View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18744_low_12 (Length: 238)
Name: NF18744_low_12
Description: NF18744
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18744_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 207; Significance: 1e-113; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 27946300 - 27946530
Alignment:
| Q |
1 |
ctgaaattttagatatacctctaaatttccaaaattcattgatcagtttgtacttatcagattttgatgctagttgttgttaaggtcattgtaaaatgga |
100 |
Q |
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| T |
27946300 |
ctgaaattttagatatacctctaaatttccaaaattcattgatcagtttgtacttatctgattttgatgctagttgttgttaaggtcattgtaaaatgga |
27946399 |
T |
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| Q |
101 |
cttctttgatacccgttttaattgagtcaaattgtacagcagatacaagtattttctaattggtcagaggatgagataaaggctagccaagactgataag |
200 |
Q |
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| T |
27946400 |
cttctttgatacccgttttaattgagtcaaatggtacagcagatacaagtattttctaatttgtgagaggatgagataaaggctagccaagactgataag |
27946499 |
T |
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| Q |
201 |
aggaatg-catcaaagaatatatgatgatgt |
230 |
Q |
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| T |
27946500 |
aggaatgccatcaaagaatatatgatgatgt |
27946530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 27437937 - 27438020
Alignment:
| Q |
1 |
ctgaaattttagatatacctctaaatttccaaaattcattgatcagtttgtacttatcagattttgatgctagttgttgttaag |
84 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
27437937 |
ctgaaattttagatatacctctaaatttccaaaatttattgatcagtttgtacttatcagattttgatgctagttgtggttaag |
27438020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 19 - 65
Target Start/End: Complemental strand, 27548432 - 27548386
Alignment:
| Q |
19 |
ctctaaatttccaaaattcattgatcagtttgtacttatcagatttt |
65 |
Q |
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| T |
27548432 |
ctctaaatttccaaaattcattgatcagtttgtacttatcagatttt |
27548386 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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