View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18746_high_9 (Length: 230)
Name: NF18746_high_9
Description: NF18746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18746_high_9 |
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Alignment Details
Target: chr4 (Bit Score: 201; Significance: 1e-110; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 14 - 214
Target Start/End: Complemental strand, 10187590 - 10187390
Alignment:
| Q |
14 |
gcacagaacaccaacattttttaagggccccgaggcaacatgcagaatgcttaataaagaacaaaatgcaggcagaaaaaagtagaataaaaaccacagg |
113 |
Q |
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| T |
10187590 |
gcacagaacaccaacattttttaagggccccgaggcaacatgcagaatgcttaataaagaacaaaatgcaggcagaaaaaagtagaataaaaaccacagg |
10187491 |
T |
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| Q |
114 |
agtagaacgtacatctcggctcgttgtcttcactggatcaatatatttaacgaaattcttggatacaggatggcgtctaacctaaatgaaaaggtagaga |
213 |
Q |
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| T |
10187490 |
agtagaacgtacatctcggctcgttgtcttcactggatcaatatatttaacgaaattcttggatacaggatggcgtctaacctaaatgaaaaggtagaga |
10187391 |
T |
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| Q |
214 |
a |
214 |
Q |
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| T |
10187390 |
a |
10187390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 13 - 91
Target Start/End: Complemental strand, 28933308 - 28933230
Alignment:
| Q |
13 |
agcacagaacaccaacattttttaagggccccgaggcaacatgcagaatgcttaataaagaacaaaatgcaggcagaaa |
91 |
Q |
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| T |
28933308 |
agcacacaacaccaatattttttatggggcctgaggaaacctgcagaatacataatatagaacaaaatgcaggtagaaa |
28933230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 94 - 214
Target Start/End: Original strand, 35120815 - 35120935
Alignment:
| Q |
94 |
agtagaataaaaaccacaggagtagaacgtacatctcggctcgttgtcttcactggatcaatatatttaacgaaattcttggatacaggatggcgtctaa |
193 |
Q |
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| T |
35120815 |
agtagaataaaaacatcaggagtagaatatacctcctggctctttgtcttcactgggtcagtatatttaaagaaacgcttggatgcaggatggcttttca |
35120914 |
T |
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| Q |
194 |
cctaaatgaaaaggtagagaa |
214 |
Q |
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| T |
35120915 |
cctaaatgaaaaggtagagaa |
35120935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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