View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18745_low_8 (Length: 253)

Name: NF18745_low_8

Description: NF18745

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF18745_low_8

[»] chr2 (1 HSPs)

[»] chr7 (1 HSPs)

Target: chr2 (Bit Score: 176; Significance: 6e-95; HSPs: 1)

Name: chr2

Description:

Target: chr2; HSP #1

Raw Score: 176; E-Value: 6e-95

Query Start/End: Original strand, 14 - 208

Target Start/End: Original strand, 6958597 - 6958794

Alignment:

Q	14	caaaggcaaaatgaactaagcttaattgatcggtcg---tcccttaacttaattgattgtttcaaaatggttccattattaaaaaatgtcttaaagtagt	110	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	6958597	caaaggcaaaatgaactaagcttaattgatcggtcgtcgtcccttaacttaattgattgtttcaaaatggttctattattaaaaaatgtcttaaagtagt	6958696	T

Q	111	cccttaaattgtaagttgttatagattttggtatcttccatgagtatttaaccctaaatgtctaaagtttttgtcctttctatcagtttttaaccttc	208	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	6958697	cccttaaattgtaagttgttatagattttggtatcttccatgagtatttaaccctaaatgtctaaagtttttgtcttttctatcagtttttaaccttc	6958794	T

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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)

Name: chr7

Description:

Target: chr7; HSP #1

Raw Score: 33; E-Value: 0.000000001

Query Start/End: Original strand, 33 - 120

Target Start/End: Original strand, 8661679 - 8661767

Alignment:

Q	33	gcttaattgatcggtcg-tcccttaacttaattgattgtttcaaaatggttccattattaaaaaatgtcttaaagtagtcccttaaatt	120	Q
		\|\|\|\|\|\|\|\|\|\|\|\| \| \|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\| \|\| \|\|\|\|\|\| \|\|\|\| \| \|\|\|\|\|\|\| \|\|\|\| \|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|
T	8661679	gcttaattgatcagccggtcccttaacttaattctttgttccagaatggtcccataactaaaaaacgtctcaaagtggtcccttaaatt	8661767	T

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