View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18746_high_5 (Length: 356)

Name: NF18746_high_5
Description: NF18746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18746_high_5
NF18746_high_5
[»] chr1 (1 HSPs)
chr1 (13-356)||(29063676-29064023)


Alignment Details
Target: chr1 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 13 - 356
Target Start/End: Complemental strand, 29064023 - 29063676
Alignment:
Q  13 aatatgacagagagaaagagaattaataagaggaaaaaa-ttcaattttgaacaaattaatactagaaacttcacacttttaattctaaatcaaaacata 111  Q
    ||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29064023 aatatgacagagagacagagaattaataagaggaaaaaaattcaattttgaacaaattaatactagaaacttcacacttttaattctaaatcaaaacata 29063924  T
Q  112 aaaactccattaaaatgcaacagcatttcaaaggaaaaatgtctcnnnnnnn-ctttctacttttacagggaattttctacactcactcac--actatgt 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||         ||||||||||||||||||||||||||||||||||||||  |||||||    
T  29063923 aaaactccattaaaatgcaacagcatttcaaaggaaaaatgtcttttttttttctttctacttttacagggaattttctacactcactcactcactatgt 29063824  T
Q  209 tgctggaaagtgttactctttatcaccacaaacttcaacttttaccccaaattgagaacaaatcctagcatcttctgcaccattctttgaattaaaatgt 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29063823 tgctggaaagtgttactctttatcaccacaaacttcaacttttacaccaaattgagaacaaatcctagcatcttctgcaccattctttgaattaaaatgt 29063724  T
Q  309 tgttgagactgtttacaatgtgcaatagctccttcaactgaaccttcc 356  Q
    || |||||||||||||||||||||||||||||||||||||||||||||    
T  29063723 tgctgagactgtttacaatgtgcaatagctccttcaactgaaccttcc 29063676  T

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