View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18746_low_4 (Length: 535)
Name: NF18746_low_4
Description: NF18746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18746_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 504; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 504; E-Value: 0
Query Start/End: Original strand, 20 - 523
Target Start/End: Original strand, 3238489 - 3238992
Alignment:
| Q |
20 |
tggtgagtgtcacaggtcacagctcgatcgaaactgtgctgtatatgtatacggtaacccttcattttgagaaatggcgagtgtcacagctcgatcaacc |
119 |
Q |
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| T |
3238489 |
tggtgagtgtcacaggtcacagctcgatcgaaactgtgctgtatatgtatacggtaacccttcattttgagaaatggcgagtgtcacagctcgatcaacc |
3238588 |
T |
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| Q |
120 |
tgtaattgattgagaattaccgtatacatatatagcacagtttcttcttaaagatcagtacatgatcaagttgttacatcaggaaattgaaagcttaacc |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3238589 |
tgtaattgattgagaattaccgtatacatatatagcacagtttcttcttaaagatcagtacatgatcaagttgttacatcaggaaattgaaagcttaacc |
3238688 |
T |
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| Q |
220 |
gataatgtaatgatcttcatactttgtaagttaatatgattctttctcaatagtgttggagttgaagctgtaagatttatgagatggagaatcatcactg |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3238689 |
gataatgtaatgatcttcatactttgtaagttaatatgattctttctcaatagtgttggagttgaagctgtaagatttatgagatggagaatcatcactg |
3238788 |
T |
|
| Q |
320 |
aaacagtaaagcaattgagaagaaatccccagggacgattgagcaattcacatggacgattaataacttctccaaatgtgattctaagacgtactcagaa |
419 |
Q |
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| T |
3238789 |
aaacagtaaagcaattgagaagaaatccccagggacgattgagcaattcacatggacgattaataacttctccaaatgtgattctaagacgtactcagaa |
3238888 |
T |
|
| Q |
420 |
agtttcttcctcaaaggctattcatgctctgagtaaattccaatttactacatacacatatcatcattgtcatgtgctcaatttttgtatgttttcgata |
519 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3238889 |
agtttcttcctcaaaggctattcatgctctgagtaaattccaatttactacatacacatatcatcattgtcatgtgctcaatttttgtatgttttcgata |
3238988 |
T |
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| Q |
520 |
tttt |
523 |
Q |
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|||| |
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| T |
3238989 |
tttt |
3238992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 345 - 418
Target Start/End: Original strand, 3242949 - 3243022
Alignment:
| Q |
345 |
tccccagggacgattgagcaattcacatggacgattaataacttctccaaatgtgattctaagacgtactcaga |
418 |
Q |
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|||||| ||||||||||||||||||||||||||||||| |||||||| || ||||||||| ||| ||||||||| |
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| T |
3242949 |
tccccatggacgattgagcaattcacatggacgattaagaacttctctaagtgtgattctcagatgtactcaga |
3243022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 239 - 290
Target Start/End: Original strand, 3242864 - 3242915
Alignment:
| Q |
239 |
tactttgtaagttaatatgattctttctcaatagtgttggagttgaagctgt |
290 |
Q |
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|||||| ||| ||||||| ||||||||||||| ||||| ||||||||||||| |
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| T |
3242864 |
tactttataaattaatataattctttctcaatggtgttagagttgaagctgt |
3242915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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