View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18745_low_3 (Length: 370)

Name: NF18745_low_3
Description: NF18745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18745_low_3
NF18745_low_3
[»] chr8 (9 HSPs)
chr8 (13-370)||(44311997-44312350)
chr8 (204-370)||(44301285-44301455)
chr8 (97-249)||(43895799-43895946)
chr8 (267-370)||(43896006-43896109)
chr8 (267-364)||(44306459-44306556)
chr8 (97-177)||(44306223-44306305)
chr8 (205-249)||(44306353-44306397)
chr8 (131-177)||(44305733-44305779)
chr8 (100-129)||(44301201-44301230)
[»] chr3 (1 HSPs)
chr3 (204-370)||(4084057-4084221)
[»] chr6 (2 HSPs)
chr6 (116-190)||(8159402-8159474)
chr6 (330-370)||(8159271-8159311)
[»] chr4 (1 HSPs)
chr4 (278-365)||(18701618-18701708)


Alignment Details
Target: chr8 (Bit Score: 248; Significance: 1e-137; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 13 - 370
Target Start/End: Original strand, 44311997 - 44312350
Alignment:
Q  13 aatatcagaattattaacaacaaataacnnnnnnnnnnnntgttattttgcctctgtaagttatcttaaaatccagttttgcttttaacatgacatttgc 112  Q
    ||||||||||||||||||||||||||||            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44311997 aatatcagaattattaacaacaaataacaaaaaataaaaatgttattttgcctctgtaagttatcttaaaatccagttttgcttttaacatgacatttgc 44312096  T
Q  113 actaaatgttaaacttaagaatcaaatagataatcttgacagcagagataggatcaactgttaaaaatgcagaacacaacnnnnnnnnngagagtaacta 212  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||         |||  ||||||    
T  44312097 actaaatgttaaacttaagaatcaaatagataatcttgacagcagagataggatcaactgttaaa--tgcagaacacaacaaaaaaaatgag--taacta 44312192  T
Q  213 ctaactaatcagagatcaataattaagcaacaaattcaccatnnnnnnntaagttataaataagcaacaaaccaaagcaaagttaacaagccaaaccaac 312  Q
    ||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  44312193 ctaactaatcagagatcaataattaagcaacaaattcaccataaaaaaataagttataaataagcaacaaaccaaagcatagttaacaagccaaaccaac 44312292  T
Q  313 tggcgaagtaggatcaattctcttgaatgaatccattcacaccatttgaaaatttctc 370  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44312293 tggcgaagtaggatcaattctcttgaatgaatccattcacaccatttgaaaatttctc 44312350  T

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Target: chr8; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 204 - 370
Target Start/End: Original strand, 44301285 - 44301455
Alignment:
Q  204 gagtaactactaactaatcagagatcaataattaagcaacaaattcaccatnnnnnnntaagttataaataagcaacaaaccaaagcaaagttaacaagc 303  Q
    |||||||||||||||||||||||||||||||||||||| || ||| |||||       |||||||||||||||||||||| || ||||||| ||||||||    
T  44301285 gagtaactactaactaatcagagatcaataattaagcagcagatttaccataaaaaa-taagttataaataagcaacaaaacatagcaaagctaacaagc 44301383  T
Q  304 caaaccaactggcgaagtaggatcaattctc-----ttgaatgaatccattcacaccatttgaaaatttctc 370  Q
    ||||| ||||||  ||||||||||| ||| |     | ||||||||| ||||||||||||||||||||||||    
T  44301384 caaacaaactgggtaagtaggatcatttcactggaatggaatgaatcaattcacaccatttgaaaatttctc 44301455  T

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Target: chr8; HSP #3
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 97 - 249
Target Start/End: Original strand, 43895799 - 43895946
Alignment:
Q  97 ttaacatgacatttgcactaaatgttaaacttaagaatcaaatagataatcttgacagcagagataggatcaactgttaaaaatgcagaacacaacnnnn 196  Q
    ||||||||||||||||||||||||||||||||| |||||| ||||| ||||||||| |||||||||||||||  ||||  |||||||||||||||         
T  43895799 ttaacatgacatttgcactaaatgttaaacttatgaatcacatagacaatcttgacggcagagataggatcaggtgtt--aaatgcagaacacaataaaa 43895896  T
Q  197 nnnnngagagtaactactaactaatcagagatcaataattaagcaacaaattc 249  Q
            |||||||||||| ||||||||||||||||||||||||||||||||    
T  43895897 aattt---agtaactactaaataatcagagatcaataattaagcaacaaattc 43895946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 267 - 370
Target Start/End: Original strand, 43896006 - 43896109
Alignment:
Q  267 tataaataagcaacaaaccaaagcaaagttaacaagccaaaccaactggcgaagtaggatcaattctcttgaatgaatccattcacaccatttgaaaatt 366  Q
    |||||||||||||||||||| ||||||| |||||||||||| |||||||  ||||||||||| ||| || |||||||||||| |||||||||||||||||    
T  43896006 tataaataagcaacaaaccatagcaaagctaacaagccaaagcaactgggtaagtaggatcacttccctagaatgaatccatccacaccatttgaaaatt 43896105  T
Q  367 tctc 370  Q
    ||||    
T  43896106 tctc 43896109  T

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Target: chr8; HSP #5
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 267 - 364
Target Start/End: Original strand, 44306459 - 44306556
Alignment:
Q  267 tataaataagcaacaaaccaaagcaaagttaacaagccaaaccaactggcgaagtaggatcaattctcttgaatgaatccattcacaccatttgaaaa 364  Q
    |||||||||||||||||||| ||||||| |||||||||||| |||||||  ||||||||||| ||| || ||||||||||||||||||||||||||||    
T  44306459 tataaataagcaacaaaccatagcaaagctaacaagccaaagcaactgggtaagtaggatcatttccctagaatgaatccattcacaccatttgaaaa 44306556  T

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Target: chr8; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 97 - 177
Target Start/End: Original strand, 44306223 - 44306305
Alignment:
Q  97 ttaacatgacatttgcactaaatgttaaacttaagaatcaaatagataatcttgacagc--agagataggatcaactgttaaa 177  Q
    |||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||  |||||||||||||| |||||||    
T  44306223 ttaacatgacatttgcactaaatgttaaacttaagaatcacatagacaatcttgacagcagagagataggatcaagtgttaaa 44306305  T

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Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 205 - 249
Target Start/End: Original strand, 44306353 - 44306397
Alignment:
Q  205 agtaactactaactaatcagagatcaataattaagcaacaaattc 249  Q
    |||||||||||| ||||||||||||||||||||||||||||||||    
T  44306353 agtaactactaaataatcagagatcaataattaagcaacaaattc 44306397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 131 - 177
Target Start/End: Original strand, 44305733 - 44305779
Alignment:
Q  131 gaatcaaatagataatcttgacagcagagataggatcaactgttaaa 177  Q
    |||||| ||||||| |||||||||||||||| ||||||| |||||||    
T  44305733 gaatcacatagatattcttgacagcagagatgggatcaattgttaaa 44305779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 100 - 129
Target Start/End: Original strand, 44301201 - 44301230
Alignment:
Q  100 acatgacatttgcactaaatgttaaactta 129  Q
    ||||||||||||||||||||||||||||||    
T  44301201 acatgacatttgcactaaatgttaaactta 44301230  T

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Target: chr3 (Bit Score: 109; Significance: 9e-55; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 204 - 370
Target Start/End: Original strand, 4084057 - 4084221
Alignment:
Q  204 gagtaactactaactaatcagagatcaataattaagcaacaaattcaccatnnnnnnntaagttataaataagcaacaaaccaaagcaaagttaacaagc 303  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||| || |||| ||||||||    
T  4084057 gagtaactactaactaatcagagatcaataattaagcaacaaattcaccataaaaaa-taagttataaataagcaacaaaccatagtaaagctaacaagc 4084155  T
Q  304 caaaccaactggcgaagtaggatcaattctcttgaatgaatccattcacaccatttgaaaatttctc 370  Q
    ||||||||||||  ||||||||||| |||||| ||||||||||||||||||||||||||||||||||    
T  4084156 caaaccaactggt-aagtaggatcatttctctggaatgaatccattcacaccatttgaaaatttctc 4084221  T

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Target: chr6 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 116 - 190
Target Start/End: Complemental strand, 8159474 - 8159402
Alignment:
Q  116 aaatgttaaacttaagaatcaaatagataatcttgacagcagagataggatcaactgttaaaaatgcagaacaca 190  Q
    ||||||||||||||||||||||||||||||| |||||| ||||||||||||||| ||||  ||||||||||||||    
T  8159474 aaatgttaaacttaagaatcaaatagataatattgacaacagagataggatcaagtgtt--aaatgcagaacaca 8159402  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 330 - 370
Target Start/End: Complemental strand, 8159311 - 8159271
Alignment:
Q  330 ttctcttgaatgaatccattcacaccatttgaaaatttctc 370  Q
    |||||| ||||||||| ||||||||||||||||||||||||    
T  8159311 ttctctagaatgaatcaattcacaccatttgaaaatttctc 8159271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 278 - 365
Target Start/End: Original strand, 18701618 - 18701708
Alignment:
Q  278 aacaaaccaaagcaaagttaacaagccaaaccaactggcgaagtaggatcaat---tctcttgaatgaatccattcacaccatttgaaaat 365  Q
    |||||||||  |||||| ||| || |||||||||| ||  ||||||||||| |   ||||| ||||||||| |||||||||||||||||||    
T  18701618 aacaaaccattgcaaagctaataaaccaaaccaacagggtaagtaggatcattatttctctagaatgaatcaattcacaccatttgaaaat 18701708  T

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