View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18747_high_11 (Length: 479)

Name: NF18747_high_11
Description: NF18747
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18747_high_11
NF18747_high_11
[»] chr4 (7 HSPs)
chr4 (12-152)||(6049813-6049953)
chr4 (38-152)||(50183179-50183293)
chr4 (52-152)||(46577486-46577587)
chr4 (52-152)||(13388059-13388157)
chr4 (113-151)||(33114072-33114110)
chr4 (97-152)||(23638260-23638316)
chr4 (120-152)||(56295223-56295255)
[»] chr2 (6 HSPs)
chr2 (149-461)||(21885600-21885915)
chr2 (59-152)||(37488493-37488586)
chr2 (67-152)||(44944053-44944137)
chr2 (92-152)||(13913460-13913520)
chr2 (97-142)||(42112375-42112420)
chr2 (104-152)||(30785643-30785691)
[»] chr1 (9 HSPs)
chr1 (12-121)||(13265535-13265644)
chr1 (38-152)||(17174239-17174353)
chr1 (97-152)||(36681515-36681570)
chr1 (97-152)||(51097502-51097557)
chr1 (120-158)||(28762424-28762462)
chr1 (119-152)||(2070776-2070809)
chr1 (119-152)||(2071498-2071531)
chr1 (96-152)||(19534782-19534838)
chr1 (97-152)||(31415216-31415272)
[»] chr3 (18 HSPs)
chr3 (52-152)||(36502345-36502444)
chr3 (63-152)||(35653804-35653892)
chr3 (97-152)||(35420347-35420402)
chr3 (67-152)||(35653105-35653189)
chr3 (97-152)||(35419377-35419432)
chr3 (52-152)||(17604778-17604878)
chr3 (92-152)||(25080803-25080863)
chr3 (92-152)||(25081546-25081606)
chr3 (97-152)||(55337592-55337648)
chr3 (97-152)||(1489653-1489708)
chr3 (121-152)||(31595124-31595155)
chr3 (121-152)||(31595888-31595919)
chr3 (121-152)||(49308117-49308148)
chr3 (121-152)||(49308865-49308896)
chr3 (97-152)||(55336826-55336881)
chr3 (115-152)||(34832027-34832064)
chr3 (119-152)||(48058264-48058297)
chr3 (120-152)||(42878411-42878443)
[»] chr7 (3 HSPs)
chr7 (67-152)||(3772585-3772669)
chr7 (59-152)||(11745777-11745870)
chr7 (115-152)||(12293453-12293490)
[»] chr5 (3 HSPs)
chr5 (52-152)||(12255850-12255950)
chr5 (118-152)||(10470871-10470905)
chr5 (119-152)||(33574052-33574085)
[»] chr6 (1 HSPs)
chr6 (97-152)||(30321294-30321349)
[»] chr8 (6 HSPs)
chr8 (118-152)||(20105100-20105134)
chr8 (52-109)||(5664999-5665056)
chr8 (63-115)||(5664366-5664418)
chr8 (97-152)||(39320920-39320975)
chr8 (98-152)||(26185916-26185970)
chr8 (120-152)||(45107271-45107303)


Alignment Details
Target: chr4 (Bit Score: 141; Significance: 1e-73; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 12 - 152
Target Start/End: Complemental strand, 6049953 - 6049813
Alignment:
Q  12 tgagatgaaggagacataagggttatgatgcagctattgcaattgaataccaccgtaaagattaatccaaaggtcagaattcaaccctctcatctctcac 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6049953 tgagatgaaggagacataagggttatgatgcagctattgcaattgaataccaccgtaaagattaatccaaaggtcagaattcaaccctctcatctctcac 6049854  T
Q  112 aatagttagtcctctcacttgatatgccctctatatatata 152  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  6049853 aatagttagtcctctcacttgatatgccctctatatatata 6049813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 38 - 152
Target Start/End: Complemental strand, 50183293 - 50183179
Alignment:
Q  38 gatgcagctattgcaattgaataccaccgtaaagattaatccaaaggtcagaattcaaccctctcatctctcacaatagttagtcctctcacttgatatg 137  Q
    ||||||| ||||  |||| |||||||  |||||||||||||||| ||  || |||||||||||||| |||||| ||||   || ||||||||||||||||    
T  50183293 gatgcagttattaaaattcaataccattgtaaagattaatccaagggctaggattcaaccctctcacctctcataataaaaagccctctcacttgatatg 50183194  T
Q  138 ccctctatatatata 152  Q
    |||| ||||||||||    
T  50183193 ccctatatatatata 50183179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 52 - 152
Target Start/End: Complemental strand, 46577587 - 46577486
Alignment:
Q  52 aattgaataccaccgtaaagattaatccaaaggtcagaattcaaccctctcatctctcacaatagttagtcctctcacttgatatgccctc-tatatata 150  Q
    |||| |||||||  ||||||||||||| || ||| || |||||||||||||| |||||| ||||   ||  |||||||||||||||||||| ||||||||    
T  46577587 aattcaataccatggtaaagattaatctaagggttaggattcaaccctctcacctctcataataaaaagcactctcacttgatatgccctcatatatata 46577488  T
Q  151 ta 152  Q
    ||    
T  46577487 ta 46577486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 52 - 152
Target Start/End: Complemental strand, 13388157 - 13388059
Alignment:
Q  52 aattgaataccaccgtaaagattaatccaaaggtcagaattcaaccctctcatctctcacaatagttagtcctctcacttgatatgccctctatatatat 151  Q
    |||| ||||||||| |||||||||||||||||| ||  ||| ||| ||||||  ||||||||||   | ||||||||||||||||| | | |||||||||    
T  13388157 aattaaataccaccataaagattaatccaaaggccactatttaacactctca--tctcacaataaaaaatcctctcacttgatatggcatatatatatat 13388060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 113 - 151
Target Start/End: Complemental strand, 33114110 - 33114072
Alignment:
Q  113 atagttagtcctctcacttgatatgccctctatatatat 151  Q
    ||||||| ||||||||||||||||| |||||||||||||    
T  33114110 atagttactcctctcacttgatatgtcctctatatatat 33114072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 97 - 152
Target Start/End: Original strand, 23638260 - 23638316
Alignment:
Q  97 cctctcatctctcacaata-gttagtcctctcacttgatatgccctctatatatata 152  Q
    ||||||| ||||||||||| | || |||||||||||||||  |||||||||||||||    
T  23638260 cctctcacctctcacaataagatactcctctcacttgatacaccctctatatatata 23638316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 120 - 152
Target Start/End: Complemental strand, 56295255 - 56295223
Alignment:
Q  120 gtcctctcacttgatatgccctctatatatata 152  Q
    |||||||||||||||||||||| ||||||||||    
T  56295255 gtcctctcacttgatatgccctatatatatata 56295223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 131; Significance: 9e-68; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 131; E-Value: 9e-68
Query Start/End: Original strand, 149 - 461
Target Start/End: Original strand, 21885600 - 21885915
Alignment:
Q  149 tatagattaatattcttaactctaatatcannnnnnnnggtgtgttaaatcatcaattaaaaaagtctcattatactaggctctgccctctttttgtacc 248  Q
    |||||||||||||||||||||||||| ||         ||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||    
T  21885600 tatagattaatattcttaactctaatttctctttgtttggtgtgttaaatcatcaattaaaaaaggctcattatactgggctctgccctctttttgtacc 21885699  T
Q  249 cnnnnnnnnt-tctcattattgaaacatttgtcaattaattaannnnnnncattcatctctctttgtcttactattatatagtaatcataaannnnnnnn 347  Q
               |||||||||||||||||||||| |||||||||       |||||||||||||||||||||||||||||||||||||||||             
T  21885700 aaaaagaaaagtctcattattgaaacatttgtcgattaattaatttttttcattcatctctctttgtcttactattatatagtaatcataatttttttaa 21885799  T
Q  348 nnnnnnn--atgttaataaagtttgtatttaatgttgagttcctcaaagagtcttttaataaacaaagttatctcagagaacaaccaaaacgataattaa 445  Q
             |||||||||||||||||||||||||||||||||||||| || |||||||||||||||| ||||||| |||||||||||||| |||||||||    
T  21885800 ctttttttcatgttaataaagtttgtatttaatgttgagttcctcaaggaatcttttaataaacaaatttatctcggagaacaaccaaaaagataattaa 21885899  T
Q  446 aaacttgatgaaagac 461  Q
    ||||||||||||||||    
T  21885900 aaacttgatgaaagac 21885915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 59 - 152
Target Start/End: Original strand, 37488493 - 37488586
Alignment:
Q  59 taccaccgtaaagattaatccaaaggtcagaattcaaccctctcatctctcacaatagttagtcctctcacttgatatgccctctatatatata 152  Q
    |||||||||||||||| |||||| |||||  ||| ||  |||||| |||||||||||   | ||||||||||| ||||| ||| ||||||||||    
T  37488493 taccaccgtaaagattcatccaagggtcatgatttaagtctctcacctctcacaataaaaactcctctcactttatatgacctatatatatata 37488586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 67 - 152
Target Start/End: Original strand, 44944053 - 44944137
Alignment:
Q  67 taaagattaatccaaaggtcagaattcaaccctctcatctctcacaatagttagtcctctcacttgatatgccctctatatatata 152  Q
    |||| ||||||| || |||||| ||  ||||||||||||||||||||||   |  | |||||||||||||||||||||||||||||    
T  44944053 taaaaattaatctaatggtcaggatctaaccctctcatctctcacaataaaaaa-catctcacttgatatgccctctatatatata 44944137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 92 - 152
Target Start/End: Original strand, 13913460 - 13913520
Alignment:
Q  92 tcaaccctctcatctctcacaatagttagtcctctcacttgatatgccctctatatatata 152  Q
    |||||||||||||||||||  |||    |||||||||||||||||||||| ||||||||||    
T  13913460 tcaaccctctcatctctcattataagatgtcctctcacttgatatgccctatatatatata 13913520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 97 - 142
Target Start/End: Original strand, 42112375 - 42112420
Alignment:
Q  97 cctctcatctctcacaatagttagtcctctcacttgatatgccctc 142  Q
    ||||||||||||||| |||   ||||||||||||||||||||||||    
T  42112375 cctctcatctctcactataagaagtcctctcacttgatatgccctc 42112420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 104 - 152
Target Start/End: Original strand, 30785643 - 30785691
Alignment:
Q  104 tctctcacaatagttagtcctctcacttgatatgccctctatatatata 152  Q
    ||||||||||||  || ||||||||||||||||| ||| ||||||||||    
T  30785643 tctctcacaataaatactcctctcacttgatatgtcctatatatatata 30785691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 90; Significance: 3e-43; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 12 - 121
Target Start/End: Complemental strand, 13265644 - 13265535
Alignment:
Q  12 tgagatgaaggagacataagggttatgatgcagctattgcaattgaataccaccgtaaagattaatccaaaggtcagaattcaaccctctcatctctcac 111  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||  ||||||||||||||||||| ||||||||||||||||||||||||     
T  13265644 tgagatgaaggagacataaggtttatgatgcagctattgcaattgaataccacattaaagattaatccaaaggtgagaattcaaccctctcatctctcat 13265545  T
Q  112 aatagttagt 121  Q
    ||||||||||    
T  13265544 aatagttagt 13265535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 38 - 152
Target Start/End: Original strand, 17174239 - 17174353
Alignment:
Q  38 gatgcagctattgcaattgaataccaccgtaaagattaatccaaaggtcagaattcaaccctctcatctctcacaatagttagtcctctcacttgatatg 137  Q
    ||||||| ||||  |||| |||||||  ||||| |||||||||| ||  || |||||||||||||| |||||||||||   ||  || ||||||||||||    
T  17174239 gatgcagttattaaaattcaataccatggtaaatattaatccaatggctaggattcaaccctctcacctctcacaataaaaagctctatcacttgatatg 17174338  T
Q  138 ccctctatatatata 152  Q
    ||| |||||||||||    
T  17174339 ccccctatatatata 17174353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 97 - 152
Target Start/End: Complemental strand, 36681570 - 36681515
Alignment:
Q  97 cctctcatctctcacaatagttagtcctctcacttgatatgccctctatatatata 152  Q
    ||||||||||||||| |||   | ||||||||||||||||| ||||||||||||||    
T  36681570 cctctcatctctcactataacaactcctctcacttgatatgtcctctatatatata 36681515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 97 - 152
Target Start/End: Complemental strand, 51097557 - 51097502
Alignment:
Q  97 cctctcatctctcacaatagttagtcctctcacttgatatgccctctatatatata 152  Q
    ||||||||||||||  |||  || ||||||||||||||||| ||||||||||||||    
T  51097557 cctctcatctctcattataactactcctctcacttgatatgtcctctatatatata 51097502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 120 - 158
Target Start/End: Complemental strand, 28762462 - 28762424
Alignment:
Q  120 gtcctctcacttgatatgccctctatatatatagattaa 158  Q
    ||||||||||||||||  |||||||||||||||||||||    
T  28762462 gtcctctcacttgatagaccctctatatatatagattaa 28762424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 119 - 152
Target Start/End: Complemental strand, 2070809 - 2070776
Alignment:
Q  119 agtcctctcacttgatatgccctctatatatata 152  Q
    |||| |||||||||||||||||||||||||||||    
T  2070809 agtcttctcacttgatatgccctctatatatata 2070776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 119 - 152
Target Start/End: Original strand, 2071498 - 2071531
Alignment:
Q  119 agtcctctcacttgatatgccctctatatatata 152  Q
    ||||||||||||||||||||||| ||||||||||    
T  2071498 agtcctctcacttgatatgccctatatatatata 2071531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 96 - 152
Target Start/End: Original strand, 19534782 - 19534838
Alignment:
Q  96 ccctctcatctctcacaatagttagtcctctcacttgatatgccctctatatatata 152  Q
    |||||||||||||||  |||   | |||||| |||||||||||||||||||||||||    
T  19534782 ccctctcatctctcattatatccactcctcttacttgatatgccctctatatatata 19534838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 97 - 152
Target Start/End: Complemental strand, 31415272 - 31415216
Alignment:
Q  97 cctctcatctctcacaatagttagtcctctcacttgatatgccctc-tatatatata 152  Q
    ||||||| |||||||||||   ||| |||||||||||||||||||| ||||||||||    
T  31415272 cctctcacctctcacaataaaaagttctctcacttgatatgccctcatatatatata 31415216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 8e-19; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 52 - 152
Target Start/End: Original strand, 36502345 - 36502444
Alignment:
Q  52 aattgaataccaccgtaaagattaatccaaaggtcagaattcaaccctctcatctctcacaatagttagtcctctcacttgatatgccctctatatatat 151  Q
    |||| |||| ||| |||||||||||||||| ||| || ||| ||||||||||||||||||||||   | ||||||||||||||||||||| |||||||||    
T  36502345 aattaaatatcacagtaaagattaatccaatggttaggattaaaccctctcatctctcacaata-aaactcctctcacttgatatgccctatatatatat 36502443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 63 - 152
Target Start/End: Original strand, 35653804 - 35653892
Alignment:
Q  63 accgtaaagattaatccaaaggtcagaattcaaccctctcatctctcacaatagttagtcctctcacttgatatgccctctatatatata 152  Q
    ||||| |||||||||| || ||| || ||||||||||||||||||||||||||   | |||||||||||||||  |||||||||||||||    
T  35653804 accgttaagattaatcaaatggttaggattcaaccctctcatctctcacaata-aaactcctctcacttgatacaccctctatatatata 35653892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 97 - 152
Target Start/End: Original strand, 35420347 - 35420402
Alignment:
Q  97 cctctcatctctcacaatagttagtcctctcacttgatatgccctctatatatata 152  Q
    |||||||||||||||||||   || |||||||||||||||||||||||||||||||    
T  35420347 cctctcatctctcacaataaaaagccctctcacttgatatgccctctatatatata 35420402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 67 - 152
Target Start/End: Complemental strand, 35653189 - 35653105
Alignment:
Q  67 taaagattaatccaaaggtcagaattcaaccctctcatctctcacaatagttagtcctctcacttgatatgccctctatatatata 152  Q
    ||||||||||| ||| ||| || ||| ||||||||||||||||||||||   | |||||||||||||||  |||||||||||||||    
T  35653189 taaagattaattcaatggttaggatttaaccctctcatctctcacaata-aaactcctctcacttgatacaccctctatatatata 35653105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 97 - 152
Target Start/End: Complemental strand, 35419432 - 35419377
Alignment:
Q  97 cctctcatctctcacaatagttagtcctctcacttgatatgccctctatatatata 152  Q
    |||||||||||||||||||   || |||||||||||||||| ||||||||||||||    
T  35419432 cctctcatctctcacaataaaaagccctctcacttgatatgtcctctatatatata 35419377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 52 - 152
Target Start/End: Original strand, 17604778 - 17604878
Alignment:
Q  52 aattgaataccaccgtaaagattaatccaaaggtcagaattcaaccctctcatctctcacaatagttagtcctctcacttgatatgccctctatatatat 151  Q
    |||| ||| |||| ||| |||| ||||||| |||||  ||| || |||||||||||||||||||   | |||||||||||||||  |||| |||||||||    
T  17604778 aattaaatgccacggtagagataaatccaagggtcatgattgaagcctctcatctctcacaataagaaatcctctcacttgatacaccctatatatatat 17604877  T
Q  152 a 152  Q
    |    
T  17604878 a 17604878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 92 - 152
Target Start/End: Complemental strand, 25080863 - 25080803
Alignment:
Q  92 tcaaccctctcatctctcacaatagttagtcctctcacttgatatgccctctatatatata 152  Q
    |||| ||||||||||||||| |||   | ||||||||||||||||||||||||| ||||||    
T  25080863 tcaatcctctcatctctcactataacaactcctctcacttgatatgccctctatgtatata 25080803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 92 - 152
Target Start/End: Original strand, 25081546 - 25081606
Alignment:
Q  92 tcaaccctctcatctctcacaatagttagtcctctcacttgatatgccctctatatatata 152  Q
    |||| ||||||||||||||| |||   | ||||||||||||||||||||| ||||||||||    
T  25081546 tcaatcctctcatctctcactataacaactcctctcacttgatatgccctatatatatata 25081606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 97 - 152
Target Start/End: Original strand, 55337592 - 55337648
Alignment:
Q  97 cctctcatctctcacaatagttagtcctctcacttgatatgccctc-tatatatata 152  Q
    ||||||||||||||  ||| ||| |||||||||||||||||||||| ||||||||||    
T  55337592 cctctcatctctcattataattactcctctcacttgatatgccctcatatatatata 55337648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 97 - 152
Target Start/End: Original strand, 1489653 - 1489708
Alignment:
Q  97 cctctcatctctcacaatagttagtcctctcacttgatatgccctctatatatata 152  Q
    |||||||||||||||||||   || ||||||| |||||||||||||| ||||||||    
T  1489653 cctctcatctctcacaataaaaagccctctcatttgatatgccctctctatatata 1489708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 121 - 152
Target Start/End: Complemental strand, 31595155 - 31595124
Alignment:
Q  121 tcctctcacttgatatgccctctatatatata 152  Q
    ||||||||||||||||||||||||||||||||    
T  31595155 tcctctcacttgatatgccctctatatatata 31595124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 121 - 152
Target Start/End: Original strand, 31595888 - 31595919
Alignment:
Q  121 tcctctcacttgatatgccctctatatatata 152  Q
    ||||||||||||||||||||||||||||||||    
T  31595888 tcctctcacttgatatgccctctatatatata 31595919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 121 - 152
Target Start/End: Complemental strand, 49308148 - 49308117
Alignment:
Q  121 tcctctcacttgatatgccctctatatatata 152  Q
    ||||||||||||||||||||||||||||||||    
T  49308148 tcctctcacttgatatgccctctatatatata 49308117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 121 - 152
Target Start/End: Original strand, 49308865 - 49308896
Alignment:
Q  121 tcctctcacttgatatgccctctatatatata 152  Q
    ||||||||||||||||||||||||||||||||    
T  49308865 tcctctcacttgatatgccctctatatatata 49308896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 97 - 152
Target Start/End: Complemental strand, 55336881 - 55336826
Alignment:
Q  97 cctctcatctctcacaatagttagtcctctcacttgatatgccctctatatatata 152  Q
    ||||| ||||||||  ||| ||| ||||||||||||||||||||| ||||||||||    
T  55336881 cctcttatctctcattataattactcctctcacttgatatgccctatatatatata 55336826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 115 - 152
Target Start/End: Complemental strand, 34832064 - 34832027
Alignment:
Q  115 agttagtcctctcacttgatatgccctctatatatata 152  Q
    ||||| ||||||||||||||||||||| ||||||||||    
T  34832064 agttactcctctcacttgatatgccctatatatatata 34832027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 119 - 152
Target Start/End: Complemental strand, 48058297 - 48058264
Alignment:
Q  119 agtcctctcacttgatatgccctctatatatata 152  Q
    ||||||||||||||||||||||| ||||||||||    
T  48058297 agtcctctcacttgatatgccctatatatatata 48058264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 120 - 152
Target Start/End: Original strand, 42878411 - 42878443
Alignment:
Q  120 gtcctctcacttgatatgccctctatatatata 152  Q
    |||||||||||||||||| ||||||||||||||    
T  42878411 gtcctctcacttgatatgtcctctatatatata 42878443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 67 - 152
Target Start/End: Complemental strand, 3772669 - 3772585
Alignment:
Q  67 taaagattaatccaaaggtcagaattcaaccctctcatctctcacaatagttagtcctctcacttgatatgccctctatatatata 152  Q
    |||||||||||| || |||||| ||  ||||||||||||||||||||||   |  ||||||| |||||||||||||||||||||||    
T  3772669 taaagattaatctaatggtcaggatctaaccctctcatctctcacaata-aaaaacctctcatttgatatgccctctatatatata 3772585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 59 - 152
Target Start/End: Original strand, 11745777 - 11745870
Alignment:
Q  59 taccaccgtaaagattaatccaaaggtcagaattcaaccctctcatctctcacaatagttagtcctctcacttgatatgccctctatatatata 152  Q
    |||||||||||||||| |||||| | |||  ||| || ||||||| |||||||||||   | || |||||||||||||| ||| ||||||||||    
T  11745777 taccaccgtaaagattcatccaaggatcatgatttaagcctctcacctctcacaataaaaactcatctcacttgatatgacctatatatatata 11745870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 115 - 152
Target Start/End: Complemental strand, 12293490 - 12293453
Alignment:
Q  115 agttagtcctctcacttgatatgccctctatatatata 152  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  12293490 agttactcctctcacttgatatgccctctatatatata 12293453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 52 - 152
Target Start/End: Original strand, 12255850 - 12255950
Alignment:
Q  52 aattgaataccaccgtaaagattaatccaaaggtcagaattcaaccctctcatctctcacaatagttagtcctctcacttgatatgccctctatatatat 151  Q
    |||| ||| |||| ||| |||| ||||||| |||||  ||| || |||||||||||||||||||   | |||||||||||||||  ||||||||||||||    
T  12255850 aattaaatgccacggtagagataaatccaagggtcatgattgaagcctctcatctctcacaataagaaatcctctcacttgatacaccctctatatatat 12255949  T
Q  152 a 152  Q
    |    
T  12255950 a 12255950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 118 - 152
Target Start/End: Original strand, 10470871 - 10470905
Alignment:
Q  118 tagtcctctcacttgatatgccctctatatatata 152  Q
    |||||||||||||||||||||||| ||||||||||    
T  10470871 tagtcctctcacttgatatgccctatatatatata 10470905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 119 - 152
Target Start/End: Original strand, 33574052 - 33574085
Alignment:
Q  119 agtcctctcacttgatatgccctctatatatata 152  Q
    ||||||||||||||||||||||| ||||||||||    
T  33574052 agtcctctcacttgatatgccctatatatatata 33574085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 97 - 152
Target Start/End: Complemental strand, 30321349 - 30321294
Alignment:
Q  97 cctctcatctctcacaatagttagtcctctcacttgatatgccctctatatatata 152  Q
    ||||||||||||||    ||||| ||||||||||||||||||||||||||||||||    
T  30321349 cctctcatctctcatttaagttactcctctcacttgatatgccctctatatatata 30321294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 118 - 152
Target Start/End: Original strand, 20105100 - 20105134
Alignment:
Q  118 tagtcctctcacttgatatgccctctatatatata 152  Q
    |||||||||||||||||||||||||||||||||||    
T  20105100 tagtcctctcacttgatatgccctctatatatata 20105134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 52 - 109
Target Start/End: Original strand, 5664999 - 5665056
Alignment:
Q  52 aattgaataccaccgtaaagattaatccaaaggtcagaattcaaccctctcatctctc 109  Q
    |||| |||| ||| |||||||||||||||| ||| || ||||||||||||||||||||    
T  5664999 aattaaatatcactgtaaagattaatccaatggttaggattcaaccctctcatctctc 5665056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 63 - 115
Target Start/End: Complemental strand, 5664418 - 5664366
Alignment:
Q  63 accgtaaagattaatccaaaggtcagaattcaaccctctcatctctcacaata 115  Q
    ||||| ||||||||||||| ||| || ||||||||||||||||| ||||||||    
T  5664418 accgttaagattaatccaatggttaggattcaaccctctcatctttcacaata 5664366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 97 - 152
Target Start/End: Complemental strand, 39320975 - 39320920
Alignment:
Q  97 cctctcatctctcacaatagttagtcctctcacttgatatgccctctatatatata 152  Q
    ||||||||||||||| |||   |||| |||||||||||||||||| ||||||||||    
T  39320975 cctctcatctctcactataacaagtcatctcacttgatatgccctatatatatata 39320920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 98 - 152
Target Start/End: Original strand, 26185916 - 26185970
Alignment:
Q  98 ctctcatctctcacaatagttagtcctctcacttgatatgccctctatatatata 152  Q
    |||||||||||||||||| ||| | ||||||| |||||||| | |||||||||||    
T  26185916 ctctcatctctcacaataattattgctctcacatgatatgctccctatatatata 26185970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 120 - 152
Target Start/End: Complemental strand, 45107303 - 45107271
Alignment:
Q  120 gtcctctcacttgatatgccctctatatatata 152  Q
    |||||||||||||||||| ||||||||||||||    
T  45107303 gtcctctcacttgatatgtcctctatatatata 45107271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University