View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18746_low_3 (Length: 634)
Name: NF18746_low_3
Description: NF18746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18746_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 567; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 567; E-Value: 0
Query Start/End: Original strand, 36 - 618
Target Start/End: Complemental strand, 14801843 - 14801261
Alignment:
| Q |
36 |
ttaagtaccaggcaaaataccgttatgatcaacaacaaaaattgaatcaaaaccaaagcagaacttgaataaaaattcaatccttatgagattaaatgag |
135 |
Q |
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| T |
14801843 |
ttaagtaccaggcaaaataccgttatgatcaacaacaaaaattgaatcaaaaccaaagcagaacttgaataaaaattcaatccttatgagattaaatgag |
14801744 |
T |
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| Q |
136 |
tcttatgtggctgtgtgatcacaattattgcaaatggagcttcttaaattgtttattattgtaaatggaagcgttttcctaatatgaacaaagtattttc |
235 |
Q |
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| T |
14801743 |
tcttatgtggctgtgtgatcacaattattgcaaatggagcttcttaaattgtttattattgtaaatggaagcgttttcctaatatgaacaaagtattttc |
14801644 |
T |
|
| Q |
236 |
tagcctcattcagcatgagaggcaaaatagtttagatgtccctgaagatccacgcgtgattgttaacgcggttaatggaagaaggttaaatcgtggatcc |
335 |
Q |
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| T |
14801643 |
tagcctcattcagcatgagaggcaaaatagtttagatgtccctgaagatccacgcgtgattgttaacgcggttaatggaagaaggttaaatcgtggatcc |
14801544 |
T |
|
| Q |
336 |
agttgaaactttagtggatctgctgggcgaggagaatgaaattcaacggtgtgctcataatgtggcaaactaggtcacactgtggtcattacctatcgaa |
435 |
Q |
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| T |
14801543 |
agttgaaactttagtggatctgctgggcgaggagaatgaaattcaacggtgtgctcataatgtggcaaactaggtcacactgcggtcattacctatcgaa |
14801444 |
T |
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| Q |
436 |
agcacgtcttccctctaggttttcaattcatgatttctactgtaagtaattgtattgataacagtaaaagaaaaagagagagaaaataaatcatccacat |
535 |
Q |
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| T |
14801443 |
agcacgtcttccctctaggttttcaattcatgatttctactgtaagtaattgtattgataacagtaaaagaaaaagagagagaaactaaatcatccacat |
14801344 |
T |
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| Q |
536 |
acaagagaatgatacaccatcaccacttcatcacaactcggcagaaggaagttcaaagtaggaactgattgaatcatcttcgt |
618 |
Q |
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| T |
14801343 |
acaagagaatggtacaccatcaccaattcatcacaactcggcagaaggaagttcaaagtaggaactgattgaatcatcttcgt |
14801261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 541 - 616
Target Start/End: Complemental strand, 14805070 - 14804995
Alignment:
| Q |
541 |
agaatgatacaccatcaccacttcatcacaactcggcagaaggaagttcaaagtaggaactgattgaatcatcttc |
616 |
Q |
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| T |
14805070 |
agaatgatacaccttcaccgtatcatcacaacgcggtagaaggaagttcaaagtaagaactgatggaattatcttc |
14804995 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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