View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18744_low_2 (Length: 600)
Name: NF18744_low_2
Description: NF18744
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18744_low_2 |
 | |
|
| [»] scaffold1415 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 8 - 355
Target Start/End: Complemental strand, 2760693 - 2760346
Alignment:
| Q |
8 |
gagatgaaaataaaccgttttcctatatctatgacatacgataattaacttgcataatgctcttagtaagagattggtttccactgtagatgactatctg |
107 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2760693 |
gagatgaaaataaaccgtttttctatatctatgacatacgataattaacttgcataatgctcttagtaagagattggtttccactgtagatgactatctg |
2760594 |
T |
|
| Q |
108 |
caatcactggaactttcctccacaactaatttagctttttacttctttacctaaaattttgaatcttgtcattattctttggaggataaacttgattagc |
207 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2760593 |
caatcattggaactttcctccacaactaatttagctttttacttctttacctaaaattttgaatcttgtcattattctttggaggataaacttgattagc |
2760494 |
T |
|
| Q |
208 |
ttttatggaaacatttaaattccgatgacttgcagttgaatgaaatattattttttggagattgatgcatggaaagatctccacttatgagaatttggca |
307 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2760493 |
ttttatggaaacattcaaattccgatgacttgcagttgaatgaaatattattttttggagattgatgcatggaaagatctccacttatgagaatttggca |
2760394 |
T |
|
| Q |
308 |
atgagagggtgccagatgctctcgttgtcaataatgtagaaagttctt |
355 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2760393 |
atgagagggtgccagatgctctcgttgtcaataatgtagaaagttctt |
2760346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 8 - 45
Target Start/End: Complemental strand, 40373392 - 40373355
Alignment:
| Q |
8 |
gagatgaaaataaaccgttttcctatatctatgacata |
45 |
Q |
| |
|
|||||||| |||||| |||||||||||||||||||||| |
|
|
| T |
40373392 |
gagatgaacataaactgttttcctatatctatgacata |
40373355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1415 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold1415
Description:
Target: scaffold1415; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 8 - 40
Target Start/End: Complemental strand, 1682 - 1650
Alignment:
| Q |
8 |
gagatgaaaataaaccgttttcctatatctatg |
40 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| |
|
|
| T |
1682 |
gagatgaaaataaactgttttcctatatctatg |
1650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University