View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18745_low_1 (Length: 634)
Name: NF18745_low_1
Description: NF18745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18745_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 360; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 3 - 407
Target Start/End: Complemental strand, 49857832 - 49857430
Alignment:
| Q |
3 |
ttaaaagcaacgagatgaaagctagaaaacaaagaaataaggcttgagattttagagaaaatctattaccgtgacatctttccacatcctcaataccaaa |
102 |
Q |
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| T |
49857832 |
ttaaaagcaccgagatgaaagctagaaaacaaagaaacaaggcttgagattttagagaaaatctattaccgtgacatctttccacatcctcaatatcaaa |
49857733 |
T |
|
| Q |
103 |
agcagtctactcacaataattaattgtagacaacttcattacttccatacaattagaagtaacttcttttaacatttggacttgttatgactacttctcc |
202 |
Q |
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| T |
49857732 |
agaagtctactcacaataattaattgtagacaacttcattacttccatacaattagaagtaacttcttttaacatttggacttgttatgactacttctcc |
49857633 |
T |
|
| Q |
203 |
caccaaacaggaatttcctttgacgctaa-aaaagagtcgaacccgcaactagaaaattttcattgttaagttattatatttttacttttcatatcttat |
301 |
Q |
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| T |
49857632 |
caccaaacaggaatttcctttgacgctaaaaaaagagtcgaacccgcaactagaaaattttcatcgctaagttattatatttttacttttcatatcttat |
49857533 |
T |
|
| Q |
302 |
ttaatgcttattaaaaaatattagtaatataaataatgtcctaaagcatttgttaagaagttcaaagtaaaaactttatcttcaaattaaaatattaaaa |
401 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49857532 |
ttaatgcttattaaaaaatattagtaatata---aatgtcctaaagcatttgttaagaagttcaaagtaaaaactttatcttcaaattaaaatattaaaa |
49857436 |
T |
|
| Q |
402 |
acgcaa |
407 |
Q |
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|||||| |
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| T |
49857435 |
acgcaa |
49857430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 176; E-Value: 2e-94
Query Start/End: Original strand, 440 - 619
Target Start/End: Complemental strand, 49857397 - 49857218
Alignment:
| Q |
440 |
aatccttattaattgccctaacataatcccgtaagtttaaaacctaacttaaatcaagtcaatgacaaaaattaggtggtagggctcttttcacaactca |
539 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49857397 |
aatccttattaattgccctaacataatcccgtaagtttaaaacctaacttaaatcaagtcaatgacaaaaattaggtggtagggctcttttcacaactca |
49857298 |
T |
|
| Q |
540 |
cttgacaatggtgattgggtgaatatgaccgacaaagcaagccagacataagaatgtccaaatgccacaaatgcaaaagc |
619 |
Q |
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| T |
49857297 |
cttgacaatggggattgggtgaatatgaccgacaaagcaagccagacataagaatgtccaaatgccacaaatgcaaaagc |
49857218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 347 - 383
Target Start/End: Complemental strand, 50890819 - 50890783
Alignment:
| Q |
347 |
gcatttgttaagaagttcaaagtaaaaactttatctt |
383 |
Q |
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||||||||||||||| |||||||| |||||||||||| |
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| T |
50890819 |
gcatttgttaagaagctcaaagtagaaactttatctt |
50890783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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