View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18747_high_10 (Length: 489)
Name: NF18747_high_10
Description: NF18747
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18747_high_10 |
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Alignment Details
Target: chr8 (Bit Score: 390; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 18 - 483
Target Start/End: Original strand, 34581920 - 34582385
Alignment:
| Q |
18 |
cagtgtcgaatgacgatgactcacgatgagtccaatccttctcgctcatagctttaaaccagtcaatcagaaccaaccattactctcatacaagctcaag |
117 |
Q |
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| T |
34581920 |
cagtgtcgaatgacgataactcacgatgagtccaatccttctcgctcatagctttaaaccagtcaattagaaccaaacattactctcatacaagctcaag |
34582019 |
T |
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| Q |
118 |
ttcaacacatagtatcaacagccaggttgaatcacaatgacatcaagttcaatcacaggagcaactcacttttaataagtgcaatccatagtttacaaca |
217 |
Q |
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| T |
34582020 |
ttcaacacatagtatcaacagccaggttgaatcacaatgacatcaagttcaatcacaggagcaactcacttttagtaagtgcaatccatagtttacaaca |
34582119 |
T |
|
| Q |
218 |
agtctgatggaagaacaaactttgctgaatgttgatggaattatgcttcaaatctagtggctatcaaaataatttttgtaattgtgtttttacacttgaa |
317 |
Q |
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| T |
34582120 |
agtctgatggaagaacaaactttgctgaatgttgatggaattatgcttcaaatctagtggctatcaaaatattttttgtaattgtgtttttacacttgaa |
34582219 |
T |
|
| Q |
318 |
gggaactcttttattggctcatgccaaatgtttattttccacccatctcatattcccatgtctcccttgaatattacctgtgaaaagaccaatgcatata |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
34582220 |
gggaactcttttattggctcatgccaaatgtttattttcctcccatctcatattcccatgtctcccttgactattacctgtgaaaagaccaatgcatata |
34582319 |
T |
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| Q |
418 |
tagggagtaaannnnnnnnnnnnnnnngaataagagaataacattgttttaggcttcctttgcttc |
483 |
Q |
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| T |
34582320 |
tagggagtaaattttattttattttttgaataagagaataacattgttttaggcttcctttgcttc |
34582385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 119 - 185
Target Start/End: Original strand, 34585708 - 34585774
Alignment:
| Q |
119 |
tcaacacatagtatcaacagccaggttgaatcacaatgacatcaagttcaatcacaggagcaactca |
185 |
Q |
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||||||||||||||||| |||||| |||||||| |||||||||| ||||| ||||||||||||||| |
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| T |
34585708 |
tcaacacatagtatcaagagccagcttgaatcaagatgacatcaacttcaaccacaggagcaactca |
34585774 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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