View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18746_low_6 (Length: 429)
Name: NF18746_low_6
Description: NF18746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18746_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 411; Significance: 0; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 1 - 423
Target Start/End: Original strand, 3208827 - 3209249
Alignment:
| Q |
1 |
tgccatgccaattgcagtaccattagcattaccaaagacattagcaccttgcacgggccttccagcagccgtgctggctgtgtgagttccatggccaaca |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
3208827 |
tgccatgccaattgcagtaccattagcattaccaaagacattagcaccttgcacgggccttccagcggccgtgctggctgtgtgagttccatggccaaca |
3208926 |
T |
|
| Q |
101 |
tcatcgtatggaagggatgaatttacaaaggtccttgctccaatgatcttcttgttacaaatcctctcccctgtgaattcacaatggccattccattttg |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3208927 |
tcatcgtatggaagggatgaatttacaaaggtccttgctccaatgatcttcttgttacaaatcctctcccctgtgaattcacaatggccattccattttg |
3209026 |
T |
|
| Q |
201 |
caggtggtgaaggcatcccctcatcagaaaaggaaggatgtgagagggttattcctgtgtcgacgattccaattatgatccctttaccttgattggaatt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3209027 |
caggtggtgaaggcatcccctcatcagaaaaggaaggatgtgagagggttattcctgtgtcgacgattccaattatgatccctttaccttgattggaatt |
3209126 |
T |
|
| Q |
301 |
tccccacaagtcttgattttgttgtaaccccaagaagcttgaagtgtgagttgtgtgtaatgaatacattttctccagccgagttgatagaacctcctca |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3209127 |
tccccacaagtcttgattttgttgtaaccccaagaagcttgaagtgtgagttgtgtgtaatgaatacattttctccagccgagttgatagaacctcctca |
3209226 |
T |
|
| Q |
401 |
ttctcttctatagcctttgcttc |
423 |
Q |
| |
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|||||||||| |||||| ||||| |
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| T |
3209227 |
ttctcttctagagccttggcttc |
3209249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 1 - 424
Target Start/End: Original strand, 3202853 - 3203276
Alignment:
| Q |
1 |
tgccatgccaattgcagtaccattagcattaccaaagacattagcaccttgcacgggccttccagcagccgtgctggctgtgtgagttccatggccaaca |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| ||||||||||| ||||||||||| ||||||||| |
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| T |
3202853 |
tgccatgccaattgcagtaccattggcattaccaaagacattagcacctttcacgggccttccagcggccgtgctggccgtgtgagttccgtggccaaca |
3202952 |
T |
|
| Q |
101 |
tcatcgtatggaagggatgaatttacaaaggtccttgctccaatgatcttcttgttacaaatcctctcccctgtgaattcacaatggccattccattttg |
200 |
Q |
| |
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| |||||||||||||||||||||||| | | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3202953 |
taatcgtatggaagggatgaatttacgatgttccttgctccaatgatcttcttgttacaaatcctctcccctgtgaattcacaatggccattccattttg |
3203052 |
T |
|
| Q |
201 |
caggtggtgaaggcatcccctcatcagaaaaggaaggatgtgagagggttattcctgtgtcgacgattccaattatgatccctttaccttgattggaatt |
300 |
Q |
| |
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||||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| |
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| T |
3203053 |
caggtggagaaggcattccctcatcggaaaaggaaggatgtgagagggttattcctgtgtccagcattccaattatgatccctttaccttgattggaatt |
3203152 |
T |
|
| Q |
301 |
tccccacaagtcttgattttgttgtaaccccaagaagcttgaagtgtgagttgtgtgtaatgaatacattttctccagccgagttgatagaacctcctca |
400 |
Q |
| |
|
||||||||| |||||||| ||||| |||||||||||||||| ||||||||||||||||||||| | || || || | ||| |||| |||||||||||| |
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| T |
3203153 |
tccccacaattcttgattctgttgcaaccccaagaagcttggagtgtgagttgtgtgtaatgagaaaatcttttctggtcgaattgacagaacctcctca |
3203252 |
T |
|
| Q |
401 |
ttctcttctatagcctttgcttct |
424 |
Q |
| |
|
|||||||||| | |||| |||||| |
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|
| T |
3203253 |
ttctcttctagaaccttggcttct |
3203276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 173; E-Value: 7e-93
Query Start/End: Original strand, 1 - 424
Target Start/End: Original strand, 3216766 - 3217198
Alignment:
| Q |
1 |
tgccatgccaattgcagtaccattagcattaccaaagacattagcaccttgcacgggccttccagcagccgtgctggctgtgtgagttccatggccaaca |
100 |
Q |
| |
|
||||||||| |||| ||||| ||||| || || |||||||| || || || || |||||||||||||||||||||| ||||||||||| ||||||||| |
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| T |
3216766 |
tgccatgcctgttgccgtacctttagcgttgccgaagacattggccccctgtacaagccttccagcagccgtgctggccgtgtgagttccgtggccaaca |
3216865 |
T |
|
| Q |
101 |
tcatcgtatggaagggatgaattt---------acaaaggtccttgctccaatgatcttcttgttacaaatcctctcccctgtgaattcacaatggccat |
191 |
Q |
| |
|
|||||| ||||||| ||| ||||| || ||| ||||||||||||||| |||||||||||||||||| ||||||||||||||||| ||||||| |
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| T |
3216866 |
tcatcgaatggaagagataaatttgtgtctgtgacgaagttccttgctccaatgagcttcttgttacaaatcctttcccctgtgaattcacagtggccat |
3216965 |
T |
|
| Q |
192 |
tccattttgcaggtggtgaaggcatcccctcatcagaaaaggaaggatgtgagagggttattcctgtgtcgacgattccaattatgatccctttaccttg |
291 |
Q |
| |
|
|||||||||||||||| || ||||| ||||| ||||||||||||||||| ||||||| |||||||||||| | |||||||||||||||||||||||| | |
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| T |
3216966 |
tccattttgcaggtggagagggcattccctcgtcagaaaaggaaggatgggagagggatattcctgtgtccaggattccaattatgatccctttaccgag |
3217065 |
T |
|
| Q |
292 |
attggaatttccccacaagtcttgattttgttgtaaccccaagaagcttgaagtgtgagttgtgtgtaatgaatacattttctccagccgagttgataga |
391 |
Q |
| |
|
|||||||||| ||| || ||||| | ||||| |||||||||||||||| ||||||||||| |||||||| || || || | ||| |||||||| |
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|
| T |
3217066 |
attggaatttatccataatccttgactctgttgcaaccccaagaagcttggtgtgtgagttgtatgtaatgagaggatgttttctggtcgaattgataga |
3217165 |
T |
|
| Q |
392 |
acctcctcattctcttctatagcctttgcttct |
424 |
Q |
| |
|
|||||||| |||||||||| |||||| |||||| |
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|
| T |
3217166 |
acctcctccttctcttctagagccttggcttct |
3217198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 173 - 209
Target Start/End: Original strand, 3232106 - 3232142
Alignment:
| Q |
173 |
gtgaattcacaatggccattccattttgcaggtggtg |
209 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||| |
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|
| T |
3232106 |
gtgaattcacaatggcctttccattttgcaggtggtg |
3232142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 174 - 207
Target Start/End: Complemental strand, 3177934 - 3177901
Alignment:
| Q |
174 |
tgaattcacaatggccattccattttgcaggtgg |
207 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||| |
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|
| T |
3177934 |
tgaattcacaatggcctttccattttgcaggtgg |
3177901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 174 - 207
Target Start/End: Original strand, 3240906 - 3240939
Alignment:
| Q |
174 |
tgaattcacaatggccattccattttgcaggtgg |
207 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||| |
|
|
| T |
3240906 |
tgaattcacaatggcctttccattttgcaggtgg |
3240939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 173 - 209
Target Start/End: Original strand, 3221873 - 3221909
Alignment:
| Q |
173 |
gtgaattcacaatggccattccattttgcaggtggtg |
209 |
Q |
| |
|
|||||||| |||||||| ||||||||||||||||||| |
|
|
| T |
3221873 |
gtgaattcgcaatggcctttccattttgcaggtggtg |
3221909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 173 - 209
Target Start/End: Original strand, 3226855 - 3226891
Alignment:
| Q |
173 |
gtgaattcacaatggccattccattttgcaggtggtg |
209 |
Q |
| |
|
|||||||||||||| || ||||||||||||||||||| |
|
|
| T |
3226855 |
gtgaattcacaatgacctttccattttgcaggtggtg |
3226891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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