View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18746_low_14 (Length: 221)
Name: NF18746_low_14
Description: NF18746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18746_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 180; Significance: 2e-97; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 52714289 - 52714089
Alignment:
| Q |
1 |
actttttgtcccatccgttgcctcatcgtnnnnnnnttctaactgtcccacataggtaaaaacttcagcagtaccaattagaaagaattgaggtaacaac |
100 |
Q |
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| T |
52714289 |
actttttgtcccatccgttgcctcatcgtaaaaaaattctaactgtcccacataggtaaaaacttcagcagtaccaattagaaagaattgaggtaacaac |
52714190 |
T |
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| Q |
101 |
caaaacacactcatgctatttggttgcgggtggtgatcgcgtctccttttttcaactaatgcagctgaagccatagcgatgattgagatgaaaagcccaa |
200 |
Q |
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| T |
52714189 |
caaaacacactcatgctatttggttgcgggtggtgatcgcgtctccttttttcaactaatgcagctgaagccatagcgatgattgagatgaaaagcccaa |
52714090 |
T |
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| Q |
201 |
c |
201 |
Q |
| |
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| |
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| T |
52714089 |
c |
52714089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 52723311 - 52723111
Alignment:
| Q |
1 |
actttttgtcccatccgttgcctcatcgtnnnnnnnttctaactgtcccacataggtaaaaacttcagcagtaccaattagaaagaattgaggtaacaac |
100 |
Q |
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||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52723311 |
actttttgtcccatctgttgcctcatcgtaaaaaaattctaactgtcccacataggtaaaaacttcagcagtaccaattagaaagaattgaggtaacaac |
52723212 |
T |
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| Q |
101 |
caaaacacactcatgctatttggttgcgggtggtgatcgcgtctccttttttcaactaatgcagctgaagccatagcgatgattgagatgaaaagcccaa |
200 |
Q |
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| T |
52723211 |
caaaacacactcatgctatttggttgcgggtagtgatcgcgtctccttttttcaactaatgcagctgaagccatagcgatgattgagataaaaagcccaa |
52723112 |
T |
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| Q |
201 |
c |
201 |
Q |
| |
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| T |
52723111 |
c |
52723111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 41 - 201
Target Start/End: Complemental strand, 52699972 - 52699812
Alignment:
| Q |
41 |
aactgtcccacataggtaaaaacttcagcagtaccaattagaaagaattgaggtaacaaccaaaacacactcatgctatttggttgcgggtggtgatcgc |
140 |
Q |
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|||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| || | |||| ||| || | |
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| T |
52699972 |
aactgtcccacataggtaaaaacttcagcactacccattagaaagaattgaggtaacaaccaaaacacactcatgctgttctctcctgggtagtgttccc |
52699873 |
T |
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| Q |
141 |
gtctccttttttcaactaatgcagctgaagccatagcgatgattgagatgaaaagcccaac |
201 |
Q |
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||||| | |||||||| ||||| ||||||||||||||||||||||||| ||||| ||||| |
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| T |
52699872 |
gtctcgtcttttcaaccaatgctgctgaagccatagcgatgattgagacaaaaagtccaac |
52699812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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