View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18746_low_7 (Length: 389)
Name: NF18746_low_7
Description: NF18746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18746_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 99 - 374
Target Start/End: Original strand, 26914303 - 26914584
Alignment:
| Q |
99 |
gcatcaacttttccatgagccattgcaccaacctgaagaagcagacaacggtcgatcaagaaataacaaaaataatcccatctataaagtgtatataaag |
198 |
Q |
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| T |
26914303 |
gcatcaacttttccatgagccattgcatcaacctgaagaagcagacaacagtcgatcaagaaataacaaaaatgatcccatctgtaaagtgtatataaag |
26914402 |
T |
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| Q |
199 |
acttgcaaaagcttaccacaaatacaagactcttat------cacagttagcagcaacaaagtcgcttattttaactgtctttggcgagttaaacgaaag |
292 |
Q |
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| T |
26914403 |
acttgcaaaagcttaccacaaatacaagactcttatgattatcacagttagcagcaacaaagtcgtttattttaactgcctttggcgagttaaacgaaag |
26914502 |
T |
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| Q |
293 |
acctacaacagcataagagtgtcacgtcataagaaaacgcttcacagaagacattgacattctaccattgcctagttataat |
374 |
Q |
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| T |
26914503 |
acctacaacagcataagagtgtcacgtcataagaaaacgcttcacagaagacattgacattctaccattgcctagttataat |
26914584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 8 - 130
Target Start/End: Original strand, 26914188 - 26914310
Alignment:
| Q |
8 |
atcatcaacaaacaatacagcaaaacttggatttgaaataaacacaaaattgttcaagtaataacctgatatgaaatcatcaatgtagtcagcatcaact |
107 |
Q |
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| T |
26914188 |
atcattaacaaacaatacagcaaaacttggatttgaaataaacacaaaattgttcaagtaataacctgatatgaaatcatcaatgtagtcagcatcaact |
26914287 |
T |
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| Q |
108 |
tttccatgagccattgcaccaac |
130 |
Q |
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| T |
26914288 |
tttccatgagccattgcatcaac |
26914310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 168; Significance: 6e-90; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 70 - 322
Target Start/End: Original strand, 51182035 - 51182293
Alignment:
| Q |
70 |
aacctgatatgaaatcatcaatgtagtcagcatcaacttttccatgagccattgcaccaacctgaagaagcagacaacggtcgatcaagaaataacaaaa |
169 |
Q |
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| T |
51182035 |
aacctggtatgaaatcatcaatgtaatcggcatcaatatttccatgaggcattgcaccaacctgaagaagcagacaacattcaatcaagaaataacaaaa |
51182134 |
T |
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| Q |
170 |
ataatcccatctataaagtgta------tataaagacttgcaaaagcttaccacaaatacaagactcttatcacagttagcagcaacaaagtcgcttatt |
263 |
Q |
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| T |
51182135 |
atgatcccatctgtaaagtgtaatattatataaagacttgcaaaagcttaccacaaatacaagattcttatcacagttagcagcaacgaagtctcttatt |
51182234 |
T |
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| Q |
264 |
ttaactgtctttggcgagttaaacgaaagacctacaacagcataagagtgtcacgtcat |
322 |
Q |
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| T |
51182235 |
ttaactgtctttggcgagttaaatgaaagacctacaacagcataagagtttgacgtcat |
51182293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 52
Target Start/End: Original strand, 51181999 - 51182033
Alignment:
| Q |
18 |
aacaatacagcaaaacttggatttgaaataaacac |
52 |
Q |
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| T |
51181999 |
aacaatacagcaaaacttggatttgaaataaacac |
51182033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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