View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18747_high_19 (Length: 360)
Name: NF18747_high_19
Description: NF18747
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18747_high_19 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 1 - 346
Target Start/End: Original strand, 23031240 - 23031585
Alignment:
| Q |
1 |
tagcatacatttgagtacgctcattgtttaatatctcagaatcagacataacaactgaaactgaaaaagaccttgacctacttcccattgaagattttcg |
100 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23031240 |
tagcatacattttagtacgctcattgtttaatatctcagaatcagacataacaactgaaactgaaaaagaccttgacctacttcccattgaagattttcg |
23031339 |
T |
|
| Q |
101 |
tatacttgaagcttcaattctatgcctaataacccaataactcatagtacccaatgtagtagccattatggtagtcccaataatagttaccccaattgca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23031340 |
tatacttgaagcttcaattctatgcctaataacccaataactcatagtacccaatgtagtagccattatggtagtcccaataatagttaccccaattgca |
23031439 |
T |
|
| Q |
201 |
agccatctttgttttttacccacaactaaaaatgacaaagccaaaaatgacacagatataagcacacaagctacccacattagtttgttaataatagcca |
300 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23031440 |
agccatctttgttttttccccacaactaaaaatgacaaagccaaaaatgacacagatataagcacacaagctacccacattagtttgttaataatagcca |
23031539 |
T |
|
| Q |
301 |
tcatttgtttctttgctttgctttcaacaacaactattgatgtttg |
346 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23031540 |
tcatttgtttctttgctttgctttcaacaacaactattgatgtttg |
23031585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 114 - 334
Target Start/End: Original strand, 41064919 - 41065139
Alignment:
| Q |
114 |
tcaattctatgcctaataacccaataactcatagtacccaatgtagtagccattatggtagtcccaataatagttaccccaattgcaagccatctttgtt |
213 |
Q |
| |
|
||||||| |||| |||| |||||||||| |||||| ||||| || ||||||||||| || | || ||||| || || |||||| | |||| ||| || |
|
|
| T |
41064919 |
tcaattcgatgcttaatgacccaataacacatagttcccaaagttgtagccattatagttgctcctataatggtaacaaaaattgccaaccatttttctt |
41065018 |
T |
|
| Q |
214 |
ttttacccacaactaaaaatgacaaagccaaaaatgacacagatataagcacacaagctacccacattagtttgttaataatagccatcatttgtttctt |
313 |
Q |
| |
|
|| || ||||| | ||||||||| || ||||||| |||||| |||||||||||||| | ||||||||| || ||||| |||||| |||||||||||| |
|
|
| T |
41065019 |
cctttccaacaacaacaaatgacaatgctaaaaatgccacagaaataagcacacaagccaaccacattagcttattaattatagccgccatttgtttctt |
41065118 |
T |
|
| Q |
314 |
tgctttgctttcaacaacaac |
334 |
Q |
| |
|
|||||||||||| | |||||| |
|
|
| T |
41065119 |
tgctttgctttcgataacaac |
41065139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 246 - 327
Target Start/End: Original strand, 40420534 - 40420615
Alignment:
| Q |
246 |
aatgacacagatataagcacacaagctacccacattagtttgttaataatagccatcatttgtttctttgctttgctttcaa |
327 |
Q |
| |
|
|||| |||||| || | |||||| |||| |||||||| ||||| |||| |||| |||||||||||||||||| ||||||| |
|
|
| T |
40420534 |
aatgccacagaaattaacacacatgctatccacattaacttgtttataacagccgtcatttgtttctttgcttccctttcaa |
40420615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University