View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18744_high_9 (Length: 251)
Name: NF18744_high_9
Description: NF18744
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18744_high_9 |
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| [»] chr5 (1 HSPs) |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 8 - 251
Target Start/End: Original strand, 41971176 - 41971419
Alignment:
| Q |
8 |
cgaacaatatcaaaaggtgctctaattaaatagagctgctaaagtaagtgtaatttggatttctattaaaaatgacttnnnnnnnctaatagtgaagcta |
107 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
41971176 |
cgaaaaatatcaaaaggtgctctaattaaatagagctgctaaagtaagtgtaatttggatttctattaaaaatgacttaaaaaaactaatagtgaagcta |
41971275 |
T |
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| Q |
108 |
aaactaggcctgtccaccgccatgctcttccgctggtttcacaaacttcctccaataagaatgattttgccacaccacaaacatttcttcaataggaaca |
207 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
41971276 |
aaactaggcctgcccaccgccatgctcttccgctggtttcacaaacttcctccaataagaatgattttgccacaccataaacatttcttcaataggaaca |
41971375 |
T |
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| Q |
208 |
cctttggtctccggcaaaaacttgtaaataaacaagctcatcac |
251 |
Q |
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| T |
41971376 |
cctttggtctccggcaaaaacttgtaaataaacaagctcatcac |
41971419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 207; Significance: 1e-113; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 8 - 251
Target Start/End: Original strand, 1238670 - 1238913
Alignment:
| Q |
8 |
cgaacaatatcaaaaggtgctctaattaaatagagctgctaaagtaagtgtaatttggatttctattaaaaatgacttnnnnnnnctaatagtgaagcta |
107 |
Q |
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| T |
1238670 |
cgaaaaatatcaaaaggtgctctaattaaatagagctgctaaagtaagtgtaatttggatttctattaaaaatgacttaaaaaaactaatagtgaagcta |
1238769 |
T |
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| Q |
108 |
aaactaggcctgtccaccgccatgctcttccgctggtttcacaaacttcctccaataagaatgattttgccacaccacaaacatttcttcaataggaaca |
207 |
Q |
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| T |
1238770 |
aaactaggcctgtccaccgccatgctcttccgctggtttcacaaacttcctccaataagaatgatttatccacaccacaaacatttcttcaataggaaca |
1238869 |
T |
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| Q |
208 |
cctttggtctccggcaaaaacttgtaaataaacaagctcatcac |
251 |
Q |
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| T |
1238870 |
cctttggtctcctgcaaaaacttgtaaataaacaagctcatcac |
1238913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 97 - 248
Target Start/End: Original strand, 42517372 - 42517529
Alignment:
| Q |
97 |
tagtgaagctaaaactaggcctgtccaccgcca------tgctcttccgctggtttcacaaacttcctccaataagaatgattttgccacaccacaaaca |
190 |
Q |
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| T |
42517372 |
tagtgaagctaaaactaggcttgtccaccgccactgttatggtcgtctgtcggtttcacaaacttcttccaataagaatgattttgccacactttagaca |
42517471 |
T |
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| Q |
191 |
tttcttcaataggaacacctttggtctccggcaaaaacttgtaaataaacaagctcat |
248 |
Q |
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| T |
42517472 |
tttcttcaattggaacacctttggtctccggcaaaaacttgtaaataaacaagctcat |
42517529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 8 - 85
Target Start/End: Original strand, 42517246 - 42517325
Alignment:
| Q |
8 |
cgaacaatatcaaaaggtgctctaattaaatagagctgctaaagtaa--gtgtaatttggatttctattaaaaatgactt |
85 |
Q |
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| T |
42517246 |
cgaaaaatatcaaaaggtgctctaattaaatagagctcctaaagtaagtgtgtaatttagatttctattaaaagtgactt |
42517325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 159 - 218
Target Start/End: Complemental strand, 21403651 - 21403592
Alignment:
| Q |
159 |
ccaataagaatgattttgccacaccacaaacatttcttcaataggaacacctttggtctc |
218 |
Q |
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| T |
21403651 |
ccaataagaatgattttgccacaccaccaacatttcttcagtaggaacacctttggtctc |
21403592 |
T |
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