View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18744_low_7 (Length: 270)
Name: NF18744_low_7
Description: NF18744
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18744_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 1 - 252
Target Start/End: Original strand, 4243893 - 4244144
Alignment:
| Q |
1 |
cggtcatgctcgattcatcaactctcaacgaatgtccatctacgaacaatccatcggctggtacttgatcaccaatcttcaaacaaacaacatcaccaac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4243893 |
cggtcatgctcgattcatcaactctcaacgaatgtccatctacgaacaatccatcggctggtacttgatcaccaatcttcaaacaaacaacatcaccaac |
4243992 |
T |
|
| Q |
101 |
aacaatatcgaatattgataccttttgttggcgcccactacgaaccaaatcaatttgaatatcattgctcacttgagacaatttatcaaattgtttgttt |
200 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4243993 |
aacaatatcgaatattgataccttttgtcggcgcccactacgaaccaaatcaatttgaatatcattgctcacttgagacaatttatcaaattgtttgttt |
4244092 |
T |
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| Q |
201 |
tgtttaaagttgcttattgcagacattgaaataacaatgaaaacagctagaa |
252 |
Q |
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| T |
4244093 |
tgtttaaagttgcttattgcagacattgaaataacaatgaaaacagctagaa |
4244144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 182; Significance: 2e-98; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 250
Target Start/End: Original strand, 6186949 - 6187198
Alignment:
| Q |
1 |
cggtcatgctcgattcatcaactctcaacgaatgtccatctacgaacaatccatcggctggtacttgatcaccaatcttcaaacaaacaacatcaccaac |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| |
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| T |
6186949 |
cggtcatgctcgattcatcaactctcaacgaatgtccatctacgaacaatccatcagccggtacttgatcaccaatcttcaaacaaacaacatcaccaac |
6187048 |
T |
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| Q |
101 |
aacaatatcgaatattgataccttttgttggcgcccactacgaaccaaatcaatttgaatatcattgctcacttgagacaatttatcaaattgtttgttt |
200 |
Q |
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| T |
6187049 |
aacaatatcaaatatagatacctttagccgacgaccacttcgaaccaaatcaatttgaatgtcattgctaacttgagacaatttatcaaattgtttgttt |
6187148 |
T |
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| Q |
201 |
tgtttaaagttgcttattgcagacattgaaataacaatgaaaacagctag |
250 |
Q |
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||||| ||||||||||||| ||||| |||||||| |||||||||||||| |
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| T |
6187149 |
tgtttgaagttgcttattgatgacatcgaaataacgatgaaaacagctag |
6187198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 2 - 127
Target Start/End: Original strand, 6170004 - 6170129
Alignment:
| Q |
2 |
ggtcatgctcgattcatcaactctcaacgaatgtccatctacgaacaatccatcggctggtacttgatcaccaatcttcaaacaaacaacatcaccaaca |
101 |
Q |
| |
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||||||||| |||||||||||||||| |||| |||||| | ||| ||||||| ||||||||||||||| |||||| ||||||||||||||||| |
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| T |
6170004 |
ggtcatgcttcattcatcaactctcaaggaatttccatcgatgaataatccatttatcaatacttgatcaccaatattcaaaaaaacaacatcaccaaca |
6170103 |
T |
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| Q |
102 |
acaatatcgaatattgataccttttg |
127 |
Q |
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||||| || || || |||| |||||| |
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| T |
6170104 |
acaatctcaaagatcgatatcttttg |
6170129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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