View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18747_high_23 (Length: 326)
Name: NF18747_high_23
Description: NF18747
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18747_high_23 |
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Alignment Details
Target: chr7 (Bit Score: 258; Significance: 1e-143; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 1 - 310
Target Start/End: Complemental strand, 37765526 - 37765226
Alignment:
| Q |
1 |
acatgttagggaggatggactaagaaaagaattttctaagaaaggagaaataactgatgtcaaggttatccgtaccaagtattatttctttccttaaatc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37765526 |
acatgttagggaggatggactaagaaaagaattttctaagaaaggagaaataactgatgtcaaggttatccgtaccaagtattatttctttccttaaatc |
37765427 |
T |
|
| Q |
101 |
ataaaatcattattccaatcctcatggaaacttgtttagaattttcattgctctgtgttgtttactgttaattcagaaatggcaaaactcgactgtttgc |
200 |
Q |
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| T |
37765426 |
ataaaatcattattccaatcctcatggaaacttgtttagaattttaattgctctgtgttgtttactgttaattcagaaatggcaaaactcgactgtttgc |
37765327 |
T |
|
| Q |
201 |
ttttatcggatttcgtacagccaaggtagctcaggaagcgattcgatattttaataaatctttccttgactcgcatagaattacttgtgaggtctgttgt |
300 |
Q |
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|||||| || ||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
37765326 |
ttttattgggtttcgtacagcca---------aggaagcgatttgatattttaataaatctttccttgactcgcatagaattacttgtgaggtcggttgt |
37765236 |
T |
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| Q |
301 |
ttatgccatt |
310 |
Q |
| |
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|||||||||| |
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| T |
37765235 |
ttatgccatt |
37765226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 30 - 310
Target Start/End: Original strand, 37560256 - 37560537
Alignment:
| Q |
30 |
aattttctaagaaaggagaaataactgatgtcaaggttatccgtaccaagtattatttctttccttaaatcataaaatcattattccaatcctcatggaa |
129 |
Q |
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|||||||| |||||||||||||||||||||||||| |||| ||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
37560256 |
aattttctcagaaaggagaaataactgatgtcaagcttatgcgtaccaagtattgtttctttccttaaatcataaaatccttattccaatcctcatggaa |
37560355 |
T |
|
| Q |
130 |
acttgtttagaattttcattgctctgtgttgtttactg-ttaattcagaaatggcaaaactcgactgtttgcttttatcggatttcgtacagccaaggta |
228 |
Q |
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| T |
37560356 |
acttgtttagaattttaactgctctatgttgtttactgtttaactcagatatggcaaaagttgactattttcttttatcggatttcgtacagccgaggaa |
37560455 |
T |
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| Q |
229 |
gctcaggaagcgattcgatattttaataaatctttccttgactcgcatagaattacttgtgaggtctgttgtttatgccatt |
310 |
Q |
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||||||||||||||||||||||| |||| | || |||| || ||| ||||||||||||||||||| ||||||||| ||||| |
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| T |
37560456 |
gctcaggaagcgattcgatatttgaatagttgttacctttacacgcttagaattacttgtgaggtcggttgtttataccatt |
37560537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 11 - 310
Target Start/End: Complemental strand, 37744337 - 37744040
Alignment:
| Q |
11 |
gaggatggactaagaaaagaattttctaagaaaggagaaataactgatgtcaaggttatccgtaccaagtattatttctttccttaaatcataaaatcat |
110 |
Q |
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|||||| |||||| | |||||||||||| ||||||||||||||||||||||||| |||| ||||| ||||||| |||||||||| || |||||||||| | |
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| T |
37744337 |
gaggatcgactaaaacaagaattttctaggaaaggagaaataactgatgtcaagcttatgcgtacaaagtattgtttctttcctaaagtcataaaatctt |
37744238 |
T |
|
| Q |
111 |
tattccaatcctcatggaaacttgtttagaattttcattgctctgtgttgtttact-gttaattcagaaatggcaaaactcgactgtttgcttttatcgg |
209 |
Q |
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|||||||||||||||||| |||||||| ||||||| | || ||||||||||||| ||||| ||||||| || |||| ||| | |||||||||||||| |
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| T |
37744237 |
tattccaatcctcatggacacttgttttgaattttaa---ctttgtgttgtttactggttaactcagaaacgggaaaagtcgccaatttgcttttatcgg |
37744141 |
T |
|
| Q |
210 |
atttcgtacagccaaggtagctcaggaagcgattcgatattttaataaatctttccttgactcgcatagaattacttgtgaggtctgttgtttatgccat |
309 |
Q |
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||||||||||| | ||| |||||||| ||||||| ||||||||||||||||| ||||||| |||| |||||||||||||||| |||||||||||||| |
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| T |
37744140 |
atttcgtacagaccaggaagctcaggcagcgattaaatattttaataaatcttaccttgacacgcaagcaattacttgtgaggtcggttgtttatgccat |
37744041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 30 - 302
Target Start/End: Original strand, 38600711 - 38600989
Alignment:
| Q |
30 |
aattttctaagaaaggagaaataactgatgtcaaggttatccgtaccaagtattatttctttccttaaatcataaaatcattattccaatcctcatggaa |
129 |
Q |
| |
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|||||||||||| |||||||||||||||||||||| |||| ||||||| ||||| |||||||||||||||| ||||||| ||||||||||||||||||| |
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| T |
38600711 |
aattttctaagataggagaaataactgatgtcaagcttatgcgtaccatgtattgtttctttccttaaatc-taaaatccttattccaatcctcatggac |
38600809 |
T |
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| Q |
130 |
acttgtttagaattt----tcattgctctgtgttgtttactgtt---aattcagaaatggcaaaactcgactgtttgcttttatcggatttcgtacagcc |
222 |
Q |
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|||| ||||||||| |||| | | ||||||||||||| | ||||||||| || |||| ||| | ||||||||||| ||||||||||| | | |
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| T |
38600810 |
acttacttagaattttaactcatcggtgggtgttgtttactggttaaaattcagaaccggaaaaagtcggcaatttgcttttattggatttcgtaccgac |
38600909 |
T |
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| Q |
223 |
aaggtagctcaggaagcgattcgatattttaataaatctttccttgactcgcatagaattacttgtgaggtctgttgttt |
302 |
Q |
| |
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|| |||||||||||| |||||| || ||||||| |||| | ||||| | || | |||||||||||||||| ||||||| |
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| T |
38600910 |
cgggaagctcaggaagcaattcgacatcttaataattcttactttgacacacaaaaaattacttgtgaggtcagttgttt |
38600989 |
T |
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