View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18747_high_12 (Length: 478)
Name: NF18747_high_12
Description: NF18747
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18747_high_12 |
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Alignment Details
Target: chr1 (Bit Score: 398; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 3 - 463
Target Start/End: Original strand, 3308170 - 3308631
Alignment:
| Q |
3 |
gagttcacggaagaagaaagtgaatgaggaaaagaatttatggagaagaatcaaacttgaaaacttgtaggactacctaaggatcaaagggtagttggat |
102 |
Q |
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| T |
3308170 |
gagttcacggaagaagaaagtgaatgaggaaaagaattcatggagaagaatcaaacttgaaaacttgtgggactacctaaggatcaaagggtagttggat |
3308269 |
T |
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| Q |
103 |
ggaagtggaggtcgatgcctataacagggttcaagaatttcttggacttgatcagttttgctgaagagtaattcgagcactcaagagagcaacaagtggt |
202 |
Q |
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| T |
3308270 |
ggaagtggaggtcgatgcctataacagggttcaagaatttctcggacttgatcagttttgctgaagagtaatttcggcactcaagagagcaacaagtggt |
3308369 |
T |
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| Q |
203 |
tgatgggtaaatattgagcattaccacttatttgaagtcaaagtggagaattatagcgagtatgtcttcaaatatgtgtttttagcttctagaggtgacg |
302 |
Q |
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| T |
3308370 |
tgatgggtaaatattgagcattaccacttatttgaagtcaaagtggagaattatggcgagtatgtcttcaaatatgtgtttttagcttctagaggtgatg |
3308469 |
T |
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| Q |
303 |
atttaaatcatggtaattggggtgaaaggttgattcgaaccttggtggtgaaaatgggttcaagtcac-tgtttttcttggttgattcgaatcaggggta |
401 |
Q |
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| T |
3308470 |
atttaaatcaaggtaattggggtgaaaggttgattcgagccttggtggtgaaaatgggttcaagtcacttttttttcttggttgattcgaatcaggggta |
3308569 |
T |
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| Q |
402 |
gcatgattcaaattggatatttgctctctcccgcaaacaaatcattttcaggctgcattgtg |
463 |
Q |
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| T |
3308570 |
gcatgattcaaatttgatatttgctctctcccgcaaataaatcattttcaggctgaattgtg |
3308631 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 130 - 176
Target Start/End: Original strand, 4386380 - 4386426
Alignment:
| Q |
130 |
ggttcaagaatttcttggacttgatcagttttgctgaagagtaattc |
176 |
Q |
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| T |
4386380 |
ggttcaagaattgcttggacttggtcaattttgttgaagagtaattc |
4386426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 43 - 111
Target Start/End: Complemental strand, 16257364 - 16257296
Alignment:
| Q |
43 |
tggagaagaatcaaacttgaaaacttgtaggactacctaaggatcaaagggtagttggatggaagtgga |
111 |
Q |
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| T |
16257364 |
tggaaaagaaccaaacttggaaacttgtaaagctacctaaacaccaaagggtagttggatgcaagtgga |
16257296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 43 - 111
Target Start/End: Original strand, 16626784 - 16626852
Alignment:
| Q |
43 |
tggagaagaatcaaacttgaaaacttgtaggactacctaaggatcaaagggtagttggatggaagtgga |
111 |
Q |
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| T |
16626784 |
tggaaaagaaccaaacttgaaaacttgtgaagctacctaaacaccaaagggtagttggatgcaagtgga |
16626852 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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