View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18744_high_7 (Length: 253)
Name: NF18744_high_7
Description: NF18744
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18744_high_7 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 9981073 - 9980847
Alignment:
| Q |
1 |
ctatattatctttctgcttccttctcctatttttcttcctctatcatttttcctcattcttgcacacttcattatcttcattctcaacctacctcattta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9981073 |
ctatattatctttctgcttccttctcctatttttcttcctctatcatttttcctcattcttgcacacttcattatcttcattctcaacctacctcattta |
9980974 |
T |
|
| Q |
101 |
tcactccttttcattttgtactttatattcttatcaataacctcaataacacattaaagaannnnnnntctctttctctttctgtcatcttcaacctcaa |
200 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
9980973 |
tcactctttttcattttgtactttatattcttatcaa---------taacacattaaagaaccccccctctctttctctttctgtcatcttcaacctcaa |
9980883 |
T |
|
| Q |
201 |
agttcatttaaagcacttgcttggtaaattcctttg |
236 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
9980882 |
agttcatttaaagcacttgcttggtaaattcctttg |
9980847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University