View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18747_high_25 (Length: 317)
Name: NF18747_high_25
Description: NF18747
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18747_high_25 |
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Alignment Details
Target: chr3 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 10 - 292
Target Start/End: Complemental strand, 38921127 - 38920824
Alignment:
| Q |
10 |
gacatcatcaacaaaaggagtttccatataaaaacatgttcattaaagcctcattact------------------aacggatatctaatattggtttac |
91 |
Q |
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| T |
38921127 |
gacatcttcaacaaaaggagtttccatataaaaacatgttcattaaagcctcattactcaccagtgcttagcgataaacggatatctaatattggtttac |
38921028 |
T |
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| Q |
92 |
caatagtgcacttaaaaatccacaattttttacatactgaaacatgcattaaaatcttagtttctatgggtaccaccagcttagcttaatgtcattgtct |
191 |
Q |
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| T |
38921027 |
caatagtgcacttaaaaatccacaattttttacatactgaaacatgcattaaaatcttagtttctatgggtaccaccagcttagcttaatgtcattgtct |
38920928 |
T |
|
| Q |
192 |
gtctatctctataatctacttaaacaagcatccagatggctgcatagcaaacaaatgtttatggttgggaaatcaacaataa---ataacttattcatac |
288 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
38920927 |
gtctatctctataatctacttaaacaagcatccagatggctgcatagcaaacaaatgtttatggttgggaaatcaacaataaataataacttattcatac |
38920828 |
T |
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| Q |
289 |
ctca |
292 |
Q |
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|||| |
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| T |
38920827 |
ctca |
38920824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 104; Significance: 8e-52; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 125 - 292
Target Start/End: Complemental strand, 10544869 - 10544702
Alignment:
| Q |
125 |
atactgaaacatgcattaaaatcttagtttctatgggtaccaccagcttagcttaatgtcattgtctgtctatctctataatctacttaaacaagcatcc |
224 |
Q |
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| T |
10544869 |
atactcaaacaagcattaaaattttagttcctatgggtaccaccagcttagcttaatgccactgcctgtctatctctataacctactaaaacatgcatcc |
10544770 |
T |
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| Q |
225 |
agatggctgcatagcaaacaaatgtttatggttgggaaatcaacaataaataacttattcatacctca |
292 |
Q |
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| T |
10544769 |
agatgacttcataacaaacaaatgtttatggtcggaaaattaacaataaataacttattcatacctca |
10544702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 10 - 63
Target Start/End: Complemental strand, 10545188 - 10545135
Alignment:
| Q |
10 |
gacatcatcaacaaaaggagtttccatataaaaacatgttcattaaagcctcat |
63 |
Q |
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|||||| ||||||||||||||||||||||||||| ||||| | ||||||||||| |
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| T |
10545188 |
gacatcttcaacaaaaggagtttccatataaaaatatgtttagtaaagcctcat |
10545135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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