View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18744_low_5 (Length: 314)
Name: NF18744_low_5
Description: NF18744
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18744_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 18 - 298
Target Start/End: Original strand, 4243612 - 4243892
Alignment:
| Q |
18 |
agtctttgtgttcccggtgaaatatcgaatcaacagaacaacaaggactaaaaatgcgacagccaaaccaacctttccgattgaggatgtaagtttattc |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4243612 |
agtctttgtgttcccggtgaaatatcgaatcaacagaacaacaaggactaaaaatgcgacagccaaaccaacctttccgattgaggatgtaagtttattc |
4243711 |
T |
|
| Q |
118 |
aaccttgtttgcaaaggggtttcttcgttgatgtcattgcttatggaactcatcatttgtccccatgttgtgttcataccaaccgatgtaacgagcattt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4243712 |
aaccttgtttgcaaaggggtttcttcgttgatgtcattgcttatggaactcatcatttgtccccatgttgtgttcataccaaccgatgtaacgagcattt |
4243811 |
T |
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| Q |
218 |
ttgcatatccatcgacaacttttgttccggaaagcaaaaaaggatgaaagttttgattaatctctacatgatcgctctcac |
298 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4243812 |
ttgcatatccatcgacaacttttgttccggaaagcaaaaaaggatgaaagttttgattaatctctacatgatcgctctcac |
4243892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 18 - 298
Target Start/End: Original strand, 6186668 - 6186948
Alignment:
| Q |
18 |
agtctttgtgttcccggtgaaatatcgaatcaacagaacaacaaggactaaaaatgcgacagccaaaccaacctttccgattgaggatgtaagtttattc |
117 |
Q |
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||||||||| ||||||||||||||||||| ||| |||||||| ||||||||||| |||||| |||||||||| |||||||| || ||||| || |||||| |
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| T |
6186668 |
agtctttgtattcccggtgaaatatcgaaccaagagaacaaccaggactaaaaacgcgacaaccaaaccaacttttccgatcgatgatgttagcttattc |
6186767 |
T |
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| Q |
118 |
aaccttgtttgcaaaggggtttcttcgttgatgtcattgcttatggaactcatcatttgtccccatgttgtgttcataccaaccgatgtaacgagcattt |
217 |
Q |
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||||||||||||||||| ||||| || | ||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| |
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| T |
6186768 |
aaccttgtttgcaaaggtgtttcctcatcgatgtcattgcttatcgaactcatcatttgtccccatgttgtgttcataccgaccgatgtaacaagcattt |
6186867 |
T |
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| Q |
218 |
ttgcatatccatcgacaacttttgttccggaaagcaaaaaaggatgaaagttttgattaatctctacatgatcgctctcac |
298 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| |||||||||||||| ||||||| |
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| T |
6186868 |
ttgcatatccatcgacaacttttgtcccggaaagcaaaaaaggatgaaaattttgatttatctctacatgatcactctcac |
6186948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 166 - 261
Target Start/End: Original strand, 38358431 - 38358526
Alignment:
| Q |
166 |
ctcatcatttgtccccatgttgtgttcataccaaccgatgtaacgagcatttttgcatatccatcgacaacttttgttccggaaagcaaaaaagga |
261 |
Q |
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||||||||||||||||||| |||||| | || || ||||| || ||||| | ||||||||||| |||||||||| ||||| | |||||||||| |
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| T |
38358431 |
ctcatcatttgtccccatgatgtgtttttgcccacagatgttacaagcatctgagcatatccatccacaacttttgcgccggacaacaaaaaagga |
38358526 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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