View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18747_high_30 (Length: 295)
Name: NF18747_high_30
Description: NF18747
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18747_high_30 |
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Alignment Details
Target: chr3 (Bit Score: 232; Significance: 1e-128; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 18 - 280
Target Start/End: Original strand, 31728837 - 31729106
Alignment:
| Q |
18 |
aagcaccagtacaagctgaagtctgcgaaagttatcattacaagatacctgataagttgaccaaataaaaaatgtcaacagccataaatttcaactatgg |
117 |
Q |
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| T |
31728837 |
aagcaccagtacaagctgaagtctgcaaaagttatcattacaagatacctgataagttgaccaaataaaaaatgtcaacagccataaatttcaactatgg |
31728936 |
T |
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| Q |
118 |
aatctgaagggattaaacaaaagaaatttacttacacaatatcatgtatttgt-------tccgaaggtccaccaaaagaaatttcaaccaagtaataga |
210 |
Q |
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| T |
31728937 |
aatctgaagggattaaacaaaagaaatttacttacacaatatcatgtatttgttccgaactccgaaggtccaccaaaagaaatttcaaccatgtaataga |
31729036 |
T |
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| Q |
211 |
ccaaataaccaaggtccaccaaatgcataaattaactcttcaagagctgtatagtctggcatgtgatatc |
280 |
Q |
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| T |
31729037 |
ccaaataaccaaggtccaccacatgcataaattaactcttcaagagctgtatagtctggcatgtgatatc |
31729106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 69 - 179
Target Start/End: Original strand, 51636047 - 51636157
Alignment:
| Q |
69 |
ataagttgaccaaataaaaaatgtcaacagccataaatttcaactatggaatctgaagggattaaacaaaagaaatttacttacacaatatcatgtattt |
168 |
Q |
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| T |
51636047 |
ataagttaaccaaatacaaaatgtcaacagccagaaatttcaactaaggaatctgcaaggatcagacaaaagaaatttacttacacaatatcatgtattt |
51636146 |
T |
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| Q |
169 |
gttccgaaggt |
179 |
Q |
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| T |
51636147 |
gttcagaaggt |
51636157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 202 - 280
Target Start/End: Original strand, 51636545 - 51636626
Alignment:
| Q |
202 |
agtaatagaccaaataaccaaggtccaccaaatgcataaattaactcttcaagagctgtat---agtctggcatgtgatatc |
280 |
Q |
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| T |
51636545 |
agtaaaagaccaaacaaccaaggtccaccaaatgtataaattaactcttcaagagctgtataacagtctggcatgtgatatc |
51636626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 18 - 70
Target Start/End: Original strand, 51633410 - 51633462
Alignment:
| Q |
18 |
aagcaccagtacaagctgaagtctgcgaaagttatcattacaagatacctgat |
70 |
Q |
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| T |
51633410 |
aagcaccagtacaagctgaagtctgcaaaaattatcattacaagatacctgat |
51633462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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