View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18745_low_6 (Length: 288)
Name: NF18745_low_6
Description: NF18745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18745_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 18 - 282
Target Start/End: Original strand, 43164268 - 43164534
Alignment:
| Q |
18 |
gaagagtaaagatcattctgcccgtgtgagtccagatcagcttttaagtgtgtgttgtactgctatacatctctgcttgatttttgttgtcttttactct |
117 |
Q |
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| T |
43164268 |
gaagagcagagatcattctgcccgtgtgagtccagatcagcttttgagtgtgtgttgtactgctatacgtctctgcttgatttttgttgtcttttactct |
43164367 |
T |
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| Q |
118 |
tgtttcttgatcccatgaatgtcctaatgctaatgctgtagtggaagcacatttcttgggttctttttgtttctaaagttctggtataataacccttaaa |
217 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
43164368 |
tgtttcttgatcccatgaatggcctaatgctaatgctgtagtggaagcacatttcttgggttctttttgtttctaaagttctggtataataacctttaaa |
43164467 |
T |
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| Q |
218 |
aaatatgcatgaca--ctgatttttaatggaaccatcaatctttactgtgaattttccggcagcatg |
282 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43164468 |
aaatatgcatgacactctgatttttaatggaaccatcaatctttactgtgaattttccggcagcatg |
43164534 |
T |
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