattaatgacttgagcgtcggtgtgctaacgtacctgcagacacctttcgttccactgc 250  Q
    ||||||| ||||||| ||||| ||||||||||| | |||| ||||| |||||||||||| || |||||||| |  ||||||  |||||||| || || ||    
T  19809779 tcacttttcacaacactttct-acacactctttcttagtttcattactgacttgagcgttggagtgctaacatgtctgcaggaacctttcg-tcaaccgc 19809682  T
Q  251 gatgactcatcgtc 264  Q
    || |||||||||||    
T  19809681 gaagactcatcgtc 19809668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 151 - 266
Target Start/End: Complemental strand, 29157180 - 29157066
Alignment:
Q  151 tcactttccacaacattttcttacacactctttgtcagttgcattaatgacttgagcgtcggtgtgctaacgtacctgcagacacctttcgttccactgc 250  Q
    ||||||| ||||||| || || ||||||| ||| |||||| ||||| | |||||||||| || |||| |||||  |||||  ||||||||||||||| ||    
T  29157180 tcactttacacaacacttact-acacactttttctcagttccattactaacttgagcgttggagtgcaaacgtgtctgcatgcacctttcgttccaccgc 29157082  T
Q  251 gatgactcatcgtcgc 266  Q
     | || ||||||||||    
T  29157081 aaggattcatcgtcgc 29157066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 176 - 276
Target Start/End: Complemental strand, 3982002 - 3981904
Alignment:
Q  176 cactctttgtcagttgcattaatgacttgagcgtcggtgtgctaacgtacctgcagacacctttcgttccactgcgatgactcatcgtcgctgtgccgga 275  Q
    |||||||| |||||| |||||  |||||||| || || |||||||||| | ||||  ||||||||||||||| | || |||||||| || |||| |||||    
T  3982002 cactctttttcagttccatta--gacttgagtgttggagtgctaacgtgcatgcatgcacctttcgttccaccgtgaagactcatcctcactgtaccgga 3981905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 244
Target Start/End: Complemental strand, 13171134 - 13171065
Alignment:
Q  175 acactctttgtcagttgcattaatgacttgagcgtcggtgtgctaacgtacctgcagacacctttcgttc 244  Q
    ||||||||  |||||| ||||| ||||||||| || || |||||||||| ||||||  ||||||||||||    
T  13171134 acactcttgctcagttccattactgacttgagagttggagtgctaacgtgcctgcaagcacctttcgttc 13171065  T

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Target: chr8 (Bit Score: 59; Significance: 6e-25; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 56 - 250
Target Start/End: Original strand, 24576502 - 24576694
Alignment:
Q  56 ctccgcccctaatcacacgcagcataactcggagatgattatgatcaacgcgtgcctatatagaggtggacttgcttcactctcggggtacattctcact 155  Q
    |||||| ||||||||||||  |||||||  ||||  | ||||||||||||||||||||||||  |||| |||| |||||| |||  ||||||   | |||    
T  24576502 ctccgctcctaatcacacgtcgcataacctggaggcggttatgatcaacgcgtgcctatataagggtgaacttccttcaccctcaaggtaca-cattact 24576600  T
Q  156 ttccacaacattttcttacacactctttgtcagttgcattaatgacttgagcgtcggtgtgctaacgtacctgcagacacctttcgttccactgc 250  Q
    || |||||||  ||||||||||||| || | |||| ||||| ||||||||||||| | ||| |||||| ||||||| ||||||||||||||||||    
T  24576601 tttcacaaca-cttcttacacactcatttttagttccattactgacttgagcgtcagagtgttaacgtgcctgcaggcacctttcgttccactgc 24576694  T

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Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 65 - 238
Target Start/End: Complemental strand, 21416901 - 21416730
Alignment:
Q  65 taatcacacgcagcataactcggagatgattatgatcaacgcgtgcctatatagaggtggacttgcttcactctcggggtacattctcactttccacaac 164  Q
    |||||||| || ||||||| |||||| | |||||  |||||||  |||||| |  |||| ||||||||||| ||   |||||  | ||| ||| ||||||    
T  21416901 taatcacaggccgcataacccggagacggttatgcccaacgcgcccctatacaagggtgaacttgcttcacccttaaggtacgat-tcatttttcacaac 21416803  T
Q  165 attttcttacacactctttgtcagttgcattaatgacttgagcgtcggtgtgctaacgtacctgcagacacctt 238  Q
    | ||||| ||||||||||| |||||| ||||| ||||||||||||||| |||||||||  | ||||||||||||    
T  21416802 actttct-acacactctttctcagtttcattactgacttgagcgtcggagtgctaacgagcatgcagacacctt 21416730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 151 - 242
Target Start/End: Complemental strand, 30477719 - 30477629
Alignment:
Q  151 tcactttccacaacattttcttacacactctttgtcagttgcattaatgacttgagcgtcggtgtgctaacgtacctgcagacacctttcgt 242  Q
    ||||||| ||||||| ||||| ||||||||||| |||||| | ||| |||||||||||| || |||||||||| | |||||||| |||||||    
T  30477719 tcacttttcacaacactttct-acacactctttctcagtttcgttactgacttgagcgttggagtgctaacgtgcatgcagacatctttcgt 30477629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 206 - 284
Target Start/End: Complemental strand, 20055603 - 20055525
Alignment:
Q  206 gcgtcggtgtgctaacgtacctgcagacacctttcgttccactgcgatgactcatcgtcgctgtgccggaagccgttac 284  Q
    ||||||| || ||||||| |||||||||||| |||||||||| |||| || |||||| ||| || ||||||||||||||    
T  20055603 gcgtcggagtactaacgtgcctgcagacacccttcgttccaccgcgaagattcatcgccgccgtaccggaagccgttac 20055525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 172 - 262
Target Start/End: Complemental strand, 23269304 - 23269214
Alignment:
Q  172 tacacactctttgtcagttgcattaatgacttgagcgtcggtgtgctaacgtacctgcagacacctttcgttccactgcgatgactcatcg 262  Q
    |||||||||||| |||||| ||||| |||||| || || || |||||||| | |||| |||||||||||||||||| || | |||||||||    
T  23269304 tacacactctttatcagttccattactgacttaagtgttggagtgctaacttgcctgtagacacctttcgttccaccgcaaagactcatcg 23269214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 172 - 241
Target Start/End: Original strand, 3459517 - 3459586
Alignment:
Q  172 tacacactctttgtcagttgcattaatgacttgagcgtcggtgtgctaacgtacctgcagacacctttcg 241  Q
    |||||||||||  |||||| ||||| ||||||||||| ||| |||||||||| ||||||| |||||||||    
T  3459517 tacacactcttgctcagttccattactgacttgagcgccggagtgctaacgtgcctgcaggcacctttcg 3459586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 151 - 258
Target Start/End: Complemental strand, 13754836 - 13754730
Alignment:
Q  151 tcactttccacaacattttcttacacactctttgtcagttgcattaatgacttgagcgtcggtgtgctaacgtacctgcagacacctttcgttccactgc 250  Q
    ||||||| ||||||| ||||| ||||||||||| |||||| ||||| |||||||||||  |  ||| |||||| || |||| |||||||||| ||| |||    
T  13754836 tcactttacacaacactttct-acacactctttctcagtttcattactgacttgagcgatgtagtgttaacgtgccagcaggcacctttcgtcccattgc 13754738  T
Q  251 gatgactc 258  Q
    || |||||    
T  13754737 gaagactc 13754730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 62 - 241
Target Start/End: Original strand, 17698210 - 17698387
Alignment:
Q  62 ccctaatcacacgcagcataactcggagatgattatgatcaacgcgtgcctatatagaggtggacttgcttcactctcggggtacattctcactttccac 161  Q
    |||||||||||||| ||  || ||| ||| | ||||| || ||||| |||||||||  ||||| |||||||||| |||   ||| | | ||||||| |||    
T  17698210 ccctaatcacacgccgctaaattcgaagacggttatgctcgacgcgcgcctatatatgggtggccttgcttcaccctcaaagtataat-tcacttttcac 17698308  T
Q  162 aacattttcttacacactctttgtcagttgcattaatgacttgagcgtcggtgtgctaacgtacctgcagacacctttcg 241  Q
    |||| ||||| ||||||||||| || ||| ||||| |||||||   || ||  |||||||||||| ||||||||||||||    
T  17698309 aacactttct-acacactctttctcggttccattactgacttgcatgttggaatgctaacgtacccgcagacacctttcg 17698387  T

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Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 151 - 260
Target Start/End: Complemental strand, 24507535 - 24507427
Alignment:
Q  151 tcactttccacaacattttcttacacactctttgtcagttgcattaatgacttgagcgtcggtgtgctaacgtacctgcagacacctttcgttccactgc 250  Q
    ||||||| ||||||| ||||| | ||||||||| ||| || ||||| |||||||| ||| || || ||||||| | ||||||||||||||| ||||| ||    
T  24507535 tcacttttcacaacactttct-agacactctttctcatttccattattgacttgatcgttggagtactaacgtgcatgcagacacctttcgctccaccgc 24507437  T
Q  251 gatgactcat 260  Q
     | |||||||    
T  24507436 aaagactcat 24507427  T

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Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 150 - 246
Target Start/End: Original strand, 26916910 - 26917005
Alignment:
Q  150 ctcactttccacaacattttcttacacactctttgtcagttgcattaatgacttgagcgtcggtgtgctaacgtacctgcagacacctttcgttcca 246  Q
    |||||||| ||||||| ||||| ||||||||| | |||||| ||||| ||||||||||||  ||| |||||||| |||  |  ||||||||||||||    
T  26916910 ctcacttttcacaacactttct-acacactctctctcagttccattactgacttgagcgttagtgcgctaacgtgcctaaatgcacctttcgttcca 26917005  T

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Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 151 - 242
Target Start/End: Complemental strand, 13765067 - 13764977
Alignment:
Q  151 tcactttccacaacattttcttacacactctttgtcagttgcattaatgacttgagcgtcggtgtgctaacgtacctgcagacacctttcgt 242  Q
    ||||||| ||||||| ||||| ||||||||||| |||||| ||||| | |||||| | | || ||  |||||| ||||||||||||||||||    
T  13765067 tcactttacacaacactttct-acacactctttctcagtttcattactcacttgaacattggagtcttaacgtgcctgcagacacctttcgt 13764977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 151 - 258
Target Start/End: Complemental strand, 18323021 - 18322915
Alignment:
Q  151 tcactttccacaacattttcttacacactctttgtcagttgcattaatgacttgagcgtcggtgtgctaacgtacctgcagacacctttcgttccactgc 250  Q
    ||||||| ||||||||||||| ||||| ||||| ||||||  |||| |||||||||||| || ||| |||| |  |||||  ||||||| ||||||| ||    
T  18323021 tcacttttcacaacattttct-acacaatctttctcagttctattactgacttgagcgttggagtgttaacatgtctgcatgcaccttttgttccaccgc 18322923  T
Q  251 gatgactc 258  Q
    || |||||    
T  18322922 gaagactc 18322915  T

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Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 185 - 247
Target Start/End: Original strand, 4565439 - 4565501
Alignment:
Q  185 tcagttgcattaatgacttgagcgtcggtgtgctaacgtacctgcagacacctttcgttccac 247  Q
    |||||| ||||| | ||||||  ||||| |||||||| | |||||||||||||||||||||||    
T  4565439 tcagtttcattactaacttgattgtcggagtgctaacatgcctgcagacacctttcgttccac 4565501  T

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Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 173 - 250
Target Start/End: Original strand, 1909742 - 1909819
Alignment:
Q  173 acacactctttgtcagttgcattaatgacttgagcgtcggtgtgctaacgtacctgcagacacctttcgttccactgc 250  Q
    ||||||||||| |||||| ||||| |||||| ||||| |   |||||||||  |||||  ||||||||||||||||||    
T  1909742 acacactctttctcagtttcattactgactttagcgttgaaatgctaacgtgtctgcatgcacctttcgttccactgc 1909819  T

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Target: scaffold0205 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: scaffold0205
Description:

Target: scaffold0205; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 39 - 262
Target Start/End: Complemental strand, 23075 - 22854
Alignment:
Q  39 accctacacgtgtactactccgcccctaatcacacgcagcataactcggagatgattatgatcaacgcgtgcctatatagaggtggacttgcttcactct 138  Q
    ||||||||| ||| || ||||| |||||||||||| | |||||||  ||||| | |||| | |||||||  |||| |||  |||| ||||||||||| ||    
T  23075 accctacacatgtcctgctccgtccctaatcacacaccgcataacctggagagggttatcaccaacgcgcacctacataagggtgaacttgcttcaccct 22976  T
Q  139 cggggtacattctcactttccacaacattttcttacacactctttgtcagttgcattaatgacttgagcgtcggtgtgctaacgtacctgcagacacctt 238  Q
    |  ||||||   ||||||| ||||||| || |||||||||  ||| |||||| ||||| ||||||||||||| | |||||||||| || |||| ||||||    
T  22975 caaggtacacg-tcacttttcacaacactt-cttacacacgatttctcagttccattactgacttgagcgtcagagtgctaacgtgcccgcaggcacctt 22878  T
Q  239 tcgttccactgcgatgactcatcg 262  Q
    |||| ||||||||| ||| |||||    
T  22877 tcgtcccactgcgaagacccatcg 22854  T

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Target: scaffold0205; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 94 - 285
Target Start/End: Original strand, 10872 - 11061
Alignment:
Q  94 ttatgatcaacgcgtgcctatatagaggtggacttgcttcactctcggggtacattctcactttccacaacattttcttacacactctttgtcagttgca 193  Q
    |||||||||| ||| | ||||||| ||||| ||||| ||||| |||  ||||||   ||||||| ||||||| || |||||||||||| | |||||| ||    
T  10872 ttatgatcaatgcgcgtctatataaaggtgaacttgtttcaccctcaaggtacaca-tcacttttcacaacactt-cttacacactctctttcagttcca 10969  T
Q  194 ttaatgacttgagcgtcggtgtgctaacgtacctgcagacacctttcgttccactgcgatgactcatcgtcgctgtgccggaagccgttacc 285  Q
    ||| |||||||||||| || |||||||||| |||||| |||||||| ||||||| ||   || |||||| ||| || ||||||| |||||||    
T  10970 ttattgacttgagcgttggagtgctaacgtgcctgcatacaccttttgttccaccgcagagattcatcgccgccgtaccggaagtcgttacc 11061  T

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Target: scaffold0140 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: scaffold0140
Description:

Target: scaffold0140; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 26 - 293
Target Start/End: Complemental strand, 6499 - 6235
Alignment:
Q  26 ccgcgcgagaatcaccctacacgtgtactactccgcccctaatcacacgcagcataactcggagatgattatgatcaacgcgtgcctatatagaggtgga 125  Q
    |||||||| ||||||||||||||||  ||   |||| ||||||||||| |  | |||| |||||| | ||||| |||||| | |||||||||  | || |    
T  6499 ccgcgcgacaatcaccctacacgtgc-ctctaccgctcctaatcacacaccacgtaacccggagacggttatgttcaacgtgcgcctatataaggatgaa 6401  T
Q  126 cttgcttcactctcggggtacattctcactttccacaacattttcttacacactctttgtcagttgcattaatgacttgagcgtcggtgtgctaacgtac 225  Q
    |||||||||| |||  |||||   |||||||| ||||||| |||| |||||||| ||| |||||| ||||| |||||||||| |||  |||||||||| |    
T  6400 cttgcttcacgctcaaggtac-gactcacttttcacaacactttc-tacacactatttctcagttccattactgacttgagcttcgaagtgctaacgtgc 6303  T
Q  226 ctgcagacacctttcgttccactgcgatgactcatcgtcgctgtgccggaagccgttaccatcacacc 293  Q
    ||||| |||||||| ||||||||||   |||||| ||| || || ||| ||| ||||||| |||||||    
T  6302 ctgcaaacaccttttgttccactgcagagactcaacgttgccgtaccgaaagtcgttaccgtcacacc 6235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 173 - 294
Target Start/End: Complemental strand, 35310 - 35189
Alignment:
Q  173 acacactctttgtcagttgcattaatgacttgagcgtcggtgtgctaacgtacctgcagacacctttcgttccactgcgatgactcatcgtcgctgtgcc 272  Q
    ||||||||||| |||||| | ||| ||||||||| ||| | |||||||||| ||||||  ||| ||||||| |||| ||| |||||| || ||| || ||    
T  35310 acacactctttctcagttccgttactgacttgagtgtcagagtgctaacgtgcctgcaagcacatttcgttgcactacgaagactcaacgccgccgtacc 35211  T
Q  273 ggaagccgttaccatcacaccg 294  Q
    ||||||||||||||||||||||    
T  35210 ggaagccgttaccatcacaccg 35189  T

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Target: scaffold0005 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 43 - 244
Target Start/End: Complemental strand, 215457 - 215258
Alignment:
Q  43 tacacgtgtactactccgcccctaatcacacgcagcataactcggagatgattatgatcaacgcgtgcctatatagaggtggacttgcttcactctcggg 142  Q
    ||||||||| || | |||| ||||||||||||| ||||||| ||||||   ||||||||||| |  | |||||||  | || ||||||||||| |||  |    
T  215457 tacacgtgtccttccccgctcctaatcacacgccgcataacccggagacagttatgatcaacacacggctatataaggatgaacttgcttcaccctcaag 215358  T
Q  143 gtacattctcactttccacaacattttcttacacactctttgtcagttgcattaatgacttgagcgtcggtgtgctaacgtacctgcagacacctttcgt 242  Q
    |||||    |||||| ||||||| || |||||||||||| | |||||| ||||| |||||||||||| ||  ||||||||| |||||||||| |||||||    
T  215357 gtacacaa-cacttttcacaacactt-cttacacactctctttcagtttcattactgacttgagcgttggattgctaacgtgcctgcagacaactttcgt 215260  T

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Target: scaffold0380 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0380
Description:

Target: scaffold0380; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 62 - 293
Target Start/End: Original strand, 6785 - 7014
Alignment:
Q  62 ccctaatcacacgcagcataactcggagatgattatgatcaacgcgtgcctatatagaggtggacttgcttcactctcggggtacattctcactttccac 161  Q
    |||||||||||||| |||||||  ||||| | |||||  ||||| | ||||||| |  |||| ||||| ||||| |||  ||||||   ||||||| |||    
T  6785 ccctaatcacacgccgcataacctggagacggttatggccaacgtgcgcctatacaagggtgaacttgtttcaccctcaaggtacaca-tcacttttcac 6883  T
Q  162 aacattttcttacacactctttgtcagttgcattaatgacttgagcgtcggtgtgctaacgtacctgcagacacctttcgttccactgcgatgactcatc 261  Q
    |||| || ||||||||||| || |||||| || || ||||||||||||| | |  ||||||| ||| |   || ||||||||||||  ||| ||||||||    
T  6884 aacactt-cttacacactcgttctcagtttcaatactgacttgagcgtcagagacctaacgtgcctaccagcatctttcgttccaccacgaagactcatc 6982  T
Q  262 gtcgctgtgccggaagccgttaccatcacacc 293  Q
    | ||| |||||||||||||||||| |||||||    
T  6983 ggcgccgtgccggaagccgttaccgtcacacc 7014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 168 - 247
Target Start/End: Original strand, 4453 - 4532
Alignment:
Q  168 ttcttacacactctttgtcagttgcattaatgacttgagcgtcggtgtgctaacgtacctgcagacacctttcgttccac 247  Q
    ||||||||| |||| | |||||| ||||| |||||||||||| || |||||||||| | |||||||||||||||||||||    
T  4453 ttcttacactctctctttcagtttcattagtgacttgagcgttggagtgctaacgtgcttgcagacacctttcgttccac 4532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0464 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: scaffold0464
Description:

Target: scaffold0464; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 27 - 306
Target Start/End: Complemental strand, 11713 - 11440
Alignment:
Q  27 cgcgcgagaatcaccctacacgtgtactactccgcccctaatcacacgcagcataactcggagatgattatgatcaacgcgtgcctatatagaggtggac 126  Q
    ||||||||||||||| |||| |||| |||||||| ||| |||||||||| ||||||| || |||   |||||| || |||   | ||||||  |||| ||    
T  11713 cgcgcgagaatcaccttacatgtgtcctactccgtcccaaatcacacgccgcataacccgaagacagttatgaccagcgcacacatatataagggtgaac 11614  T
Q  127 ttgcttcactctcggggt-acattctcactttccacaacattttcttacacactctttgtcagttgcattaatgacttgagcgtcggtgtgctaacgtac 225  Q
    ||| ||||| |||  ||| ||||   |||||| |||||||    |||| ||||||||| |||||| |||||||||  ||||||| || |||||||| |      
T  11613 ttggttcaccctcaaggtcacat---cacttttcacaaca----cttatacactctttctcagttccattaatgaggtgagcgttggagtgctaacatgg 11521  T
Q  226 ctgcagacacctttcgttccactgcgatgactcatcgtcgctgtgccggaagccgttaccatcacaccgaaacattctctg 306  Q
     || || |||| ||||||||||   || ||||| ||| ||| ||||| |||||| ||||| |||||| |||||||||||||    
T  11520 ttgtaggcaccattcgttccaccttgaagactcttcgccgccgtgccagaagcctttaccgtcacacagaaacattctctg 11440  T

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Target: scaffold0479 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0479
Description:

Target: scaffold0479; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 27 - 317
Target Start/End: Complemental strand, 5239 - 4953
Alignment:
Q  27 cgcgcgagaatcaccctacacgtgtactactccgcccctaatcacacgcagcataactcggagatgattatgatcaacgcgtgcctatatagaggtggac 126  Q
    ||||||||||||||| |||| |||| |||||||| ||| |||||||||| ||||||  || ||| | ||||||||| |||   ||||||||  |||| ||    
T  5239 cgcgcgagaatcaccttacatgtgtcctactccgtcccaaatcacacgccgcataagccgaagacggttatgatcagcgcacacctatataagggtgaac 5140  T
Q  127 ttgcttcactctcggggtacattctcactttccacaacattttcttacacactctttgtcagttgcattaatgacttgagcgtcggtgtgctaac---gt 223  Q
    ||||||||| |||  ||| ||   ||||||| |||||||  ||||||||||  |||| ||||     |||||||| |||| ||||| || |||||   ||    
T  5139 ttgcttcaccctcaaggttca-cgtcacttttcacaaca-cttcttacacaacctttctcag-----ttaatgacgtgagtgtcggagttctaacgtggt 5047  T
Q  224 acctgcagacacctttcgttccactgcgatgactcatcgtcgctgtgccggaagccgttaccatcacaccgaaacattctctgtcgcctttgct 317  Q
       || || |||||||||||||||  ||| ||||| ||| | | |||||||||||| ||||  |||||||| ||||||||||| |||| |||||    
T  5046 tgttgtaggcacctttcgttccacctcgaagactcttcgccaccgtgccggaagcctttactgtcacaccggaacattctctgccgccgttgct 4953  T

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Target: scaffold0101 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: scaffold0101
Description:

Target: scaffold0101; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 177 - 279
Target Start/End: Original strand, 10756 - 10861
Alignment:
Q  177 actctttgtcagttgcattaatgacttgagcgtcggtgtgctaacgtacctgcagacacctttcgttccactgcgatgactcatc---gtcgctgtgccg 273  Q
    ||||||| |||||| ||||| |||||||| |||||| |||||||| | ||| |||||||||||| ||||||  ||| ||||||||   ||||| ||||||    
T  10756 actctttctcagttccattactgacttgaacgtcggagtgctaacatgcctacagacacctttcattccaccacgaagactcatcactgtcgccgtgccg 10855  T
Q  274 gaagcc 279  Q
    ||||||    
T  10856 gaagcc 10861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0101; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 24 - 83
Target Start/End: Original strand, 10621 - 10680
Alignment:
Q  24 ccccgcgcgagaatcaccctacacgtgtactactccgcccctaatcacacgcagcataac 83  Q
    |||||| |||| |||||| ||||||||| || ||| |||||||||||||||| |||||||    
T  10621 ccccgcacgaggatcaccatacacgtgtcctcctctgcccctaatcacacgcggcataac 10680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0505 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0505
Description:

Target: scaffold0505; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 151 - 262
Target Start/End: Complemental strand, 7963 - 7853
Alignment:
Q  151 tcactttccacaacattttcttacacactctttgtcagttgcattaatgacttgagcgtcggtgtgctaacgtacctgcagacacctttcgttccactgc 250  Q
    ||||||| ||||||| ||||| ||||||||||| ||| |||||||| ||| ||||||||  | |||||||||| ||| ||  |||||||| |||||| |     
T  7963 tcacttttcacaacactttct-acacactctttctcaattgcattactgatttgagcgttagagtgctaacgtgcctacatgcacctttccttccaccgt 7865  T
Q  251 gatgactcatcg 262  Q
    || |||||||||    
T  7864 gaagactcatcg 7853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0092 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0092
Description:

Target: scaffold0092; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 151 - 285
Target Start/End: Original strand, 21631 - 21764
Alignment:
Q  151 tcactttccacaacattttcttacacactctttgtcagttgcattaatgacttgagcgtcggtgtgctaacgtacctgcagacacctttcgttccactgc 250  Q
    ||||||||||||||| || |||| ||||||| | |||||| || || ||||||||| || || |||||||||| || |||| |||  |||||||||||||    
T  21631 tcactttccacaacactt-cttaaacactctctttcagtttcaatactgacttgagtgttggagtgctaacgtgcccgcaggcacacttcgttccactgc 21729  T
Q  251 gatgactcatcgtcgctgtgccggaagccgttacc 285  Q
       ||||||||| ||  || ||||||| |||||||    
T  21730 agagactcatcgccgtcgtaccggaagtcgttacc 21764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0263 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0263
Description:

Target: scaffold0263; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 64 - 221
Target Start/End: Original strand, 20424 - 20579
Alignment:
Q  64 ctaatcacacgcagcataactcggagatgattatgatcaacgcgtgcctatatagaggtggacttgcttcactctcggggtacattctcactttccacaa 163  Q
    ||||||||||||  ||||||||||||| |  ||||| ||||||| |||||||||  |||| | ||  ||||| | |  ||||||   ||||||| || ||    
T  20424 ctaatcacacgctacataactcggagacggctatgaccaacgcgcgcctatatatgggtgaatttatttcacccacaaggtacaca-tcacttttcataa 20522  T
Q  164 cattttcttacacactctttgtcagttgcattaatgacttgagcgtcggtgtgctaac 221  Q
    |||||||| ||||||||||| |||||| | ||| ||||||||||||| | ||||||||    
T  20523 cattttct-acacactctttctcagttcctttagtgacttgagcgtcagagtgctaac 20579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0291 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0291
Description:

Target: scaffold0291; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 151 - 223
Target Start/End: Original strand, 8590 - 8661
Alignment:
Q  151 tcactttccacaacattttcttacacactctttgtcagttgcattaatgacttgagcgtcggtgtgctaacgt 223  Q
    ||||||| ||||||| ||||| ||||||| ||| |||||| ||||| ||||||||||||||  ||||||||||    
T  8590 tcacttttcacaacactttct-acacactgtttttcagtttcattactgacttgagcgtcgaagtgctaacgt 8661  T

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Target: scaffold0022 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 198 - 247
Target Start/End: Original strand, 69283 - 69332
Alignment:
Q  198 tgacttgagcgtcggtgtgctaacgtacctgcagacacctttcgttccac 247  Q
    |||||||||||| || |||||||||| ||||||| ||||||| |||||||    
T  69283 tgacttgagcgttggagtgctaacgtgcctgcaggcaccttttgttccac 69332  T

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