View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18747_high_1 (Length: 781)
Name: NF18747_high_1
Description: NF18747
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18747_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 584; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 584; E-Value: 0
Query Start/End: Original strand, 9 - 764
Target Start/End: Original strand, 24300268 - 24301031
Alignment:
| Q |
9 |
gattatactgtattttaaaaagaagtattggactgatgggagcagtttcatctagctcaattgtttattgtcagcttgctggatttggagtttagatctc |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| ||||||||||||| |
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| T |
24300268 |
gattatactgtattttaaaaagaagtattggactgatgggagcagtttcatctagctctattgtttattgtcagcttgctgtatttagagtttagatctc |
24300367 |
T |
|
| Q |
109 |
ttggtttatgttgcaagttttcgtagctactctcattgaatgtaggagtaatttcatgggacctttagaagtgcgattgttgattgggcggggtggtgct |
208 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||| |
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| T |
24300368 |
ttggtttatgttgcaagttttcgtagctactctcattgaatgtaggagtaatttcatgggaccttcagaagtgcgattggtgattgggcggggtggtgct |
24300467 |
T |
|
| Q |
209 |
tggtttgatcttgttattttaagggggagtgtgctattttgctacatgtttggcaaatagcattgtatttgacttgtgta--------ttagtttttaat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || |
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| T |
24300468 |
tggtttgatcttgttattttaagggggagtgtgctattttgctacatgtttggcaaatagcattgtatttgacttgtgtacttgtgtattagtttttgat |
24300567 |
T |
|
| Q |
301 |
ctattctttgctctccttgtgcttggggtatcctatcaatctattttgcttcttnnnnnnnnntactattaggaaagtagttctttattgtatatttctt |
400 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| |
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| T |
24300568 |
ctattctttgctctccttgtgcttggggtatcctatcaatctattttgcttcttaaaaaaaaatactaataggaaagtagttctttattgtatatttctt |
24300667 |
T |
|
| Q |
401 |
cttgattaaagcatattattgacatgagcatgaaacaattagacgtttcaccacaagttcatacaaaaacattttgaaactcgtacaagttaaatttgga |
500 |
Q |
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| T |
24300668 |
cttgattaaagcatattattgacatgattatgaaacaattagaagtatcaccactgattcatacaaaaacattttgaaactcgtacaatttacatttgga |
24300767 |
T |
|
| Q |
501 |
gaaacaacgatgagaaagacaataatgacaaacacctttccccactagcaaagtaatatttcaaacatgtgtcctataatcatgagttattcatgttcta |
600 |
Q |
| |
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||||||||| ||||||||||| ||||||| | ||||| | |||| |||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
24300768 |
aaaacaacgacgagaaagacaacaatgacataagccttttctcactggcaaagtaatatttcagacatgtgtcctataatcatgagttattcatgttcta |
24300867 |
T |
|
| Q |
601 |
tggaacctattacaagtccaatgtaccataagcacaaatcacttgctaaaagtatatgaacatgaaactttaaaaatatatttttatattttctgtctta |
700 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
24300868 |
tggaacctattacaagtccaatgtaccgtaagcacaaatcacttgctaaaagtataggaacatgaaactttaaaaatatattttaatattttctgtctta |
24300967 |
T |
|
| Q |
701 |
caacacaacatgtgctggtgcaaatcctaaagctttgtttgtgagttgagttttggaagggaaa |
764 |
Q |
| |
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||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24300968 |
caacaaaacatgtgctggtacaaatcctaaagctttgtttgtgagttgagttttggaagggaaa |
24301031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 370 - 615
Target Start/End: Original strand, 25294797 - 25295043
Alignment:
| Q |
370 |
taggaaagtagttctttattgtatatttcttcttgattaaagcatattattgacatgagcatgaaacaattagacgtttcaccacaagttcatacaaaaa |
469 |
Q |
| |
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|||||||| |||||||| ||| | ||| ||||||||||||||||||||||||||||| ||||||||||||| || ||||||||| |||||| |||||| |
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| T |
25294797 |
taggaaagcagttctttcttgaacattccttcttgattaaagcatattattgacatgggcatgaaacaattcgagacttcaccacaggttcatgcaaaaa |
25294896 |
T |
|
| Q |
470 |
cattttgaaactcgtacaagttaaatt-tggagaaacaacgatgagaaagacaataatgacaaacacctttccccactagcaaagtaatatttcaaacat |
568 |
Q |
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| T |
25294897 |
cattttgaaactcatacaattaacattacggataaacaacaacgagaaagacaacaatgacaaaagccttttcccacttgcagtgtataatttcaaacaa |
25294996 |
T |
|
| Q |
569 |
gtgtcctataatca-tgagttattcatgttctatggaacctattacaa |
615 |
Q |
| |
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| T |
25294997 |
ttgtcctataaccattgacttattcatattctat-gaaactattacaa |
25295043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 58; Significance: 5e-24; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 202 - 311
Target Start/End: Complemental strand, 3654131 - 3654022
Alignment:
| Q |
202 |
tggtgcttggtttgatcttgttattttaagggggagtgtgctattttgctacatgtttggcaaatagcattgtatttgacttgtgtattagtttttaatc |
301 |
Q |
| |
|
|||||||||| |||||||||||||||||| ||||| |||||||||| ||||||||||| | | | |||||||| |||||||||||||||||||| ||| |
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| T |
3654131 |
tggtgcttggactgatcttgttattttaagcaggagtctgctattttgttacatgtttgggagaaaacattgtatgtgacttgtgtattagtttttgatc |
3654032 |
T |
|
| Q |
302 |
tattctttgc |
311 |
Q |
| |
|
|||| ||||| |
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| T |
3654031 |
tattttttgc |
3654022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 202 - 327
Target Start/End: Original strand, 3675059 - 3675191
Alignment:
| Q |
202 |
tggtgcttggtttgatcttgttattttaagggggag---tgtgctattttgcta----catgtttggcaaatagcattgtatttgacttgtgtattagtt |
294 |
Q |
| |
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|||||||||| ||||||||||||||| ||| ||| | ||||||||||||| |||||||||||||||||||||||| ||| |||| |||||||| |
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| T |
3675059 |
tggtgcttggactgatcttgttatttttaggaagagtcttttgctattttgctacatgcatgtttggcaaatagcattgtatgtgatttgtttattagtt |
3675158 |
T |
|
| Q |
295 |
tttaatctattctttgctctccttgtgcttggg |
327 |
Q |
| |
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||| ||||||| ||| | || |||||||||||| |
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| T |
3675159 |
tttgatctatttttttcacttcttgtgcttggg |
3675191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 202 - 263
Target Start/End: Original strand, 3701289 - 3701350
Alignment:
| Q |
202 |
tggtgcttggtttgatcttgttattttaagggggagtgtgctattttgctacatgtttggca |
263 |
Q |
| |
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|||||||||| ||||||||||||||||||| ||||| ||||| |||||||||||||||||| |
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| T |
3701289 |
tggtgcttggactgatcttgttattttaaggaggagtatgctactttgctacatgtttggca |
3701350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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