View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18744_low_6 (Length: 275)
Name: NF18744_low_6
Description: NF18744
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18744_low_6 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 251; Significance: 1e-139; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 21 - 275
Target Start/End: Complemental strand, 45303445 - 45303191
Alignment:
| Q |
21 |
aacattatcaaagagacacagatatcagcttcagcaatcaatgcacccaaccagtttattgagtttcttcccttgaaaaactgattagaaaagactttgc |
120 |
Q |
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| T |
45303445 |
aacattatcaaagagacacagatatcagcttcagcaatcaatgcacccaaccagtttattgagtttcttcccttgaaaaactgattagaaaagactttgc |
45303346 |
T |
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| Q |
121 |
ttttttgtttgttaggtgttggattttgttggaaagtggcactgttattattgttattgatgttatgtttcaagaaattggtgatgtaataggacactga |
220 |
Q |
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| T |
45303345 |
ttttttgtttgttaggtgttggattttgttggaaagtggcactgttattattgttattgatgttatgtttcaagaaattggtgatgtaataggacactga |
45303246 |
T |
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| Q |
221 |
atttgaatcaagtattttccttaaaatgcaattggactatgttggttcaagtatt |
275 |
Q |
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| T |
45303245 |
atttgaatcaagtattttccttaaaatgcatttggactatgttggttcaagtatt |
45303191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 198 - 267
Target Start/End: Complemental strand, 45150059 - 45149990
Alignment:
| Q |
198 |
ttggtgatgtaataggacactgaatttgaatcaagtattttccttaaaatgcaattggactatgttggtt |
267 |
Q |
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| T |
45150059 |
ttggtgctgtaatgggacactgaatttgaatgaggtattttccttaaaatgcatttggactatcttggtt |
45149990 |
T |
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