View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18747_high_20 (Length: 346)
Name: NF18747_high_20
Description: NF18747
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18747_high_20 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 6 - 332
Target Start/End: Original strand, 40556586 - 40556912
Alignment:
| Q |
6 |
agaagaatcatgaggacgttgattgtggatgcaatgaaggttttgacaaaataataaccaagnnnnnnngaaggaaccaatcagcgacaagagattttag |
105 |
Q |
| |
|
|||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
40556586 |
agaagaatcatgaggatgttgtttgtggatgcaatgaaggttttgacaaaataataaccaagaaaaaaagaaggaaccaatcagcgacaagagattttag |
40556685 |
T |
|
| Q |
106 |
cagtcttaaatatggtatgcttgaatcaaagaatcgcggggttgctgattgtagacgcgatgagggtgttgggaaaaaacttatcaagacaagaagaagt |
205 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40556686 |
cattcttaaatatggtatgcttgaatcaaagaatcgcggggttactgattgtagacgcgatgagggtgttgggaaaaaacttatcaagacaagaagaagt |
40556785 |
T |
|
| Q |
206 |
gatggaccacgggtgagaattgcttttggcaatcctgatacaaagaataatgagggagctcatgagggatcttcatccaatgaaggttccaaaaaggaga |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40556786 |
gatggaccacgggtgagaattgcttttggcaatcctgatacaaagaataatgagggagctcatgagggatcttcatccaatgaaggttccaaaaaggaga |
40556885 |
T |
|
| Q |
306 |
tcaagaaaagaaaagacaagaatgaac |
332 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
40556886 |
tcaagaaaagaaaagacaagaatgaac |
40556912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University